Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0869

Experiment: KB with Berberine 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0868 and Psyr_0869 are separated by 8 nucleotidesPsyr_0869 and Psyr_0870 are separated by 81 nucleotides Psyr_0868: Psyr_0868 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 989,205 to 990,845 _0868 Psyr_0869: Psyr_0869 - GCN5-related N-acetyltransferase, at 990,854 to 991,291 _0869 Psyr_0870: Psyr_0870 - GGDEF domain protein, at 991,373 to 992,566 _0870 Position (kb) 990 991 992Strain fitness (log2 ratio) -2 -1 0 1 2at 990.017 kb on - strand, within Psyr_0868at 990.827 kb on - strandat 990.848 kb on + strandat 990.848 kb on + strandat 990.848 kb on + strandat 990.848 kb on + strandat 990.848 kb on + strandat 990.849 kb on - strandat 990.849 kb on - strandat 990.849 kb on - strandat 990.940 kb on - strand, within Psyr_0869at 991.111 kb on - strand, within Psyr_0869at 991.111 kb on - strand, within Psyr_0869at 991.393 kb on + strandat 991.393 kb on + strandat 991.393 kb on + strandat 991.393 kb on + strandat 991.394 kb on - strandat 991.394 kb on - strandat 991.394 kb on - strandat 991.394 kb on - strandat 991.417 kb on - strandat 991.699 kb on + strand, within Psyr_0870at 991.700 kb on - strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.731 kb on + strand, within Psyr_0870at 991.732 kb on - strand, within Psyr_0870at 991.917 kb on + strand, within Psyr_0870at 991.917 kb on + strand, within Psyr_0870at 991.918 kb on - strand, within Psyr_0870at 991.918 kb on - strand, within Psyr_0870at 991.918 kb on - strand, within Psyr_0870at 991.918 kb on - strand, within Psyr_0870at 991.918 kb on - strand, within Psyr_0870at 991.947 kb on + strand, within Psyr_0870at 991.948 kb on - strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.034 kb on + strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.035 kb on - strand, within Psyr_0870at 992.066 kb on + strand, within Psyr_0870at 992.067 kb on - strand, within Psyr_0870at 992.067 kb on - strand, within Psyr_0870at 992.067 kb on - strand, within Psyr_0870at 992.067 kb on - strand, within Psyr_0870at 992.118 kb on + strand, within Psyr_0870at 992.119 kb on - strand, within Psyr_0870at 992.148 kb on + strand, within Psyr_0870at 992.149 kb on - strand, within Psyr_0870at 992.210 kb on + strand, within Psyr_0870at 992.251 kb on + strand, within Psyr_0870at 992.284 kb on + strand, within Psyr_0870

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 15.6 ug/ml
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990,017 - Psyr_0868 0.49 +0.7
990,827 - +0.1
990,848 + -1.4
990,848 + +0.4
990,848 + +0.4
990,848 + +0.2
990,848 + -1.0
990,849 - +0.5
990,849 - -0.4
990,849 - +1.6
990,940 - Psyr_0869 0.20 +0.4
991,111 - Psyr_0869 0.59 -0.8
991,111 - Psyr_0869 0.59 -0.4
991,393 + -0.4
991,393 + +1.2
991,393 + -0.8
991,393 + -2.2
991,394 - +0.8
991,394 - +1.6
991,394 - +2.0
991,394 - -0.4
991,417 - +0.4
991,699 + Psyr_0870 0.27 +0.6
991,700 - Psyr_0870 0.27 -0.4
991,719 + Psyr_0870 0.29 -0.5
991,719 + Psyr_0870 0.29 +0.7
991,719 + Psyr_0870 0.29 +0.6
991,719 + Psyr_0870 0.29 +0.9
991,719 + Psyr_0870 0.29 -0.7
991,719 + Psyr_0870 0.29 +0.2
991,720 - Psyr_0870 0.29 -1.4
991,720 - Psyr_0870 0.29 +0.4
991,720 - Psyr_0870 0.29 +0.2
991,720 - Psyr_0870 0.29 -0.2
991,720 - Psyr_0870 0.29 -0.3
991,720 - Psyr_0870 0.29 +0.4
991,720 - Psyr_0870 0.29 +0.6
991,731 + Psyr_0870 0.30 -0.1
991,732 - Psyr_0870 0.30 +0.6
991,917 + Psyr_0870 0.46 -0.2
991,917 + Psyr_0870 0.46 -0.6
991,918 - Psyr_0870 0.46 +0.4
991,918 - Psyr_0870 0.46 +0.1
991,918 - Psyr_0870 0.46 +0.6
991,918 - Psyr_0870 0.46 -0.0
991,918 - Psyr_0870 0.46 +0.6
991,947 + Psyr_0870 0.48 +0.7
991,948 - Psyr_0870 0.48 -0.7
992,034 + Psyr_0870 0.55 +0.1
992,034 + Psyr_0870 0.55 +0.2
992,034 + Psyr_0870 0.55 -0.0
992,034 + Psyr_0870 0.55 +0.2
992,034 + Psyr_0870 0.55 +0.6
992,034 + Psyr_0870 0.55 +0.6
992,034 + Psyr_0870 0.55 +0.2
992,034 + Psyr_0870 0.55 -1.0
992,034 + Psyr_0870 0.55 -0.2
992,034 + Psyr_0870 0.55 -0.2
992,034 + Psyr_0870 0.55 +0.2
992,034 + Psyr_0870 0.55 -0.2
992,034 + Psyr_0870 0.55 +0.5
992,034 + Psyr_0870 0.55 +1.1
992,034 + Psyr_0870 0.55 -0.3
992,034 + Psyr_0870 0.55 +0.6
992,034 + Psyr_0870 0.55 +0.4
992,035 - Psyr_0870 0.55 -2.0
992,035 - Psyr_0870 0.55 +0.6
992,035 - Psyr_0870 0.55 +0.2
992,035 - Psyr_0870 0.55 +0.6
992,035 - Psyr_0870 0.55 +0.7
992,035 - Psyr_0870 0.55 +1.0
992,035 - Psyr_0870 0.55 +0.6
992,035 - Psyr_0870 0.55 +0.4
992,035 - Psyr_0870 0.55 +1.7
992,035 - Psyr_0870 0.55 -1.6
992,035 - Psyr_0870 0.55 +0.7
992,035 - Psyr_0870 0.55 -0.0
992,035 - Psyr_0870 0.55 +0.0
992,035 - Psyr_0870 0.55 -0.0
992,035 - Psyr_0870 0.55 +1.0
992,035 - Psyr_0870 0.55 -1.1
992,035 - Psyr_0870 0.55 +0.2
992,035 - Psyr_0870 0.55 +0.4
992,035 - Psyr_0870 0.55 +0.2
992,035 - Psyr_0870 0.55 -0.2
992,035 - Psyr_0870 0.55 -0.3
992,035 - Psyr_0870 0.55 +0.2
992,066 + Psyr_0870 0.58 +1.4
992,067 - Psyr_0870 0.58 +0.1
992,067 - Psyr_0870 0.58 +2.3
992,067 - Psyr_0870 0.58 +0.6
992,067 - Psyr_0870 0.58 +0.8
992,118 + Psyr_0870 0.62 +0.6
992,119 - Psyr_0870 0.62 +0.9
992,148 + Psyr_0870 0.65 -0.7
992,149 - Psyr_0870 0.65 +0.1
992,210 + Psyr_0870 0.70 +0.4
992,251 + Psyr_0870 0.74 -1.1
992,284 + Psyr_0870 0.76 -0.1

Or see this region's nucleotide sequence