Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25670 and PFLU_RS25675 are separated by 92 nucleotides PFLU_RS25675 and PFLU_RS25680 are separated by 189 nucleotides PFLU_RS25680 and PFLU_RS25685 are separated by 274 nucleotides
PFLU_RS25670: PFLU_RS25670 - bifunctional aminoglycoside phosphotransferase/ATP-binding protein, at 5,732,745 to 5,734,301
_RS25670
PFLU_RS25675: PFLU_RS25675 - pentapeptide repeat-containing protein, at 5,734,394 to 5,734,738
_RS25675
PFLU_RS25680: PFLU_RS25680 - TfoX/Sxy family protein, at 5,734,928 to 5,735,200
_RS25680
PFLU_RS25685: PFLU_RS25685 - heme ABC transporter ATP-binding protein, at 5,735,475 to 5,736,242
_RS25685
Position (kb) 5734
5735
5736 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5733.936 kb on + strand, within PFLU_RS25670 at 5733.936 kb on + strand, within PFLU_RS25670 at 5733.936 kb on + strand, within PFLU_RS25670 at 5733.937 kb on - strand, within PFLU_RS25670 at 5733.937 kb on - strand, within PFLU_RS25670 at 5733.967 kb on + strand, within PFLU_RS25670 at 5734.043 kb on - strand, within PFLU_RS25670 at 5734.251 kb on - strand at 5734.251 kb on - strand at 5734.274 kb on + strand at 5734.275 kb on - strand at 5734.275 kb on - strand at 5734.299 kb on + strand at 5734.300 kb on - strand at 5734.300 kb on - strand at 5734.300 kb on - strand at 5734.326 kb on + strand at 5734.326 kb on + strand at 5734.327 kb on - strand at 5734.349 kb on + strand at 5734.359 kb on - strand at 5734.417 kb on + strand at 5734.417 kb on + strand at 5734.418 kb on - strand at 5734.418 kb on - strand at 5734.428 kb on - strand at 5734.441 kb on + strand, within PFLU_RS25675 at 5734.441 kb on + strand, within PFLU_RS25675 at 5734.442 kb on - strand, within PFLU_RS25675 at 5734.442 kb on - strand, within PFLU_RS25675 at 5734.568 kb on + strand, within PFLU_RS25675 at 5734.568 kb on + strand, within PFLU_RS25675 at 5734.568 kb on + strand, within PFLU_RS25675 at 5734.568 kb on + strand, within PFLU_RS25675 at 5734.568 kb on + strand, within PFLU_RS25675 at 5734.569 kb on - strand, within PFLU_RS25675 at 5734.569 kb on - strand, within PFLU_RS25675 at 5734.569 kb on - strand, within PFLU_RS25675 at 5734.569 kb on - strand, within PFLU_RS25675 at 5734.569 kb on - strand, within PFLU_RS25675 at 5734.569 kb on - strand, within PFLU_RS25675 at 5734.587 kb on + strand, within PFLU_RS25675 at 5734.587 kb on + strand, within PFLU_RS25675 at 5734.588 kb on - strand, within PFLU_RS25675 at 5734.658 kb on + strand, within PFLU_RS25675 at 5734.658 kb on + strand, within PFLU_RS25675 at 5734.658 kb on + strand, within PFLU_RS25675 at 5734.659 kb on - strand, within PFLU_RS25675 at 5734.659 kb on - strand, within PFLU_RS25675 at 5734.659 kb on - strand, within PFLU_RS25675 at 5734.659 kb on - strand, within PFLU_RS25675 at 5734.659 kb on - strand, within PFLU_RS25675 at 5734.659 kb on - strand, within PFLU_RS25675 at 5734.659 kb on - strand, within PFLU_RS25675 at 5734.659 kb on - strand, within PFLU_RS25675 at 5734.659 kb on - strand, within PFLU_RS25675 at 5734.737 kb on - strand at 5734.739 kb on + strand at 5734.739 kb on + strand at 5734.739 kb on + strand at 5734.740 kb on - strand at 5734.740 kb on - strand at 5734.740 kb on - strand at 5734.817 kb on + strand at 5734.817 kb on + strand at 5734.840 kb on + strand at 5734.840 kb on + strand at 5734.841 kb on - strand at 5734.841 kb on - strand at 5734.841 kb on - strand at 5734.861 kb on + strand at 5734.861 kb on + strand at 5735.090 kb on + strand, within PFLU_RS25680 at 5735.090 kb on + strand, within PFLU_RS25680 at 5735.090 kb on + strand, within PFLU_RS25680 at 5735.090 kb on + strand, within PFLU_RS25680 at 5735.090 kb on + strand, within PFLU_RS25680 at 5735.090 kb on + strand, within PFLU_RS25680 at 5735.091 kb on - strand, within PFLU_RS25680 at 5735.091 kb on - strand, within PFLU_RS25680 at 5735.091 kb on - strand, within PFLU_RS25680 at 5735.091 kb on - strand, within PFLU_RS25680 at 5735.091 kb on - strand, within PFLU_RS25680 at 5735.091 kb on - strand, within PFLU_RS25680 at 5735.091 kb on - strand, within PFLU_RS25680 at 5735.199 kb on - strand at 5735.223 kb on + strand at 5735.223 kb on + strand at 5735.223 kb on + strand at 5735.224 kb on - strand at 5735.224 kb on - strand at 5735.224 kb on - strand at 5735.224 kb on - strand at 5735.308 kb on - strand at 5735.368 kb on + strand at 5735.368 kb on + strand at 5735.369 kb on - strand at 5735.369 kb on - strand at 5735.369 kb on - strand at 5735.369 kb on - strand at 5735.385 kb on - strand at 5735.402 kb on - strand at 5735.402 kb on - strand at 5735.438 kb on + strand at 5735.439 kb on - strand at 5735.452 kb on + strand at 5735.632 kb on + strand, within PFLU_RS25685 at 5735.632 kb on + strand, within PFLU_RS25685 at 5735.790 kb on + strand, within PFLU_RS25685 at 5735.791 kb on - strand, within PFLU_RS25685 at 5735.791 kb on - strand, within PFLU_RS25685 at 5735.791 kb on - strand, within PFLU_RS25685 at 5735.851 kb on + strand, within PFLU_RS25685 at 5735.851 kb on + strand, within PFLU_RS25685 at 5735.852 kb on - strand, within PFLU_RS25685 at 5735.852 kb on - strand, within PFLU_RS25685 at 5735.852 kb on - strand, within PFLU_RS25685 at 5735.889 kb on + strand, within PFLU_RS25685 at 5735.889 kb on + strand, within PFLU_RS25685 at 5735.889 kb on + strand, within PFLU_RS25685 at 5735.890 kb on - strand, within PFLU_RS25685 at 5736.119 kb on + strand, within PFLU_RS25685 at 5736.119 kb on + strand, within PFLU_RS25685 at 5736.119 kb on + strand, within PFLU_RS25685 at 5736.119 kb on + strand, within PFLU_RS25685 at 5736.119 kb on + strand, within PFLU_RS25685 at 5736.119 kb on + strand, within PFLU_RS25685 at 5736.119 kb on + strand, within PFLU_RS25685 at 5736.119 kb on + strand, within PFLU_RS25685 at 5736.120 kb on - strand, within PFLU_RS25685 at 5736.120 kb on - strand, within PFLU_RS25685 at 5736.120 kb on - strand, within PFLU_RS25685 at 5736.120 kb on - strand, within PFLU_RS25685 at 5736.120 kb on - strand, within PFLU_RS25685 at 5736.195 kb on + strand at 5736.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 5,733,936 + PFLU_RS25670 0.76 -0.6 5,733,936 + PFLU_RS25670 0.76 +1.4 5,733,936 + PFLU_RS25670 0.76 +0.4 5,733,937 - PFLU_RS25670 0.77 -1.8 5,733,937 - PFLU_RS25670 0.77 -2.4 5,733,967 + PFLU_RS25670 0.78 +0.6 5,734,043 - PFLU_RS25670 0.83 -0.8 5,734,251 - -1.3 5,734,251 - -1.1 5,734,274 + +0.2 5,734,275 - +0.8 5,734,275 - +0.3 5,734,299 + -0.6 5,734,300 - +0.2 5,734,300 - -1.9 5,734,300 - -0.9 5,734,326 + -0.4 5,734,326 + +0.0 5,734,327 - -0.8 5,734,349 + -1.0 5,734,359 - -1.6 5,734,417 + +0.0 5,734,417 + -0.8 5,734,418 - -0.8 5,734,418 - +1.2 5,734,428 - -0.5 5,734,441 + PFLU_RS25675 0.14 -1.1 5,734,441 + PFLU_RS25675 0.14 +0.1 5,734,442 - PFLU_RS25675 0.14 +0.5 5,734,442 - PFLU_RS25675 0.14 -1.1 5,734,568 + PFLU_RS25675 0.50 +1.5 5,734,568 + PFLU_RS25675 0.50 -2.6 5,734,568 + PFLU_RS25675 0.50 -2.4 5,734,568 + PFLU_RS25675 0.50 -1.6 5,734,568 + PFLU_RS25675 0.50 -2.2 5,734,569 - PFLU_RS25675 0.51 +0.1 5,734,569 - PFLU_RS25675 0.51 -1.6 5,734,569 - PFLU_RS25675 0.51 -1.2 5,734,569 - PFLU_RS25675 0.51 +0.0 5,734,569 - PFLU_RS25675 0.51 -1.7 5,734,569 - PFLU_RS25675 0.51 -0.3 5,734,587 + PFLU_RS25675 0.56 +0.1 5,734,587 + PFLU_RS25675 0.56 -0.0 5,734,588 - PFLU_RS25675 0.56 +0.0 5,734,658 + PFLU_RS25675 0.77 -0.4 5,734,658 + PFLU_RS25675 0.77 -0.2 5,734,658 + PFLU_RS25675 0.77 -1.1 5,734,659 - PFLU_RS25675 0.77 +0.6 5,734,659 - PFLU_RS25675 0.77 -0.9 5,734,659 - PFLU_RS25675 0.77 -2.1 5,734,659 - PFLU_RS25675 0.77 -1.2 5,734,659 - PFLU_RS25675 0.77 -1.0 5,734,659 - PFLU_RS25675 0.77 -0.9 5,734,659 - PFLU_RS25675 0.77 +0.1 5,734,659 - PFLU_RS25675 0.77 +0.2 5,734,659 - PFLU_RS25675 0.77 -0.2 5,734,737 - +0.4 5,734,739 + -0.7 5,734,739 + -0.1 5,734,739 + -0.2 5,734,740 - -0.4 5,734,740 - +0.1 5,734,740 - +1.2 5,734,817 + -0.9 5,734,817 + +1.6 5,734,840 + +0.7 5,734,840 + +0.8 5,734,841 - +0.8 5,734,841 - -0.6 5,734,841 - -0.2 5,734,861 + +0.2 5,734,861 + +0.1 5,735,090 + PFLU_RS25680 0.59 +1.4 5,735,090 + PFLU_RS25680 0.59 +0.2 5,735,090 + PFLU_RS25680 0.59 +0.2 5,735,090 + PFLU_RS25680 0.59 +1.3 5,735,090 + PFLU_RS25680 0.59 +1.2 5,735,090 + PFLU_RS25680 0.59 -0.2 5,735,091 - PFLU_RS25680 0.60 +1.2 5,735,091 - PFLU_RS25680 0.60 -0.1 5,735,091 - PFLU_RS25680 0.60 +0.5 5,735,091 - PFLU_RS25680 0.60 +1.6 5,735,091 - PFLU_RS25680 0.60 +1.9 5,735,091 - PFLU_RS25680 0.60 -1.8 5,735,091 - PFLU_RS25680 0.60 +0.1 5,735,199 - +0.4 5,735,223 + -0.1 5,735,223 + +1.2 5,735,223 + +0.3 5,735,224 - -0.6 5,735,224 - +0.6 5,735,224 - -0.8 5,735,224 - +1.2 5,735,308 - +0.2 5,735,368 + -1.0 5,735,368 + -0.6 5,735,369 - -1.2 5,735,369 - +0.1 5,735,369 - +0.8 5,735,369 - +0.6 5,735,385 - +0.7 5,735,402 - -0.1 5,735,402 - -0.7 5,735,438 + -0.8 5,735,439 - -0.4 5,735,452 + +0.4 5,735,632 + PFLU_RS25685 0.20 -0.7 5,735,632 + PFLU_RS25685 0.20 +0.1 5,735,790 + PFLU_RS25685 0.41 -0.3 5,735,791 - PFLU_RS25685 0.41 +0.4 5,735,791 - PFLU_RS25685 0.41 -0.0 5,735,791 - PFLU_RS25685 0.41 +0.6 5,735,851 + PFLU_RS25685 0.49 +2.5 5,735,851 + PFLU_RS25685 0.49 -0.5 5,735,852 - PFLU_RS25685 0.49 -0.5 5,735,852 - PFLU_RS25685 0.49 -1.6 5,735,852 - PFLU_RS25685 0.49 -1.0 5,735,889 + PFLU_RS25685 0.54 +0.2 5,735,889 + PFLU_RS25685 0.54 -0.9 5,735,889 + PFLU_RS25685 0.54 +0.9 5,735,890 - PFLU_RS25685 0.54 +0.1 5,736,119 + PFLU_RS25685 0.84 +1.6 5,736,119 + PFLU_RS25685 0.84 +2.1 5,736,119 + PFLU_RS25685 0.84 +0.2 5,736,119 + PFLU_RS25685 0.84 -0.5 5,736,119 + PFLU_RS25685 0.84 +0.6 5,736,119 + PFLU_RS25685 0.84 +0.0 5,736,119 + PFLU_RS25685 0.84 +1.3 5,736,119 + PFLU_RS25685 0.84 +0.5 5,736,120 - PFLU_RS25685 0.84 +0.4 5,736,120 - PFLU_RS25685 0.84 +0.6 5,736,120 - PFLU_RS25685 0.84 +1.0 5,736,120 - PFLU_RS25685 0.84 +0.9 5,736,120 - PFLU_RS25685 0.84 +1.3 5,736,195 + +0.1 5,736,196 - -0.2
Or see this region's nucleotide sequence