Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28400

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
6,320,727	+		PFLU_RS28390	0.29	-1.8
6,320,727	+		PFLU_RS28390	0.29	-3.9
6,320,727	+		PFLU_RS28390	0.29	-2.4
6,320,850	+		PFLU_RS28390	0.49	-2.4
6,320,850	+		PFLU_RS28390	0.49	-3.0
6,320,851	-		PFLU_RS28390	0.49	-0.4
6,320,906	+		PFLU_RS28390	0.58	-2.3
6,320,906	+		PFLU_RS28390	0.58	-1.1
6,320,907	-		PFLU_RS28390	0.58	-0.5
6,320,907	-		PFLU_RS28390	0.58	+1.7
6,320,907	-		PFLU_RS28390	0.58	-0.7
6,320,907	-		PFLU_RS28390	0.58	-0.5
6,320,907	-		PFLU_RS28390	0.58	-1.8
6,320,951	+		PFLU_RS28390	0.65	-2.6
6,320,951	+		PFLU_RS28390	0.65	-1.8
6,320,952	-		PFLU_RS28390	0.65	-2.0
6,320,952	-		PFLU_RS28390	0.65	-0.5
6,320,952	-		PFLU_RS28390	0.65	-2.2
6,320,960	+		PFLU_RS28390	0.67	-3.6
6,320,960	+		PFLU_RS28390	0.67	-4.0
6,320,960	+		PFLU_RS28390	0.67	-4.7
6,320,960	+		PFLU_RS28390	0.67	-3.0
6,320,960	+		PFLU_RS28390	0.67	-4.1
6,320,961	-		PFLU_RS28390	0.67	-3.0
6,320,961	-		PFLU_RS28390	0.67	-2.7
6,320,961	-		PFLU_RS28390	0.67	-1.8
6,320,961	-		PFLU_RS28390	0.67	-0.1
6,320,961	-		PFLU_RS28390	0.67	-2.1
6,320,961	-		PFLU_RS28390	0.67	-1.2
6,320,961	-		PFLU_RS28390	0.67	-3.2
6,321,082	+		PFLU_RS28390	0.86	-4.2
6,321,083	-		PFLU_RS28390	0.86	-0.4
6,321,087	+		PFLU_RS28390	0.87	-2.6
6,321,087	+		PFLU_RS28390	0.87	-4.4
6,321,088	-		PFLU_RS28390	0.87	-1.3
6,321,088	-		PFLU_RS28390	0.87	-1.3
6,321,088	-		PFLU_RS28390	0.87	-2.8
6,321,088	-		PFLU_RS28390	0.87	-1.4
6,321,088	-		PFLU_RS28390	0.87	-2.8
6,321,088	-		PFLU_RS28390	0.87	-1.2
6,321,088	-		PFLU_RS28390	0.87	-2.4
6,321,088	-		PFLU_RS28390	0.87	-0.5
6,321,115	+				-2.9
6,321,116	-				-3.8
6,321,119	+				-1.5
6,321,119	+				-3.0
6,321,119	+				-2.2
6,321,119	+				-2.6
6,321,164	+				-1.9
6,321,164	+				+1.5
6,321,165	-				+0.8
6,321,210	+				+1.0
6,321,299	+		PFLU_RS28395	0.26	+1.1
6,321,299	+		PFLU_RS28395	0.26	+2.6
6,321,299	+		PFLU_RS28395	0.26	-0.7
6,321,300	-		PFLU_RS28395	0.26	+1.1
6,321,300	-		PFLU_RS28395	0.26	+1.1
6,321,300	-		PFLU_RS28395	0.26	+1.8
6,321,300	-		PFLU_RS28395	0.26	-0.1
6,321,300	-		PFLU_RS28395	0.26	+0.9
6,321,300	-		PFLU_RS28395	0.26	+1.5
6,321,300	-		PFLU_RS28395	0.26	-0.3
6,321,506	+		PFLU_RS28395	0.73	+0.5
6,321,506	+		PFLU_RS28395	0.73	+1.0
6,321,507	-		PFLU_RS28395	0.73	+1.4
6,321,507	-		PFLU_RS28395	0.73	-0.9
6,321,507	-		PFLU_RS28395	0.73	+1.9
6,321,518	+		PFLU_RS28395	0.76	+0.7
6,321,518	+		PFLU_RS28395	0.76	+0.9
6,321,539	+		PFLU_RS28395	0.81	-0.1
6,321,539	+		PFLU_RS28395	0.81	-0.7
6,321,540	-		PFLU_RS28395	0.81	+2.6
6,321,540	-		PFLU_RS28395	0.81	+1.4
6,321,583	+				+0.9
6,321,583	+				+0.6
6,321,583	+				+1.2
6,321,583	+				-0.2
6,321,584	-				+1.7
6,321,669	+				-2.6
6,321,670	-				+0.8
6,321,801	+		PFLU_RS28400	0.30	+0.1
6,321,801	+		PFLU_RS28400	0.30	+0.9
6,321,875	-		PFLU_RS28400	0.43	+0.5
6,321,875	-		PFLU_RS28400	0.43	-0.4
6,321,875	-		PFLU_RS28400	0.43	+0.4
6,321,887	-		PFLU_RS28400	0.45	-1.4
6,322,116	+		PFLU_RS28400	0.83	+1.3
6,322,117	-		PFLU_RS28400	0.83	+1.9
6,322,302	+				+0.8
6,322,302	+				+0.7
6,322,302	+				+0.4
6,322,302	+				+0.3
6,322,302	+				-0.6
6,322,302	+				+0.0
6,322,302	+				+1.6
6,322,303	-				+1.2
6,322,303	-				+0.6
6,322,303	-				+1.2
6,322,303	-				-0.6
6,322,303	-				+1.1
6,322,303	-				+0.3
6,322,303	-				+0.2
6,322,303	-				+1.1
6,322,303	-				+1.1
6,322,303	-				+0.1
6,322,303	-				+1.1
6,322,303	-				+0.6
6,322,303	-				+0.6
6,322,303	-				+0.6
6,322,304	+				+2.1
6,322,304	+				-0.3
6,322,304	+				+0.5
6,322,305	-				+0.1
6,322,338	+		PFLU_RS28405	0.10	+0.8
6,322,338	+		PFLU_RS28405	0.10	+0.9
6,322,338	+		PFLU_RS28405	0.10	+1.3
6,322,367	+		PFLU_RS28405	0.13	+0.3
6,322,367	+		PFLU_RS28405	0.13	-1.4
6,322,389	+		PFLU_RS28405	0.15	-0.5
6,322,389	+		PFLU_RS28405	0.15	+0.7
6,322,389	+		PFLU_RS28405	0.15	+1.1
6,322,389	+		PFLU_RS28405	0.15	+0.5
6,322,389	+		PFLU_RS28405	0.15	-0.9
6,322,390	-		PFLU_RS28405	0.15	+1.2
6,322,390	-		PFLU_RS28405	0.15	+0.1
6,322,390	-		PFLU_RS28405	0.15	+1.2
6,322,438	-		PFLU_RS28405	0.19	+0.7
6,322,438	-		PFLU_RS28405	0.19	+0.8
6,322,438	-		PFLU_RS28405	0.19	+0.4
6,322,554	-		PFLU_RS28405	0.28	+1.5
6,322,688	+		PFLU_RS28405	0.40	+0.6
6,322,980	+		PFLU_RS28405	0.64	+0.7
6,322,980	+		PFLU_RS28405	0.64	-1.1
6,322,981	-		PFLU_RS28405	0.64	-0.8
6,322,981	-		PFLU_RS28405	0.64	+0.6
6,322,981	-		PFLU_RS28405	0.64	+0.3
6,322,981	-		PFLU_RS28405	0.64	-0.9
6,322,995	+		PFLU_RS28405	0.65	-0.2
6,322,996	-		PFLU_RS28405	0.65	+1.1
6,323,034	+		PFLU_RS28405	0.68	-0.5
6,323,034	+		PFLU_RS28405	0.68	-1.7
6,323,035	-		PFLU_RS28405	0.68	+0.0
6,323,035	-		PFLU_RS28405	0.68	-0.5
6,323,035	-		PFLU_RS28405	0.68	+1.1
6,323,035	-		PFLU_RS28405	0.68	-0.6
6,323,035	-		PFLU_RS28405	0.68	+0.4
6,323,035	-		PFLU_RS28405	0.68	-1.7
6,323,035	-		PFLU_RS28405	0.68	-2.0
6,323,035	-		PFLU_RS28405	0.68	+0.1
6,323,035	-		PFLU_RS28405	0.68	-0.2
6,323,110	+		PFLU_RS28405	0.75	+0.9
6,323,110	+		PFLU_RS28405	0.75	+0.2
6,323,110	+		PFLU_RS28405	0.75	-1.4
6,323,110	+		PFLU_RS28405	0.75	-0.5
6,323,110	+		PFLU_RS28405	0.75	-0.9
6,323,110	+		PFLU_RS28405	0.75	-0.7
6,323,110	+		PFLU_RS28405	0.75	-0.6
6,323,110	+		PFLU_RS28405	0.75	-0.1
6,323,110	+		PFLU_RS28405	0.75	-0.0
6,323,110	+		PFLU_RS28405	0.75	-0.2
6,323,110	+		PFLU_RS28405	0.75	-0.4
6,323,110	+		PFLU_RS28405	0.75	-0.8
6,323,110	+		PFLU_RS28405	0.75	+0.6
6,323,110	+		PFLU_RS28405	0.75	+0.4
6,323,110	+		PFLU_RS28405	0.75	-1.2
6,323,110	+		PFLU_RS28405	0.75	-0.0
6,323,110	+		PFLU_RS28405	0.75	-0.5
6,323,110	+		PFLU_RS28405	0.75	+0.7
6,323,110	+		PFLU_RS28405	0.75	-0.0
6,323,110	+		PFLU_RS28405	0.75	+0.3
6,323,110	+		PFLU_RS28405	0.75	+0.1
6,323,111	-		PFLU_RS28405	0.75	+0.1
6,323,111	-		PFLU_RS28405	0.75	-1.1
6,323,111	-		PFLU_RS28405	0.75	+1.3
6,323,111	-		PFLU_RS28405	0.75	+1.3
6,323,111	-		PFLU_RS28405	0.75	-0.7
6,323,111	-		PFLU_RS28405	0.75	-0.2
6,323,111	-		PFLU_RS28405	0.75	+0.6
6,323,111	-		PFLU_RS28405	0.75	-0.3
6,323,111	-		PFLU_RS28405	0.75	+0.6
6,323,111	-		PFLU_RS28405	0.75	+1.3
6,323,111	-		PFLU_RS28405	0.75	+2.1
6,323,111	-		PFLU_RS28405	0.75	+0.0
6,323,111	-		PFLU_RS28405	0.75	+1.5
6,323,111	-		PFLU_RS28405	0.75	-0.9
6,323,111	-		PFLU_RS28405	0.75	+0.0
6,323,111	-		PFLU_RS28405	0.75	-0.1
6,323,111	-		PFLU_RS28405	0.75	+0.9
6,323,111	-		PFLU_RS28405	0.75	-0.5
6,323,111	-		PFLU_RS28405	0.75	-0.1
6,323,111	-		PFLU_RS28405	0.75	+0.8
6,323,114	+		PFLU_RS28405	0.75	-0.1
6,323,114	+		PFLU_RS28405	0.75	+0.9
6,323,114	+		PFLU_RS28405	0.75	+0.5
6,323,114	+		PFLU_RS28405	0.75	-0.9
6,323,114	+		PFLU_RS28405	0.75	-0.5
6,323,114	+		PFLU_RS28405	0.75	+0.1
6,323,115	-		PFLU_RS28405	0.75	+0.4
6,323,115	-		PFLU_RS28405	0.75	+0.7
6,323,115	-		PFLU_RS28405	0.75	-0.5
6,323,115	-		PFLU_RS28405	0.75	+0.1
6,323,143	-		PFLU_RS28405	0.77	-1.4
6,323,143	-		PFLU_RS28405	0.77	+0.1