Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS30485

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS30480 and PFLU_RS30485 overlap by 4 nucleotidesPFLU_RS30485 and PFLU_RS07840 are separated by 215 nucleotidesPFLU_RS07840 and PFLU_RS07845 are separated by 24 nucleotides PFLU_RS30480: PFLU_RS30480 - hypothetical protein, at 1,744,680 to 1,745,666 _RS30480 PFLU_RS30485: PFLU_RS30485 - hypothetical protein, at 1,745,663 to 1,746,196 _RS30485 PFLU_RS07840: PFLU_RS07840 - hypothetical protein, at 1,746,412 to 1,747,092 _RS07840 PFLU_RS07845: PFLU_RS07845 - hypothetical protein, at 1,747,117 to 1,747,455 _RS07845 Position (kb) 1745 1746 1747Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1744.666 kb on - strandat 1744.682 kb on - strandat 1744.682 kb on - strandat 1744.702 kb on - strandat 1744.745 kb on + strandat 1744.748 kb on + strandat 1745.090 kb on + strand, within PFLU_RS30480at 1745.090 kb on + strand, within PFLU_RS30480at 1745.091 kb on - strand, within PFLU_RS30480at 1745.373 kb on + strand, within PFLU_RS30480at 1745.486 kb on + strand, within PFLU_RS30480at 1745.507 kb on + strand, within PFLU_RS30480at 1745.535 kb on + strand, within PFLU_RS30480at 1745.535 kb on + strand, within PFLU_RS30480at 1745.541 kb on + strand, within PFLU_RS30480at 1745.542 kb on - strand, within PFLU_RS30480at 1745.542 kb on - strand, within PFLU_RS30480at 1745.561 kb on + strand, within PFLU_RS30480at 1745.572 kb on - strandat 1745.575 kb on + strandat 1745.576 kb on - strandat 1745.576 kb on - strandat 1745.576 kb on - strandat 1745.582 kb on + strandat 1745.600 kb on - strandat 1745.772 kb on - strand, within PFLU_RS30485at 1745.804 kb on + strand, within PFLU_RS30485at 1745.810 kb on + strand, within PFLU_RS30485at 1745.859 kb on - strand, within PFLU_RS30485at 1745.928 kb on - strand, within PFLU_RS30485at 1746.231 kb on + strandat 1746.232 kb on - strandat 1746.252 kb on - strandat 1746.329 kb on + strandat 1746.370 kb on + strandat 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.582 kb on + strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.583 kb on - strand, within PFLU_RS07840at 1746.586 kb on + strand, within PFLU_RS07840at 1746.586 kb on + strand, within PFLU_RS07840at 1746.586 kb on + strand, within PFLU_RS07840at 1746.587 kb on - strand, within PFLU_RS07840at 1746.587 kb on - strand, within PFLU_RS07840at 1746.640 kb on - strand, within PFLU_RS07840at 1746.688 kb on + strand, within PFLU_RS07840at 1746.688 kb on + strand, within PFLU_RS07840at 1746.689 kb on - strand, within PFLU_RS07840at 1746.689 kb on - strand, within PFLU_RS07840at 1746.689 kb on - strand, within PFLU_RS07840at 1746.743 kb on + strand, within PFLU_RS07840at 1746.743 kb on + strand, within PFLU_RS07840at 1746.743 kb on + strand, within PFLU_RS07840at 1746.743 kb on + strand, within PFLU_RS07840at 1746.743 kb on + strand, within PFLU_RS07840at 1746.744 kb on - strand, within PFLU_RS07840at 1746.744 kb on - strand, within PFLU_RS07840at 1746.744 kb on - strand, within PFLU_RS07840at 1746.796 kb on - strand, within PFLU_RS07840at 1746.796 kb on - strand, within PFLU_RS07840at 1746.828 kb on + strand, within PFLU_RS07840at 1746.931 kb on + strand, within PFLU_RS07840at 1746.931 kb on + strand, within PFLU_RS07840at 1746.932 kb on - strand, within PFLU_RS07840at 1746.932 kb on - strand, within PFLU_RS07840at 1746.932 kb on - strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.952 kb on + strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.953 kb on - strand, within PFLU_RS07840at 1746.955 kb on + strand, within PFLU_RS07840at 1746.955 kb on + strand, within PFLU_RS07840at 1746.986 kb on + strand, within PFLU_RS07840at 1747.118 kb on + strandat 1747.118 kb on + strandat 1747.118 kb on + strandat 1747.119 kb on - strandat 1747.119 kb on - strandat 1747.119 kb on - strandat 1747.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,744,666 - +0.8
1,744,682 - -1.8
1,744,682 - +0.8
1,744,702 - -1.0
1,744,745 + -0.2
1,744,748 + +0.9
1,745,090 + PFLU_RS30480 0.42 -1.5
1,745,090 + PFLU_RS30480 0.42 +0.7
1,745,091 - PFLU_RS30480 0.42 +0.2
1,745,373 + PFLU_RS30480 0.70 +0.5
1,745,486 + PFLU_RS30480 0.82 -0.8
1,745,507 + PFLU_RS30480 0.84 -1.7
1,745,535 + PFLU_RS30480 0.87 -0.0
1,745,535 + PFLU_RS30480 0.87 +0.0
1,745,541 + PFLU_RS30480 0.87 -1.1
1,745,542 - PFLU_RS30480 0.87 -0.0
1,745,542 - PFLU_RS30480 0.87 -0.3
1,745,561 + PFLU_RS30480 0.89 -0.8
1,745,572 - -0.8
1,745,575 + -0.1
1,745,576 - +1.3
1,745,576 - +0.3
1,745,576 - +1.5
1,745,582 + +1.0
1,745,600 - +0.0
1,745,772 - PFLU_RS30485 0.20 +2.1
1,745,804 + PFLU_RS30485 0.26 +0.5
1,745,810 + PFLU_RS30485 0.28 -0.7
1,745,859 - PFLU_RS30485 0.37 +0.7
1,745,928 - PFLU_RS30485 0.50 +0.3
1,746,231 + +0.6
1,746,232 - +0.8
1,746,252 - +0.6
1,746,329 + +1.5
1,746,370 + -0.3
1,746,582 + PFLU_RS07840 0.25 +0.5
1,746,582 + PFLU_RS07840 0.25 +1.9
1,746,582 + PFLU_RS07840 0.25 -0.3
1,746,582 + PFLU_RS07840 0.25 -0.4
1,746,582 + PFLU_RS07840 0.25 -1.0
1,746,582 + PFLU_RS07840 0.25 +0.6
1,746,582 + PFLU_RS07840 0.25 -0.0
1,746,582 + PFLU_RS07840 0.25 -2.5
1,746,582 + PFLU_RS07840 0.25 -1.8
1,746,582 + PFLU_RS07840 0.25 +0.3
1,746,582 + PFLU_RS07840 0.25 -0.7
1,746,582 + PFLU_RS07840 0.25 -1.1
1,746,582 + PFLU_RS07840 0.25 +1.5
1,746,582 + PFLU_RS07840 0.25 +0.3
1,746,583 - PFLU_RS07840 0.25 -1.9
1,746,583 - PFLU_RS07840 0.25 +1.6
1,746,583 - PFLU_RS07840 0.25 +2.7
1,746,583 - PFLU_RS07840 0.25 -0.1
1,746,583 - PFLU_RS07840 0.25 +0.2
1,746,583 - PFLU_RS07840 0.25 +0.4
1,746,583 - PFLU_RS07840 0.25 -1.5
1,746,583 - PFLU_RS07840 0.25 -0.0
1,746,583 - PFLU_RS07840 0.25 +1.6
1,746,583 - PFLU_RS07840 0.25 +0.0
1,746,583 - PFLU_RS07840 0.25 +0.7
1,746,583 - PFLU_RS07840 0.25 +0.6
1,746,583 - PFLU_RS07840 0.25 +0.5
1,746,583 - PFLU_RS07840 0.25 -0.4
1,746,583 - PFLU_RS07840 0.25 +0.5
1,746,586 + PFLU_RS07840 0.26 +0.9
1,746,586 + PFLU_RS07840 0.26 -0.4
1,746,586 + PFLU_RS07840 0.26 +1.3
1,746,587 - PFLU_RS07840 0.26 +0.0
1,746,587 - PFLU_RS07840 0.26 +1.0
1,746,640 - PFLU_RS07840 0.33 -0.4
1,746,688 + PFLU_RS07840 0.41 +0.2
1,746,688 + PFLU_RS07840 0.41 -1.0
1,746,689 - PFLU_RS07840 0.41 -0.6
1,746,689 - PFLU_RS07840 0.41 +0.8
1,746,689 - PFLU_RS07840 0.41 -1.0
1,746,743 + PFLU_RS07840 0.49 -0.6
1,746,743 + PFLU_RS07840 0.49 -1.0
1,746,743 + PFLU_RS07840 0.49 +2.1
1,746,743 + PFLU_RS07840 0.49 +0.5
1,746,743 + PFLU_RS07840 0.49 +0.2
1,746,744 - PFLU_RS07840 0.49 -2.0
1,746,744 - PFLU_RS07840 0.49 -0.3
1,746,744 - PFLU_RS07840 0.49 +0.8
1,746,796 - PFLU_RS07840 0.56 -0.6
1,746,796 - PFLU_RS07840 0.56 +1.4
1,746,828 + PFLU_RS07840 0.61 +0.2
1,746,931 + PFLU_RS07840 0.76 -1.0
1,746,931 + PFLU_RS07840 0.76 -0.1
1,746,932 - PFLU_RS07840 0.76 -1.7
1,746,932 - PFLU_RS07840 0.76 +0.7
1,746,932 - PFLU_RS07840 0.76 +0.7
1,746,952 + PFLU_RS07840 0.79 -0.6
1,746,952 + PFLU_RS07840 0.79 -2.1
1,746,952 + PFLU_RS07840 0.79 +0.3
1,746,952 + PFLU_RS07840 0.79 -0.2
1,746,952 + PFLU_RS07840 0.79 +0.8
1,746,952 + PFLU_RS07840 0.79 +0.6
1,746,952 + PFLU_RS07840 0.79 -0.6
1,746,952 + PFLU_RS07840 0.79 -0.8
1,746,952 + PFLU_RS07840 0.79 -0.8
1,746,952 + PFLU_RS07840 0.79 +0.1
1,746,952 + PFLU_RS07840 0.79 +0.5
1,746,952 + PFLU_RS07840 0.79 +0.3
1,746,952 + PFLU_RS07840 0.79 +2.1
1,746,953 - PFLU_RS07840 0.79 -0.6
1,746,953 - PFLU_RS07840 0.79 -1.2
1,746,953 - PFLU_RS07840 0.79 +0.1
1,746,953 - PFLU_RS07840 0.79 -0.7
1,746,953 - PFLU_RS07840 0.79 -0.6
1,746,953 - PFLU_RS07840 0.79 +0.4
1,746,953 - PFLU_RS07840 0.79 -0.0
1,746,953 - PFLU_RS07840 0.79 -1.8
1,746,953 - PFLU_RS07840 0.79 -0.1
1,746,953 - PFLU_RS07840 0.79 +1.0
1,746,953 - PFLU_RS07840 0.79 +1.4
1,746,953 - PFLU_RS07840 0.79 +0.8
1,746,953 - PFLU_RS07840 0.79 -0.3
1,746,953 - PFLU_RS07840 0.79 -1.7
1,746,953 - PFLU_RS07840 0.79 -2.3
1,746,953 - PFLU_RS07840 0.79 +0.4
1,746,955 + PFLU_RS07840 0.80 -1.5
1,746,955 + PFLU_RS07840 0.80 -2.5
1,746,986 + PFLU_RS07840 0.84 -1.8
1,747,118 + +0.2
1,747,118 + +0.9
1,747,118 + -0.6
1,747,119 - +0.4
1,747,119 - -0.1
1,747,119 - -3.1
1,747,119 - -0.2

Or see this region's nucleotide sequence