Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS27330

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
6,080,472	+				+0.4
6,080,472	+				-0.6
6,080,472	+				+0.4
6,080,473	-				+0.4
6,080,473	-				-0.3
6,080,473	-				+0.1
6,080,710	-		PFLU_RS27325	0.31	-0.2
6,080,710	-		PFLU_RS27325	0.31	+3.0
6,080,755	+		PFLU_RS27325	0.36	-1.4
6,080,755	+		PFLU_RS27325	0.36	+0.0
6,080,756	-		PFLU_RS27325	0.36	-0.8
6,080,756	-		PFLU_RS27325	0.36	+0.0
6,080,756	-		PFLU_RS27325	0.36	-0.5
6,080,756	-		PFLU_RS27325	0.36	+1.3
6,080,756	-		PFLU_RS27325	0.36	+1.2
6,080,995	+		PFLU_RS27325	0.61	+0.3
6,080,995	+		PFLU_RS27325	0.61	+0.0
6,080,996	-		PFLU_RS27325	0.61	-0.1
6,081,046	+		PFLU_RS27325	0.66	+1.3
6,081,046	+		PFLU_RS27325	0.66	+0.3
6,081,046	+		PFLU_RS27325	0.66	+1.1
6,081,046	+		PFLU_RS27325	0.66	+1.3
6,081,046	+		PFLU_RS27325	0.66	-0.0
6,081,046	+		PFLU_RS27325	0.66	-0.1
6,081,046	+		PFLU_RS27325	0.66	+0.7
6,081,047	-		PFLU_RS27325	0.66	-1.0
6,081,047	-		PFLU_RS27325	0.66	+1.3
6,081,047	-		PFLU_RS27325	0.66	+0.2
6,081,047	-		PFLU_RS27325	0.66	-0.5
6,081,048	+		PFLU_RS27325	0.67	+0.5
6,081,048	+		PFLU_RS27325	0.67	+0.3
6,081,048	+		PFLU_RS27325	0.67	-2.2
6,081,048	+		PFLU_RS27325	0.67	-0.8
6,081,049	-		PFLU_RS27325	0.67	+0.9
6,081,123	+		PFLU_RS27325	0.74	+0.8
6,081,123	+		PFLU_RS27325	0.74	+0.5
6,081,242	+		PFLU_RS27325	0.87	+0.2
6,081,242	+		PFLU_RS27325	0.87	-0.1
6,081,242	+		PFLU_RS27325	0.87	+0.2
6,081,242	+		PFLU_RS27325	0.87	-0.6
6,081,243	-		PFLU_RS27325	0.87	+0.5
6,081,243	-		PFLU_RS27325	0.87	-0.3
6,081,243	-		PFLU_RS27325	0.87	+1.1
6,081,243	-		PFLU_RS27325	0.87	+0.4
6,081,243	-		PFLU_RS27325	0.87	-0.2
6,081,282	-				+0.5
6,081,392	+				-0.7
6,081,392	+				-0.6
6,081,393	-				+0.1
6,081,393	-				+0.2
6,081,393	-				-0.0
6,081,393	-				-0.8
6,081,393	-				-0.3
6,081,393	-				-1.7
6,081,418	+				-0.2
6,081,418	+				+1.1
6,081,418	+				-0.1
6,081,418	+				+1.0
6,081,418	+				+0.9
6,081,418	+				-0.7
6,081,419	-				-0.2
6,081,419	-				-0.0
6,081,419	-				-0.2
6,081,419	-				-0.7
6,081,618	+		PFLU_RS27330	0.19	-0.1
6,081,618	+		PFLU_RS27330	0.19	-2.0
6,081,618	+		PFLU_RS27330	0.19	-0.7
6,081,619	-		PFLU_RS27330	0.19	+0.4
6,081,619	-		PFLU_RS27330	0.19	+0.3
6,081,657	-		PFLU_RS27330	0.23	-0.0
6,081,657	-		PFLU_RS27330	0.23	+1.0
6,081,750	+		PFLU_RS27330	0.32	+0.0
6,081,751	-		PFLU_RS27330	0.33	+0.0
6,081,772	+		PFLU_RS27330	0.35	+0.3
6,081,772	+		PFLU_RS27330	0.35	+0.9
6,081,793	-		PFLU_RS27330	0.37	-1.9
6,081,793	-		PFLU_RS27330	0.37	-0.2
6,081,828	-		PFLU_RS27330	0.40	-0.3
6,081,958	+		PFLU_RS27330	0.54	-1.1
6,082,003	+		PFLU_RS27330	0.59	+2.2
6,082,003	+		PFLU_RS27330	0.59	+1.0
6,082,003	+		PFLU_RS27330	0.59	-0.4
6,082,004	-		PFLU_RS27330	0.59	-0.3
6,082,004	-		PFLU_RS27330	0.59	-0.2
6,082,004	-		PFLU_RS27330	0.59	-0.4
6,082,004	-		PFLU_RS27330	0.59	-0.1
6,082,053	+		PFLU_RS27330	0.64	+0.0
6,082,053	+		PFLU_RS27330	0.64	-2.1
6,082,053	+		PFLU_RS27330	0.64	+0.3
6,082,054	-		PFLU_RS27330	0.64	-0.3
6,082,108	+		PFLU_RS27330	0.70	-1.2
6,082,109	-		PFLU_RS27330	0.70	+0.7
6,082,109	-		PFLU_RS27330	0.70	-0.7
6,082,137	+		PFLU_RS27330	0.73	+0.4
6,082,138	-		PFLU_RS27330	0.73	+0.0
6,082,172	-		PFLU_RS27330	0.76	+0.1
6,082,203	-		PFLU_RS27330	0.79	+0.8
6,082,203	-		PFLU_RS27330	0.79	-1.7
6,082,248	+		PFLU_RS27330	0.84	+0.7
6,082,336	+				-1.9
6,082,336	+				+0.4
6,082,337	-				+0.8
6,082,337	-				-0.1
6,082,337	-				-0.0
6,082,381	+				+0.7
6,082,381	+				-0.8
6,082,381	+				-1.0
6,082,382	-				-0.4
6,082,382	-				+0.0
6,082,382	-				-0.1
6,082,382	-				-0.3
6,082,382	-				-1.0
6,082,398	+				-0.0
6,082,398	+				-1.4
6,082,398	+				+0.5
6,082,399	-				+0.6
6,082,736	+		PFLU_RS27335	0.34	+0.1
6,082,736	+		PFLU_RS27335	0.34	+0.3
6,082,917	+		PFLU_RS27335	0.57	-0.5
6,082,917	+		PFLU_RS27335	0.57	-0.0
6,082,917	+		PFLU_RS27335	0.57	+1.2
6,082,917	+		PFLU_RS27335	0.57	+0.0
6,082,917	+		PFLU_RS27335	0.57	+0.9
6,082,917	+		PFLU_RS27335	0.57	+0.2
6,082,917	+		PFLU_RS27335	0.57	+0.6
6,082,917	+		PFLU_RS27335	0.57	-1.6
6,082,917	+		PFLU_RS27335	0.57	+0.9
6,082,917	+		PFLU_RS27335	0.57	+0.3
6,082,917	+		PFLU_RS27335	0.57	+0.3
6,082,917	+		PFLU_RS27335	0.57	-1.7
6,082,917	+		PFLU_RS27335	0.57	-0.4
6,082,917	+		PFLU_RS27335	0.57	-0.4
6,082,917	+		PFLU_RS27335	0.57	+0.0
6,082,918	-		PFLU_RS27335	0.58	-0.3
6,082,918	-		PFLU_RS27335	0.58	+1.1
6,082,918	-		PFLU_RS27335	0.58	-0.9
6,082,918	-		PFLU_RS27335	0.58	+0.9
6,082,918	-		PFLU_RS27335	0.58	+0.4
6,082,920	+		PFLU_RS27335	0.58	+0.2
6,082,921	-		PFLU_RS27335	0.58	+0.1
6,082,921	-		PFLU_RS27335	0.58	+0.6
6,082,921	-		PFLU_RS27335	0.58	+0.9
6,082,921	-		PFLU_RS27335	0.58	-0.4
6,082,935	+		PFLU_RS27335	0.60	-1.4
6,082,935	+		PFLU_RS27335	0.60	-1.2
6,082,935	+		PFLU_RS27335	0.60	-1.4
6,082,935	+		PFLU_RS27335	0.60	-0.1
6,082,935	+		PFLU_RS27335	0.60	+0.5
6,082,935	+		PFLU_RS27335	0.60	-0.1
6,082,936	-		PFLU_RS27335	0.60	+0.8
6,082,936	-		PFLU_RS27335	0.60	+0.1
6,082,936	-		PFLU_RS27335	0.60	-1.6
6,082,936	-		PFLU_RS27335	0.60	+1.0
6,082,936	-		PFLU_RS27335	0.60	-1.4
6,082,936	-		PFLU_RS27335	0.60	+0.9
6,082,936	-		PFLU_RS27335	0.60	-0.5
6,082,939	+		PFLU_RS27335	0.60	+0.1
6,082,939	+		PFLU_RS27335	0.60	-0.3
6,082,939	+		PFLU_RS27335	0.60	+1.1
6,082,939	+		PFLU_RS27335	0.60	+0.2
6,082,939	+		PFLU_RS27335	0.60	-0.4
6,082,940	-		PFLU_RS27335	0.60	+0.6
6,082,940	-		PFLU_RS27335	0.60	+0.3
6,082,940	-		PFLU_RS27335	0.60	-0.5
6,082,940	-		PFLU_RS27335	0.60	+0.5
6,083,106	+		PFLU_RS27335	0.81	-0.1
6,083,106	+		PFLU_RS27335	0.81	-0.4
6,083,106	+		PFLU_RS27335	0.81	+2.6
6,083,106	+		PFLU_RS27335	0.81	+0.0
6,083,107	-		PFLU_RS27335	0.81	-1.5
6,083,107	-		PFLU_RS27335	0.81	+1.5
6,083,107	-		PFLU_RS27335	0.81	+0.5
6,083,107	-		PFLU_RS27335	0.81	+0.5
6,083,107	-		PFLU_RS27335	0.81	+0.3
6,083,238	+				+0.8
6,083,238	+				-0.6
6,083,239	-				-0.2
6,083,239	-				+0.5
6,083,262	+				-1.0
6,083,262	+				+1.0
6,083,263	+				+0.1
6,083,263	-				+0.9
6,083,277	+				-0.9
6,083,277	+				+0.4
6,083,277	+				+0.1
6,083,277	+				-0.4
6,083,277	+				-1.4
6,083,277	+				+1.0
6,083,278	-				-0.3
6,083,278	-				+0.6
6,083,278	-				+1.0
6,083,283	+				-1.2
6,083,283	+				+0.6
6,083,283	+				+0.5
6,083,284	-				+1.3
6,083,284	-				-0.3
6,083,284	-				-2.3
6,083,284	-				+0.7
6,083,284	-				+1.0
6,083,284	-				-0.4
6,083,304	+				-0.1
6,083,305	-				-0.7
6,083,336	+		PFLU_RS27340	0.11	-0.1
6,083,336	+		PFLU_RS27340	0.11	-0.2
6,083,349	+		PFLU_RS27340	0.15	+0.1
6,083,349	+		PFLU_RS27340	0.15	+0.1
6,083,349	+		PFLU_RS27340	0.15	+0.6
6,083,349	+		PFLU_RS27340	0.15	+0.1
6,083,349	+		PFLU_RS27340	0.15	+1.0
6,083,350	-		PFLU_RS27340	0.15	+1.0
6,083,350	-		PFLU_RS27340	0.15	+0.7
6,083,350	-		PFLU_RS27340	0.15	-0.7
6,083,350	-		PFLU_RS27340	0.15	+0.2
6,083,353	+		PFLU_RS27340	0.16	+0.7
6,083,353	+		PFLU_RS27340	0.16	+1.0
6,083,353	+		PFLU_RS27340	0.16	+1.0
6,083,353	+		PFLU_RS27340	0.16	-0.3
6,083,354	-		PFLU_RS27340	0.16	+0.8