Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1087

Experiment: KB with Berberine 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1086 and Psyr_1087 are separated by 123 nucleotidesPsyr_1087 and Psyr_1088 overlap by 4 nucleotidesPsyr_1088 and Psyr_1089 are separated by 43 nucleotides Psyr_1086: Psyr_1086 - valyl-tRNA synthetase, at 1,227,714 to 1,230,560 _1086 Psyr_1087: Psyr_1087 - CDS, at 1,230,684 to 1,230,956 _1087 Psyr_1088: Psyr_1088 - CDS, at 1,230,953 to 1,231,684 _1088 Psyr_1089: Psyr_1089 - conserved hypothetical protein, at 1,231,728 to 1,232,162 _1089 Position (kb) 1230 1231Strain fitness (log2 ratio) -1 0 1 2at 1230.603 kb on - strandat 1230.605 kb on - strandat 1230.605 kb on - strandat 1230.664 kb on + strandat 1230.664 kb on + strandat 1230.665 kb on - strandat 1230.719 kb on + strand, within Psyr_1087at 1230.719 kb on + strand, within Psyr_1087at 1230.720 kb on - strand, within Psyr_1087at 1230.720 kb on - strand, within Psyr_1087at 1230.786 kb on + strand, within Psyr_1087at 1230.877 kb on + strand, within Psyr_1087at 1230.878 kb on - strand, within Psyr_1087at 1231.064 kb on + strand, within Psyr_1088at 1231.065 kb on - strand, within Psyr_1088at 1231.070 kb on + strand, within Psyr_1088at 1231.070 kb on + strand, within Psyr_1088at 1231.070 kb on + strand, within Psyr_1088at 1231.071 kb on - strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.129 kb on - strand, within Psyr_1088at 1231.129 kb on - strand, within Psyr_1088at 1231.129 kb on - strand, within Psyr_1088at 1231.129 kb on - strand, within Psyr_1088at 1231.170 kb on + strand, within Psyr_1088at 1231.171 kb on - strand, within Psyr_1088at 1231.171 kb on - strand, within Psyr_1088at 1231.219 kb on + strand, within Psyr_1088at 1231.219 kb on + strand, within Psyr_1088at 1231.219 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.263 kb on + strand, within Psyr_1088at 1231.264 kb on - strand, within Psyr_1088at 1231.267 kb on + strand, within Psyr_1088at 1231.267 kb on + strand, within Psyr_1088at 1231.278 kb on + strand, within Psyr_1088at 1231.299 kb on + strand, within Psyr_1088at 1231.300 kb on - strand, within Psyr_1088at 1231.300 kb on - strand, within Psyr_1088at 1231.321 kb on + strand, within Psyr_1088at 1231.322 kb on - strand, within Psyr_1088at 1231.322 kb on - strand, within Psyr_1088at 1231.324 kb on - strand, within Psyr_1088at 1231.353 kb on + strand, within Psyr_1088at 1231.353 kb on + strand, within Psyr_1088at 1231.353 kb on + strand, within Psyr_1088at 1231.354 kb on - strand, within Psyr_1088at 1231.354 kb on - strand, within Psyr_1088at 1231.354 kb on - strand, within Psyr_1088at 1231.354 kb on - strand, within Psyr_1088at 1231.354 kb on - strand, within Psyr_1088at 1231.354 kb on - strand, within Psyr_1088at 1231.486 kb on + strand, within Psyr_1088at 1231.522 kb on + strand, within Psyr_1088at 1231.522 kb on + strand, within Psyr_1088at 1231.523 kb on - strand, within Psyr_1088at 1231.560 kb on + strand, within Psyr_1088at 1231.565 kb on - strand, within Psyr_1088at 1231.567 kb on + strand, within Psyr_1088at 1231.568 kb on - strand, within Psyr_1088at 1231.570 kb on + strand, within Psyr_1088at 1231.570 kb on + strand, within Psyr_1088at 1231.570 kb on + strand, within Psyr_1088at 1231.571 kb on - strand, within Psyr_1088at 1231.669 kb on - strandat 1231.694 kb on + strandat 1231.694 kb on + strandat 1231.694 kb on + strandat 1231.694 kb on + strandat 1231.694 kb on + strandat 1231.695 kb on - strandat 1231.695 kb on - strandat 1231.695 kb on - strandat 1231.695 kb on - strandat 1231.951 kb on - strand, within Psyr_1089

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 15.6 ug/ml
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1,230,603 - -0.4
1,230,605 - +1.0
1,230,605 - -0.9
1,230,664 + -0.4
1,230,664 + -0.0
1,230,665 - +0.9
1,230,719 + Psyr_1087 0.13 +1.3
1,230,719 + Psyr_1087 0.13 -0.7
1,230,720 - Psyr_1087 0.13 -1.1
1,230,720 - Psyr_1087 0.13 -0.8
1,230,786 + Psyr_1087 0.37 +0.5
1,230,877 + Psyr_1087 0.71 +0.5
1,230,878 - Psyr_1087 0.71 -0.9
1,231,064 + Psyr_1088 0.15 -0.8
1,231,065 - Psyr_1088 0.15 +0.1
1,231,070 + Psyr_1088 0.16 -0.6
1,231,070 + Psyr_1088 0.16 -1.6
1,231,070 + Psyr_1088 0.16 -0.0
1,231,071 - Psyr_1088 0.16 -1.2
1,231,128 + Psyr_1088 0.24 +0.5
1,231,128 + Psyr_1088 0.24 +0.1
1,231,128 + Psyr_1088 0.24 -0.0
1,231,128 + Psyr_1088 0.24 +0.2
1,231,129 - Psyr_1088 0.24 +0.3
1,231,129 - Psyr_1088 0.24 -1.3
1,231,129 - Psyr_1088 0.24 -0.0
1,231,129 - Psyr_1088 0.24 -0.1
1,231,170 + Psyr_1088 0.30 +1.3
1,231,171 - Psyr_1088 0.30 -0.9
1,231,171 - Psyr_1088 0.30 +0.1
1,231,219 + Psyr_1088 0.36 -1.0
1,231,219 + Psyr_1088 0.36 +1.4
1,231,219 + Psyr_1088 0.36 +0.3
1,231,222 + Psyr_1088 0.37 -0.8
1,231,222 + Psyr_1088 0.37 +0.3
1,231,222 + Psyr_1088 0.37 +1.0
1,231,222 + Psyr_1088 0.37 +2.0
1,231,222 + Psyr_1088 0.37 +1.4
1,231,222 + Psyr_1088 0.37 -0.4
1,231,222 + Psyr_1088 0.37 -0.3
1,231,222 + Psyr_1088 0.37 -0.6
1,231,223 - Psyr_1088 0.37 -0.7
1,231,223 - Psyr_1088 0.37 -0.3
1,231,223 - Psyr_1088 0.37 -1.1
1,231,223 - Psyr_1088 0.37 -1.1
1,231,263 + Psyr_1088 0.42 -1.0
1,231,264 - Psyr_1088 0.42 -0.0
1,231,267 + Psyr_1088 0.43 -0.0
1,231,267 + Psyr_1088 0.43 +0.1
1,231,278 + Psyr_1088 0.44 +0.9
1,231,299 + Psyr_1088 0.47 +0.4
1,231,300 - Psyr_1088 0.47 -0.7
1,231,300 - Psyr_1088 0.47 -0.7
1,231,321 + Psyr_1088 0.50 -0.2
1,231,322 - Psyr_1088 0.50 +0.2
1,231,322 - Psyr_1088 0.50 +1.3
1,231,324 - Psyr_1088 0.51 -0.3
1,231,353 + Psyr_1088 0.55 +1.2
1,231,353 + Psyr_1088 0.55 -0.6
1,231,353 + Psyr_1088 0.55 +1.1
1,231,354 - Psyr_1088 0.55 -0.5
1,231,354 - Psyr_1088 0.55 +1.0
1,231,354 - Psyr_1088 0.55 -1.3
1,231,354 - Psyr_1088 0.55 +0.6
1,231,354 - Psyr_1088 0.55 -0.0
1,231,354 - Psyr_1088 0.55 +0.1
1,231,486 + Psyr_1088 0.73 +0.3
1,231,522 + Psyr_1088 0.78 +0.7
1,231,522 + Psyr_1088 0.78 +0.1
1,231,523 - Psyr_1088 0.78 -0.1
1,231,560 + Psyr_1088 0.83 -0.0
1,231,565 - Psyr_1088 0.84 +1.0
1,231,567 + Psyr_1088 0.84 +0.1
1,231,568 - Psyr_1088 0.84 +0.4
1,231,570 + Psyr_1088 0.84 +0.0
1,231,570 + Psyr_1088 0.84 +0.7
1,231,570 + Psyr_1088 0.84 -0.7
1,231,571 - Psyr_1088 0.84 -1.0
1,231,669 - -1.2
1,231,694 + -0.3
1,231,694 + +0.5
1,231,694 + +0.8
1,231,694 + -0.4
1,231,694 + -0.3
1,231,695 - +0.4
1,231,695 - -0.6
1,231,695 - +0.5
1,231,695 - -1.0
1,231,951 - Psyr_1089 0.51 -0.2

Or see this region's nucleotide sequence