Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28645

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
6,372,787	+		PFLU_RS28640	0.10	-0.6
6,372,787	+		PFLU_RS28640	0.10	+0.7
6,372,788	-		PFLU_RS28640	0.10	+1.0
6,372,839	-		PFLU_RS28640	0.17	+1.2
6,372,839	-		PFLU_RS28640	0.17	-0.2
6,372,839	-		PFLU_RS28640	0.17	-0.2
6,373,003	+		PFLU_RS28640	0.39	-0.4
6,373,036	+		PFLU_RS28640	0.43	+0.1
6,373,037	-		PFLU_RS28640	0.44	+0.7
6,373,084	+		PFLU_RS28640	0.50	-0.2
6,373,084	+		PFLU_RS28640	0.50	+0.1
6,373,084	+		PFLU_RS28640	0.50	-0.8
6,373,084	+		PFLU_RS28640	0.50	+0.0
6,373,084	+		PFLU_RS28640	0.50	+1.0
6,373,084	+		PFLU_RS28640	0.50	-1.0
6,373,084	+		PFLU_RS28640	0.50	+0.2
6,373,084	+		PFLU_RS28640	0.50	-0.6
6,373,085	-		PFLU_RS28640	0.50	+0.2
6,373,085	-		PFLU_RS28640	0.50	-0.1
6,373,085	-		PFLU_RS28640	0.50	+1.9
6,373,085	-		PFLU_RS28640	0.50	-0.5
6,373,085	-		PFLU_RS28640	0.50	-0.1
6,373,085	-		PFLU_RS28640	0.50	+0.4
6,373,085	-		PFLU_RS28640	0.50	-1.3
6,373,085	-		PFLU_RS28640	0.50	+0.6
6,373,085	-		PFLU_RS28640	0.50	-2.4
6,373,085	-		PFLU_RS28640	0.50	-0.4
6,373,085	-		PFLU_RS28640	0.50	-1.1
6,373,098	+		PFLU_RS28640	0.52	+1.1
6,373,129	+		PFLU_RS28640	0.56	-0.3
6,373,129	+		PFLU_RS28640	0.56	+0.9
6,373,167	+		PFLU_RS28640	0.61	+0.2
6,373,167	+		PFLU_RS28640	0.61	-0.5
6,373,167	+		PFLU_RS28640	0.61	+0.6
6,373,167	+		PFLU_RS28640	0.61	+0.4
6,373,167	+		PFLU_RS28640	0.61	+0.4
6,373,168	-		PFLU_RS28640	0.61	+0.6
6,373,168	-		PFLU_RS28640	0.61	+0.3
6,373,202	+		PFLU_RS28640	0.66	+0.5
6,373,203	-		PFLU_RS28640	0.66	+0.3
6,373,203	-		PFLU_RS28640	0.66	-1.3
6,373,203	-		PFLU_RS28640	0.66	-2.8
6,373,203	-		PFLU_RS28640	0.66	-1.0
6,373,241	+		PFLU_RS28640	0.71	-0.4
6,373,241	+		PFLU_RS28640	0.71	+0.1
6,373,242	-		PFLU_RS28640	0.71	-0.1
6,373,242	-		PFLU_RS28640	0.71	-0.1
6,373,242	-		PFLU_RS28640	0.71	+0.4
6,373,281	+		PFLU_RS28640	0.76	-0.0
6,373,281	+		PFLU_RS28640	0.76	-1.3
6,373,281	+		PFLU_RS28640	0.76	+0.4
6,373,282	-		PFLU_RS28640	0.76	+0.2
6,373,282	-		PFLU_RS28640	0.76	+0.8
6,373,313	+		PFLU_RS28640	0.80	-0.4
6,373,313	+		PFLU_RS28640	0.80	-1.0
6,373,313	+		PFLU_RS28640	0.80	+1.0
6,373,314	-		PFLU_RS28640	0.81	-0.0
6,373,326	+		PFLU_RS28640	0.82	-0.3
6,373,343	-		PFLU_RS28640	0.84	+0.1
6,373,442	+				-0.2
6,373,442	+				+1.0
6,373,443	-				-1.0
6,373,443	-				-1.2
6,373,457	-				-1.4
6,373,457	-				+0.2
6,373,457	-				+1.0
6,373,457	-				-0.0
6,373,457	-				+0.3
6,373,517	+				+1.2
6,373,517	+				-0.6
6,373,518	-				+0.9
6,373,518	-				-0.8
6,373,518	-				+0.9
6,373,518	-				-0.1
6,373,541	-				+0.5
6,373,541	-				+0.5
6,373,541	-				-0.2
6,373,541	-				+0.7
6,373,541	-				-0.9
6,373,541	-				+0.1
6,373,541	-				+0.1
6,373,541	-				+0.3
6,373,541	-				-0.4
6,373,541	-				-1.0
6,373,541	-				-0.6
6,373,541	-				-0.2
6,373,541	-				+0.6
6,373,541	-				-0.3
6,373,544	-				+1.0
6,373,544	-				+0.2
6,373,584	+				+0.4
6,373,645	+				+0.1
6,373,646	-				+0.1
6,373,646	-				+0.3
6,373,669	-				+0.5
6,373,669	-				+0.3
6,373,669	-				+0.9
6,373,669	-				+0.6
6,373,669	-				+1.0
6,373,712	+				-0.2
6,373,712	+				-0.6
6,373,712	+				-0.2
6,373,712	+				-0.5
6,373,814	+				-2.4
6,373,815	-				-2.9
6,373,944	-				-3.9
6,374,068	+		PFLU_RS28645	0.15	-3.0
6,374,068	+		PFLU_RS28645	0.15	-1.7
6,374,069	-		PFLU_RS28645	0.15	-3.1
6,374,069	-		PFLU_RS28645	0.15	-3.5
6,374,075	-		PFLU_RS28645	0.15	-0.5
6,374,185	+		PFLU_RS28645	0.20	-0.3
6,374,185	+		PFLU_RS28645	0.20	-3.7
6,374,186	-		PFLU_RS28645	0.20	-4.0
6,374,253	+		PFLU_RS28645	0.23	-3.8
6,374,254	-		PFLU_RS28645	0.23	-3.8
6,374,379	+		PFLU_RS28645	0.28	-2.4
6,374,379	+		PFLU_RS28645	0.28	-2.0
6,374,379	+		PFLU_RS28645	0.28	-1.5
6,374,380	-		PFLU_RS28645	0.28	-2.1
6,374,380	-		PFLU_RS28645	0.28	-3.0
6,374,450	+		PFLU_RS28645	0.31	-2.0
6,374,461	+		PFLU_RS28645	0.32	+1.1
6,374,461	+		PFLU_RS28645	0.32	-3.0
6,374,461	+		PFLU_RS28645	0.32	-0.9
6,374,461	+		PFLU_RS28645	0.32	-4.0
6,374,461	+		PFLU_RS28645	0.32	-3.2
6,374,462	-		PFLU_RS28645	0.32	-4.6
6,374,462	-		PFLU_RS28645	0.32	-2.4
6,374,462	-		PFLU_RS28645	0.32	-2.5
6,374,462	-		PFLU_RS28645	0.32	-1.1
6,374,542	+		PFLU_RS28645	0.35	-2.6
6,374,609	-		PFLU_RS28645	0.38	-2.4
6,374,609	-		PFLU_RS28645	0.38	-4.0
6,374,669	+		PFLU_RS28645	0.41	-2.1
6,374,673	+		PFLU_RS28645	0.41	-2.3
6,374,673	+		PFLU_RS28645	0.41	-1.7
6,374,673	+		PFLU_RS28645	0.41	-3.3
6,374,673	+		PFLU_RS28645	0.41	+0.4
6,374,674	-		PFLU_RS28645	0.41	-2.0
6,374,674	-		PFLU_RS28645	0.41	-3.9
6,374,674	-		PFLU_RS28645	0.41	-2.8
6,374,674	-		PFLU_RS28645	0.41	-3.5
6,374,674	-		PFLU_RS28645	0.41	-3.3
6,374,674	-		PFLU_RS28645	0.41	-3.5
6,374,674	-		PFLU_RS28645	0.41	-2.1
6,374,807	+		PFLU_RS28645	0.47	-1.5
6,374,808	-		PFLU_RS28645	0.47	-2.7
6,374,863	+		PFLU_RS28645	0.50	-0.4
6,374,863	+		PFLU_RS28645	0.50	-2.0
6,374,863	+		PFLU_RS28645	0.50	-4.1
6,374,933	+		PFLU_RS28645	0.53	-1.9
6,374,934	-		PFLU_RS28645	0.53	-2.0
6,375,070	+		PFLU_RS28645	0.59	-2.2
6,375,070	+		PFLU_RS28645	0.59	-1.4
6,375,071	-		PFLU_RS28645	0.59	-2.6
6,375,124	+		PFLU_RS28645	0.61	-1.2
6,375,125	-		PFLU_RS28645	0.61	-3.5
6,375,227	+		PFLU_RS28645	0.65	-1.6
6,375,259	+		PFLU_RS28645	0.67	-1.7
6,375,259	+		PFLU_RS28645	0.67	-1.6
6,375,260	-		PFLU_RS28645	0.67	-2.7
6,375,336	+		PFLU_RS28645	0.70	-2.5
6,375,337	-		PFLU_RS28645	0.70	-0.8
6,375,337	-		PFLU_RS28645	0.70	-1.5
6,375,721	+		PFLU_RS28645	0.87	-1.4
6,375,892	+				-3.6
6,375,892	+				-1.5
6,375,892	+				-3.8
6,375,941	+				-3.3
6,375,941	+				-3.4
6,375,978	-				-0.1
6,375,978	-				-1.5
6,376,005	-				-2.0
6,376,005	-				-2.9
6,376,005	-				-4.3
6,376,048	+				-1.6
6,376,048	+				-2.5
6,376,086	-		PFLU_RS28650	0.10	-1.1
6,376,086	-		PFLU_RS28650	0.10	-0.4
6,376,086	-		PFLU_RS28650	0.10	-0.3
6,376,086	-		PFLU_RS28650	0.10	-2.2
6,376,130	+		PFLU_RS28650	0.20	-0.5
6,376,130	+		PFLU_RS28650	0.20	-1.6
6,376,130	+		PFLU_RS28650	0.20	-1.2
6,376,130	+		PFLU_RS28650	0.20	-1.5
6,376,130	+		PFLU_RS28650	0.20	-0.5
6,376,131	-		PFLU_RS28650	0.20	-1.2
6,376,131	-		PFLU_RS28650	0.20	-2.4
6,376,131	-		PFLU_RS28650	0.20	-0.4
6,376,131	-		PFLU_RS28650	0.20	+2.1
6,376,131	-		PFLU_RS28650	0.20	-1.7
6,376,305	+		PFLU_RS28650	0.56	-1.8
6,376,321	+		PFLU_RS28650	0.59	-0.5
6,376,321	+		PFLU_RS28650	0.59	-0.2
6,376,322	-		PFLU_RS28650	0.60	-2.7
6,376,322	-		PFLU_RS28650	0.60	-1.8
6,376,322	-		PFLU_RS28650	0.60	+0.5
6,376,364	+		PFLU_RS28650	0.68	-1.9
6,376,364	+		PFLU_RS28650	0.68	-1.6
6,376,364	+		PFLU_RS28650	0.68	-0.9
6,376,365	-		PFLU_RS28650	0.69	-1.1
6,376,365	-		PFLU_RS28650	0.69	-2.0
6,376,365	-		PFLU_RS28650	0.69	-1.9
6,376,365	-		PFLU_RS28650	0.69	+0.5
6,376,447	+		PFLU_RS28650	0.86	-1.4
6,376,447	+		PFLU_RS28650	0.86	-1.9
6,376,476	+				-1.2
6,376,477	-				-2.1
6,376,477	-				-2.4
6,376,488	+				-1.4
6,376,488	+				-2.9
6,376,489	-				+0.3
6,376,586	+				+0.0
6,376,586	+				+0.4
6,376,586	+				-0.0
6,376,586	+				+0.8
6,376,586	+				-0.5
6,376,586	+				+0.1
6,376,586	+				-0.2
6,376,586	+				+0.3
6,376,586	+				+0.9
6,376,586	+				-0.8
6,376,586	+				-1.2
6,376,586	+				+0.3
6,376,586	+				+0.3
6,376,586	+				-0.3
6,376,586	+				+0.6
6,376,586	+				-0.8
6,376,587	-				-0.1
6,376,587	-				-0.1
6,376,587	-				+0.2
6,376,587	-				+3.1
6,376,587	-				-2.2
6,376,587	-				-1.3
6,376,587	-				-0.6
6,376,587	-				-0.5
6,376,587	-				-1.1
6,376,587	-				+0.2
6,376,587	-				-1.5
6,376,591	+				+1.1
6,376,591	+				-0.7
6,376,591	+				-0.2
6,376,591	+				+0.0
6,376,591	+				-0.4
6,376,591	+				-0.2
6,376,591	+				+0.4
6,376,591	+				-0.6
6,376,592	-				+1.9
6,376,592	-				+1.5
6,376,592	-				+0.6
6,376,592	-				-0.1
6,376,592	-				-0.4
6,376,592	-				+1.0
6,376,592	-				+0.1
6,376,592	-				-1.4
6,376,592	-				-0.1
6,376,617	-				+1.0
6,376,633	+				+0.2
6,376,651	+				-1.0
6,376,651	+				-0.2
6,376,651	+				+0.1
6,376,652	-				-3.6
6,376,728	+		PFLU_RS28655	0.11	-2.5
6,376,728	+		PFLU_RS28655	0.11	-2.3
6,376,728	+		PFLU_RS28655	0.11	+1.1
6,376,728	+		PFLU_RS28655	0.11	-1.1
6,376,728	+		PFLU_RS28655	0.11	-3.1
6,376,728	+		PFLU_RS28655	0.11	-3.3
6,376,728	+		PFLU_RS28655	0.11	-2.1
6,376,728	+		PFLU_RS28655	0.11	-1.9
6,376,729	-		PFLU_RS28655	0.11	-1.8
6,376,729	-		PFLU_RS28655	0.11	-0.1
6,376,729	-		PFLU_RS28655	0.11	-0.9
6,376,732	+		PFLU_RS28655	0.11	-3.6
6,376,732	+		PFLU_RS28655	0.11	-1.1
6,376,732	+		PFLU_RS28655	0.11	-2.9
6,376,732	+		PFLU_RS28655	0.11	+0.5
6,376,732	+		PFLU_RS28655	0.11	-3.2
6,376,732	+		PFLU_RS28655	0.11	-2.8
6,376,732	+		PFLU_RS28655	0.11	-2.5
6,376,732	+		PFLU_RS28655	0.11	-2.7
6,376,732	+		PFLU_RS28655	0.11	-2.5
6,376,732	+		PFLU_RS28655	0.11	-3.5
6,376,732	+		PFLU_RS28655	0.11	-1.1
6,376,732	+		PFLU_RS28655	0.11	-3.2
6,376,733	-		PFLU_RS28655	0.11	-1.9
6,376,733	-		PFLU_RS28655	0.11	-2.0
6,376,733	-		PFLU_RS28655	0.11	-3.3
6,376,733	-		PFLU_RS28655	0.11	-1.6
6,376,733	-		PFLU_RS28655	0.11	-3.9
6,376,733	-		PFLU_RS28655	0.11	-2.9
6,376,733	-		PFLU_RS28655	0.11	-2.1
6,376,733	-		PFLU_RS28655	0.11	-2.5
6,376,733	-		PFLU_RS28655	0.11	-2.9
6,376,733	-		PFLU_RS28655	0.11	-2.4
6,376,733	-		PFLU_RS28655	0.11	-3.1
6,376,733	-		PFLU_RS28655	0.11	-1.6
6,376,733	-		PFLU_RS28655	0.11	+0.1
6,376,733	-		PFLU_RS28655	0.11	-2.2
6,376,733	-		PFLU_RS28655	0.11	-2.2
6,376,733	-		PFLU_RS28655	0.11	-1.6
6,376,733	-		PFLU_RS28655	0.11	-0.7
6,376,764	+		PFLU_RS28655	0.16	-1.6
6,376,764	+		PFLU_RS28655	0.16	-1.2
6,376,764	+		PFLU_RS28655	0.16	-1.3
6,376,764	+		PFLU_RS28655	0.16	-1.9
6,376,765	-		PFLU_RS28655	0.16	-2.5
6,376,765	-		PFLU_RS28655	0.16	-2.4
6,376,788	+		PFLU_RS28655	0.20	-2.1
6,376,789	-		PFLU_RS28655	0.20	-3.8
6,376,797	+		PFLU_RS28655	0.21	-2.4
6,376,797	+		PFLU_RS28655	0.21	-1.8
6,376,797	+		PFLU_RS28655	0.21	-3.7
6,376,797	+		PFLU_RS28655	0.21	-3.0
6,376,797	+		PFLU_RS28655	0.21	-1.4
6,376,798	-		PFLU_RS28655	0.21	-1.2
6,376,798	-		PFLU_RS28655	0.21	-3.3
6,376,798	-		PFLU_RS28655	0.21	-1.8
6,376,896	+		PFLU_RS28655	0.36	-2.9
6,376,896	+		PFLU_RS28655	0.36	-4.0
6,376,896	+		PFLU_RS28655	0.36	-2.0
6,376,896	+		PFLU_RS28655	0.36	-3.0
6,376,896	+		PFLU_RS28655	0.36	-1.9
6,376,896	+		PFLU_RS28655	0.36	-4.1
6,376,896	+		PFLU_RS28655	0.36	+0.7
6,376,896	+		PFLU_RS28655	0.36	-3.8
6,376,896	+		PFLU_RS28655	0.36	-4.0
6,376,896	+		PFLU_RS28655	0.36	-1.8
6,376,896	+		PFLU_RS28655	0.36	-2.7
6,376,896	+		PFLU_RS28655	0.36	-3.1
6,376,896	+		PFLU_RS28655	0.36	-1.4
6,376,897	-		PFLU_RS28655	0.36	-0.2
6,376,897	-		PFLU_RS28655	0.36	-3.4
6,376,897	-		PFLU_RS28655	0.36	-2.3
6,376,897	-		PFLU_RS28655	0.36	-0.2
6,376,897	-		PFLU_RS28655	0.36	-2.3
6,376,897	-		PFLU_RS28655	0.36	-2.8
6,376,897	-		PFLU_RS28655	0.36	-2.3
6,376,897	-		PFLU_RS28655	0.36	-2.1
6,376,897	-		PFLU_RS28655	0.36	-0.5
6,376,897	-		PFLU_RS28655	0.36	-2.0
6,376,897	-		PFLU_RS28655	0.36	-2.6
6,376,897	-		PFLU_RS28655	0.36	-0.2
6,376,897	-		PFLU_RS28655	0.36	-2.3
6,376,897	-		PFLU_RS28655	0.36	+0.1
6,376,897	-		PFLU_RS28655	0.36	-0.9
6,376,898	+		PFLU_RS28655	0.36	-1.5
6,376,898	+		PFLU_RS28655	0.36	-3.4
6,376,898	+		PFLU_RS28655	0.36	-3.9
6,376,898	+		PFLU_RS28655	0.36	-3.4
6,376,898	+		PFLU_RS28655	0.36	-2.3
6,376,898	+		PFLU_RS28655	0.36	-3.2
6,376,898	+		PFLU_RS28655	0.36	-3.1
6,376,898	+		PFLU_RS28655	0.36	-2.9
6,376,898	+		PFLU_RS28655	0.36	-1.7
6,376,899	-		PFLU_RS28655	0.37	-2.8
6,376,899	-		PFLU_RS28655	0.37	-3.2
6,376,899	-		PFLU_RS28655	0.37	-2.5
6,376,899	-		PFLU_RS28655	0.37	-2.9
6,376,899	-		PFLU_RS28655	0.37	-2.8
6,376,899	-		PFLU_RS28655	0.37	-2.8
6,376,899	-		PFLU_RS28655	0.37	-0.2
6,376,899	-		PFLU_RS28655	0.37	-1.1
6,376,899	-		PFLU_RS28655	0.37	-1.6
6,376,899	-		PFLU_RS28655	0.37	-0.2