Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1099

Experiment: KB with Berberine 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1098 and Psyr_1099 are separated by 9 nucleotidesPsyr_1099 and Psyr_1100 overlap by 16 nucleotides Psyr_1098: Psyr_1098 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 1,242,184 to 1,244,301 _1098 Psyr_1099: Psyr_1099 - Response regulator receiver, at 1,244,311 to 1,244,700 _1099 Psyr_1100: Psyr_1100 - PAS/PAC sensor signal transduction histidine kinase, at 1,244,685 to 1,246,415 _1100 Position (kb) 1244 1245Strain fitness (log2 ratio) -1 0 1 2at 1243.667 kb on + strand, within Psyr_1098at 1243.667 kb on + strand, within Psyr_1098at 1243.667 kb on + strand, within Psyr_1098at 1243.668 kb on - strand, within Psyr_1098at 1243.668 kb on - strand, within Psyr_1098at 1243.942 kb on - strand, within Psyr_1098at 1243.989 kb on - strand, within Psyr_1098at 1243.989 kb on - strand, within Psyr_1098at 1243.989 kb on - strand, within Psyr_1098at 1244.062 kb on + strand, within Psyr_1098at 1244.062 kb on + strand, within Psyr_1098at 1244.062 kb on + strand, within Psyr_1098at 1244.063 kb on - strand, within Psyr_1098at 1244.063 kb on - strand, within Psyr_1098at 1244.063 kb on - strand, within Psyr_1098at 1244.108 kb on + strandat 1244.109 kb on - strandat 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.644 kb on + strand, within Psyr_1099at 1244.644 kb on + strand, within Psyr_1099at 1244.645 kb on - strand, within Psyr_1099at 1244.645 kb on - strand, within Psyr_1099at 1244.645 kb on - strand, within Psyr_1099at 1244.645 kb on - strand, within Psyr_1099at 1245.008 kb on + strand, within Psyr_1100at 1245.101 kb on - strand, within Psyr_1100at 1245.338 kb on + strand, within Psyr_1100at 1245.345 kb on + strand, within Psyr_1100at 1245.346 kb on - strand, within Psyr_1100at 1245.346 kb on - strand, within Psyr_1100at 1245.346 kb on - strand, within Psyr_1100at 1245.346 kb on - strand, within Psyr_1100at 1245.349 kb on + strand, within Psyr_1100at 1245.349 kb on + strand, within Psyr_1100at 1245.349 kb on + strand, within Psyr_1100at 1245.349 kb on + strand, within Psyr_1100at 1245.349 kb on + strand, within Psyr_1100at 1245.349 kb on + strand, within Psyr_1100at 1245.350 kb on - strand, within Psyr_1100at 1245.350 kb on - strand, within Psyr_1100at 1245.497 kb on + strand, within Psyr_1100at 1245.608 kb on - strand, within Psyr_1100at 1245.608 kb on - strand, within Psyr_1100at 1245.608 kb on - strand, within Psyr_1100at 1245.608 kb on - strand, within Psyr_1100

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 15.6 ug/ml
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1,243,667 + Psyr_1098 0.70 -0.3
1,243,667 + Psyr_1098 0.70 +1.8
1,243,667 + Psyr_1098 0.70 +0.6
1,243,668 - Psyr_1098 0.70 -0.8
1,243,668 - Psyr_1098 0.70 +0.5
1,243,942 - Psyr_1098 0.83 +0.4
1,243,989 - Psyr_1098 0.85 -0.1
1,243,989 - Psyr_1098 0.85 +0.2
1,243,989 - Psyr_1098 0.85 +0.7
1,244,062 + Psyr_1098 0.89 +0.8
1,244,062 + Psyr_1098 0.89 +0.5
1,244,062 + Psyr_1098 0.89 +0.3
1,244,063 - Psyr_1098 0.89 +1.8
1,244,063 - Psyr_1098 0.89 -0.1
1,244,063 - Psyr_1098 0.89 -0.8
1,244,108 + -1.6
1,244,109 - +0.4
1,244,399 + Psyr_1099 0.23 -0.6
1,244,399 + Psyr_1099 0.23 +0.0
1,244,399 + Psyr_1099 0.23 -0.8
1,244,399 + Psyr_1099 0.23 +0.7
1,244,399 + Psyr_1099 0.23 -0.0
1,244,399 + Psyr_1099 0.23 -0.7
1,244,399 + Psyr_1099 0.23 +0.1
1,244,400 - Psyr_1099 0.23 +1.5
1,244,400 - Psyr_1099 0.23 -0.0
1,244,400 - Psyr_1099 0.23 +0.4
1,244,400 - Psyr_1099 0.23 +0.4
1,244,400 - Psyr_1099 0.23 -0.2
1,244,400 - Psyr_1099 0.23 +0.7
1,244,644 + Psyr_1099 0.85 -0.0
1,244,644 + Psyr_1099 0.85 -0.8
1,244,645 - Psyr_1099 0.86 +0.3
1,244,645 - Psyr_1099 0.86 +0.7
1,244,645 - Psyr_1099 0.86 +0.9
1,244,645 - Psyr_1099 0.86 +1.5
1,245,008 + Psyr_1100 0.19 -0.7
1,245,101 - Psyr_1100 0.24 +0.1
1,245,338 + Psyr_1100 0.38 -0.6
1,245,345 + Psyr_1100 0.38 -0.2
1,245,346 - Psyr_1100 0.38 -0.1
1,245,346 - Psyr_1100 0.38 -0.0
1,245,346 - Psyr_1100 0.38 +0.4
1,245,346 - Psyr_1100 0.38 -0.4
1,245,349 + Psyr_1100 0.38 -0.2
1,245,349 + Psyr_1100 0.38 +0.4
1,245,349 + Psyr_1100 0.38 -0.4
1,245,349 + Psyr_1100 0.38 -0.3
1,245,349 + Psyr_1100 0.38 -0.5
1,245,349 + Psyr_1100 0.38 -0.1
1,245,350 - Psyr_1100 0.38 -0.7
1,245,350 - Psyr_1100 0.38 +0.9
1,245,497 + Psyr_1100 0.47 +0.3
1,245,608 - Psyr_1100 0.53 -0.1
1,245,608 - Psyr_1100 0.53 +0.8
1,245,608 - Psyr_1100 0.53 -1.1
1,245,608 - Psyr_1100 0.53 -0.7

Or see this region's nucleotide sequence