Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03580 and PFLU_RS30380 are separated by 14 nucleotides PFLU_RS30380 and PFLU_RS03585 are separated by 1 nucleotides PFLU_RS03585 and PFLU_RS03590 are separated by 106 nucleotides PFLU_RS03590 and PFLU_RS30385 overlap by 1 nucleotides
PFLU_RS03580: PFLU_RS03580 - EscC/YscC/HrcC family type III secretion system outer membrane ring protein, at 823,771 to 825,912
_RS03580
PFLU_RS30380: PFLU_RS30380 - hypothetical protein, at 825,927 to 826,319
_RS30380
PFLU_RS03585: PFLU_RS03585 - hypothetical protein, at 826,321 to 826,536
_RS03585
PFLU_RS03590: PFLU_RS03590 - HrpE/YscL family type III secretion apparatus protein, at 826,643 to 827,218
_RS03590
PFLU_RS30385: PFLU_RS30385 - type III secretion protein, at 827,218 to 827,775
_RS30385
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 824.963 kb on + strand, within PFLU_RS03580 at 824.963 kb on + strand, within PFLU_RS03580 at 824.963 kb on + strand, within PFLU_RS03580 at 824.964 kb on - strand, within PFLU_RS03580 at 824.990 kb on + strand, within PFLU_RS03580 at 824.990 kb on + strand, within PFLU_RS03580 at 824.990 kb on + strand, within PFLU_RS03580 at 824.990 kb on + strand, within PFLU_RS03580 at 824.990 kb on + strand, within PFLU_RS03580 at 824.990 kb on + strand, within PFLU_RS03580 at 824.990 kb on + strand, within PFLU_RS03580 at 824.990 kb on + strand, within PFLU_RS03580 at 824.990 kb on + strand, within PFLU_RS03580 at 824.991 kb on - strand, within PFLU_RS03580 at 824.991 kb on - strand, within PFLU_RS03580 at 824.991 kb on - strand, within PFLU_RS03580 at 824.991 kb on - strand, within PFLU_RS03580 at 824.991 kb on - strand, within PFLU_RS03580 at 824.991 kb on - strand, within PFLU_RS03580 at 824.991 kb on - strand, within PFLU_RS03580 at 824.991 kb on - strand, within PFLU_RS03580 at 824.991 kb on - strand, within PFLU_RS03580 at 825.145 kb on + strand, within PFLU_RS03580 at 825.145 kb on + strand, within PFLU_RS03580 at 825.146 kb on - strand, within PFLU_RS03580 at 825.146 kb on - strand, within PFLU_RS03580 at 825.146 kb on - strand, within PFLU_RS03580 at 825.146 kb on - strand, within PFLU_RS03580 at 825.157 kb on + strand, within PFLU_RS03580 at 825.389 kb on + strand, within PFLU_RS03580 at 825.389 kb on + strand, within PFLU_RS03580 at 825.389 kb on + strand, within PFLU_RS03580 at 825.389 kb on + strand, within PFLU_RS03580 at 825.389 kb on + strand, within PFLU_RS03580 at 825.390 kb on - strand, within PFLU_RS03580 at 825.390 kb on - strand, within PFLU_RS03580 at 825.390 kb on - strand, within PFLU_RS03580 at 825.412 kb on + strand, within PFLU_RS03580 at 825.412 kb on + strand, within PFLU_RS03580 at 825.412 kb on + strand, within PFLU_RS03580 at 825.413 kb on - strand, within PFLU_RS03580 at 825.498 kb on + strand, within PFLU_RS03580 at 825.498 kb on + strand, within PFLU_RS03580 at 825.498 kb on + strand, within PFLU_RS03580 at 825.569 kb on + strand, within PFLU_RS03580 at 825.569 kb on + strand, within PFLU_RS03580 at 825.570 kb on - strand, within PFLU_RS03580 at 825.570 kb on - strand, within PFLU_RS03580 at 825.575 kb on + strand, within PFLU_RS03580 at 825.575 kb on + strand, within PFLU_RS03580 at 825.576 kb on - strand, within PFLU_RS03580 at 825.576 kb on - strand, within PFLU_RS03580 at 825.576 kb on - strand, within PFLU_RS03580 at 825.606 kb on + strand, within PFLU_RS03580 at 825.724 kb on + strand at 825.746 kb on + strand at 825.752 kb on + strand at 825.752 kb on + strand at 825.753 kb on - strand at 825.753 kb on - strand at 825.753 kb on - strand at 825.790 kb on + strand at 825.790 kb on + strand at 825.790 kb on + strand at 825.811 kb on + strand at 825.812 kb on - strand at 825.812 kb on - strand at 825.820 kb on + strand at 825.820 kb on + strand at 825.821 kb on - strand at 825.823 kb on + strand at 825.823 kb on + strand at 825.823 kb on + strand at 825.823 kb on + strand at 825.823 kb on + strand at 825.824 kb on - strand at 825.824 kb on - strand at 825.824 kb on - strand at 825.876 kb on + strand at 825.888 kb on + strand at 825.889 kb on - strand at 825.889 kb on - strand at 825.907 kb on - strand at 825.907 kb on - strand at 825.913 kb on - strand at 825.913 kb on - strand at 825.928 kb on + strand at 825.946 kb on - strand at 825.946 kb on - strand at 825.978 kb on - strand, within PFLU_RS30380 at 826.007 kb on + strand, within PFLU_RS30380 at 826.007 kb on + strand, within PFLU_RS30380 at 826.007 kb on + strand, within PFLU_RS30380 at 826.008 kb on - strand, within PFLU_RS30380 at 826.008 kb on - strand, within PFLU_RS30380 at 826.103 kb on + strand, within PFLU_RS30380 at 826.103 kb on + strand, within PFLU_RS30380 at 826.103 kb on + strand, within PFLU_RS30380 at 826.103 kb on + strand, within PFLU_RS30380 at 826.210 kb on + strand, within PFLU_RS30380 at 826.244 kb on + strand, within PFLU_RS30380 at 826.308 kb on - strand at 826.379 kb on - strand, within PFLU_RS03585 at 826.382 kb on + strand, within PFLU_RS03585 at 826.411 kb on + strand, within PFLU_RS03585 at 826.422 kb on - strand, within PFLU_RS03585 at 826.536 kb on + strand at 826.540 kb on + strand at 826.541 kb on - strand at 826.571 kb on + strand at 826.571 kb on + strand at 826.574 kb on + strand at 826.574 kb on + strand at 826.609 kb on + strand at 826.657 kb on + strand at 826.788 kb on + strand, within PFLU_RS03590 at 826.788 kb on + strand, within PFLU_RS03590 at 826.789 kb on - strand, within PFLU_RS03590 at 826.789 kb on - strand, within PFLU_RS03590 at 826.789 kb on - strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.796 kb on + strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.797 kb on - strand, within PFLU_RS03590 at 826.826 kb on + strand, within PFLU_RS03590 at 826.827 kb on - strand, within PFLU_RS03590 at 826.827 kb on - strand, within PFLU_RS03590 at 826.827 kb on - strand, within PFLU_RS03590 at 826.827 kb on - strand, within PFLU_RS03590 at 826.827 kb on - strand, within PFLU_RS03590 at 826.847 kb on + strand, within PFLU_RS03590 at 826.856 kb on - strand, within PFLU_RS03590 at 826.871 kb on + strand, within PFLU_RS03590 at 826.871 kb on + strand, within PFLU_RS03590 at 826.871 kb on + strand, within PFLU_RS03590 at 826.872 kb on - strand, within PFLU_RS03590 at 826.872 kb on - strand, within PFLU_RS03590 at 826.872 kb on - strand, within PFLU_RS03590 at 826.872 kb on - strand, within PFLU_RS03590 at 826.872 kb on - strand, within PFLU_RS03590 at 826.872 kb on - strand, within PFLU_RS03590 at 826.872 kb on - strand, within PFLU_RS03590 at 826.872 kb on - strand, within PFLU_RS03590 at 826.940 kb on + strand, within PFLU_RS03590 at 826.941 kb on - strand, within PFLU_RS03590 at 826.941 kb on - strand, within PFLU_RS03590 at 827.030 kb on + strand, within PFLU_RS03590 at 827.031 kb on - strand, within PFLU_RS03590 at 827.079 kb on - strand, within PFLU_RS03590 at 827.144 kb on + strand, within PFLU_RS03590 at 827.144 kb on + strand, within PFLU_RS03590 at 827.144 kb on + strand, within PFLU_RS03590 at 827.144 kb on + strand, within PFLU_RS03590 at 827.145 kb on - strand, within PFLU_RS03590 at 827.207 kb on + strand at 827.207 kb on + strand at 827.207 kb on + strand at 827.207 kb on + strand at 827.207 kb on + strand at 827.207 kb on + strand at 827.207 kb on + strand at 827.207 kb on + strand at 827.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 824,963 + PFLU_RS03580 0.56 -0.6 824,963 + PFLU_RS03580 0.56 -1.5 824,963 + PFLU_RS03580 0.56 -1.3 824,964 - PFLU_RS03580 0.56 -0.8 824,990 + PFLU_RS03580 0.57 +0.1 824,990 + PFLU_RS03580 0.57 +0.2 824,990 + PFLU_RS03580 0.57 +1.1 824,990 + PFLU_RS03580 0.57 -0.2 824,990 + PFLU_RS03580 0.57 -0.7 824,990 + PFLU_RS03580 0.57 +1.1 824,990 + PFLU_RS03580 0.57 +0.4 824,990 + PFLU_RS03580 0.57 +0.4 824,990 + PFLU_RS03580 0.57 -0.4 824,991 - PFLU_RS03580 0.57 +0.3 824,991 - PFLU_RS03580 0.57 +0.4 824,991 - PFLU_RS03580 0.57 +0.5 824,991 - PFLU_RS03580 0.57 +1.4 824,991 - PFLU_RS03580 0.57 -0.5 824,991 - PFLU_RS03580 0.57 -2.1 824,991 - PFLU_RS03580 0.57 +0.1 824,991 - PFLU_RS03580 0.57 +0.5 824,991 - PFLU_RS03580 0.57 -1.1 825,145 + PFLU_RS03580 0.64 +0.9 825,145 + PFLU_RS03580 0.64 -0.8 825,146 - PFLU_RS03580 0.64 +1.9 825,146 - PFLU_RS03580 0.64 +1.4 825,146 - PFLU_RS03580 0.64 +0.5 825,146 - PFLU_RS03580 0.64 -2.3 825,157 + PFLU_RS03580 0.65 +0.6 825,389 + PFLU_RS03580 0.76 -1.1 825,389 + PFLU_RS03580 0.76 +1.4 825,389 + PFLU_RS03580 0.76 +0.8 825,389 + PFLU_RS03580 0.76 -0.1 825,389 + PFLU_RS03580 0.76 -0.5 825,390 - PFLU_RS03580 0.76 +0.7 825,390 - PFLU_RS03580 0.76 +0.5 825,390 - PFLU_RS03580 0.76 +0.1 825,412 + PFLU_RS03580 0.77 -1.2 825,412 + PFLU_RS03580 0.77 -0.8 825,412 + PFLU_RS03580 0.77 -2.5 825,413 - PFLU_RS03580 0.77 -0.2 825,498 + PFLU_RS03580 0.81 -2.0 825,498 + PFLU_RS03580 0.81 +0.2 825,498 + PFLU_RS03580 0.81 +0.0 825,569 + PFLU_RS03580 0.84 +0.4 825,569 + PFLU_RS03580 0.84 -1.3 825,570 - PFLU_RS03580 0.84 -0.6 825,570 - PFLU_RS03580 0.84 +0.0 825,575 + PFLU_RS03580 0.84 -0.1 825,575 + PFLU_RS03580 0.84 -2.1 825,576 - PFLU_RS03580 0.84 +1.0 825,576 - PFLU_RS03580 0.84 +0.2 825,576 - PFLU_RS03580 0.84 +0.4 825,606 + PFLU_RS03580 0.86 -0.7 825,724 + +0.7 825,746 + +1.1 825,752 + +0.1 825,752 + -2.3 825,753 - -0.3 825,753 - +0.1 825,753 - +0.2 825,790 + -2.2 825,790 + +0.4 825,790 + -2.8 825,811 + -0.7 825,812 - -0.5 825,812 - +0.9 825,820 + -2.1 825,820 + -0.4 825,821 - -1.9 825,823 + -1.4 825,823 + -0.2 825,823 + +0.6 825,823 + -0.0 825,823 + +0.0 825,824 - -1.6 825,824 - +1.0 825,824 - -2.7 825,876 + -0.6 825,888 + +0.0 825,889 - +1.1 825,889 - +0.3 825,907 - -1.1 825,907 - +1.3 825,913 - -1.2 825,913 - +1.5 825,928 + +0.2 825,946 - +1.0 825,946 - +0.9 825,978 - PFLU_RS30380 0.13 -0.0 826,007 + PFLU_RS30380 0.20 +0.5 826,007 + PFLU_RS30380 0.20 -0.1 826,007 + PFLU_RS30380 0.20 +2.3 826,008 - PFLU_RS30380 0.21 +0.7 826,008 - PFLU_RS30380 0.21 +0.6 826,103 + PFLU_RS30380 0.45 +1.3 826,103 + PFLU_RS30380 0.45 -1.3 826,103 + PFLU_RS30380 0.45 +0.1 826,103 + PFLU_RS30380 0.45 +0.8 826,210 + PFLU_RS30380 0.72 -1.4 826,244 + PFLU_RS30380 0.81 +1.5 826,308 - +0.3 826,379 - PFLU_RS03585 0.27 +0.3 826,382 + PFLU_RS03585 0.28 +1.0 826,411 + PFLU_RS03585 0.42 -0.1 826,422 - PFLU_RS03585 0.47 +0.2 826,536 + +0.2 826,540 + -0.3 826,541 - +0.4 826,571 + -0.2 826,571 + +0.8 826,574 + -1.3 826,574 + -0.9 826,609 + +1.3 826,657 + +0.9 826,788 + PFLU_RS03590 0.25 +0.2 826,788 + PFLU_RS03590 0.25 -1.0 826,789 - PFLU_RS03590 0.25 -0.5 826,789 - PFLU_RS03590 0.25 +0.1 826,789 - PFLU_RS03590 0.25 +2.9 826,796 + PFLU_RS03590 0.27 -0.5 826,796 + PFLU_RS03590 0.27 -0.8 826,796 + PFLU_RS03590 0.27 -0.9 826,796 + PFLU_RS03590 0.27 -2.0 826,796 + PFLU_RS03590 0.27 +2.2 826,796 + PFLU_RS03590 0.27 +0.3 826,796 + PFLU_RS03590 0.27 +1.3 826,796 + PFLU_RS03590 0.27 -0.5 826,796 + PFLU_RS03590 0.27 -0.8 826,796 + PFLU_RS03590 0.27 +0.6 826,796 + PFLU_RS03590 0.27 +1.3 826,796 + PFLU_RS03590 0.27 -1.0 826,796 + PFLU_RS03590 0.27 +0.3 826,796 + PFLU_RS03590 0.27 -1.9 826,796 + PFLU_RS03590 0.27 +0.1 826,796 + PFLU_RS03590 0.27 -0.0 826,797 - PFLU_RS03590 0.27 -2.6 826,797 - PFLU_RS03590 0.27 +1.2 826,797 - PFLU_RS03590 0.27 +0.7 826,797 - PFLU_RS03590 0.27 -0.5 826,797 - PFLU_RS03590 0.27 -0.2 826,797 - PFLU_RS03590 0.27 -0.7 826,797 - PFLU_RS03590 0.27 +1.2 826,797 - PFLU_RS03590 0.27 +0.2 826,797 - PFLU_RS03590 0.27 +0.4 826,797 - PFLU_RS03590 0.27 -0.2 826,797 - PFLU_RS03590 0.27 +0.1 826,826 + PFLU_RS03590 0.32 -0.7 826,827 - PFLU_RS03590 0.32 +1.5 826,827 - PFLU_RS03590 0.32 -1.1 826,827 - PFLU_RS03590 0.32 -0.4 826,827 - PFLU_RS03590 0.32 +1.2 826,827 - PFLU_RS03590 0.32 -1.9 826,847 + PFLU_RS03590 0.35 -0.5 826,856 - PFLU_RS03590 0.37 +0.0 826,871 + PFLU_RS03590 0.40 +0.8 826,871 + PFLU_RS03590 0.40 -0.6 826,871 + PFLU_RS03590 0.40 -1.0 826,872 - PFLU_RS03590 0.40 -1.1 826,872 - PFLU_RS03590 0.40 +0.3 826,872 - PFLU_RS03590 0.40 +1.9 826,872 - PFLU_RS03590 0.40 +0.5 826,872 - PFLU_RS03590 0.40 +0.0 826,872 - PFLU_RS03590 0.40 -0.5 826,872 - PFLU_RS03590 0.40 +0.9 826,872 - PFLU_RS03590 0.40 +1.0 826,940 + PFLU_RS03590 0.52 +0.4 826,941 - PFLU_RS03590 0.52 +0.2 826,941 - PFLU_RS03590 0.52 -1.1 827,030 + PFLU_RS03590 0.67 +1.4 827,031 - PFLU_RS03590 0.67 +0.2 827,079 - PFLU_RS03590 0.76 -0.1 827,144 + PFLU_RS03590 0.87 +1.2 827,144 + PFLU_RS03590 0.87 +1.5 827,144 + PFLU_RS03590 0.87 +0.9 827,144 + PFLU_RS03590 0.87 +0.9 827,145 - PFLU_RS03590 0.87 +0.6 827,207 + +0.7 827,207 + +0.0 827,207 + +1.7 827,207 + +0.7 827,207 + +0.8 827,207 + +0.6 827,207 + +0.2 827,207 + -0.8 827,208 - +0.6
Or see this region's nucleotide sequence