Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS24210

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
5,419,232	-				-1.1
5,419,245	+				-0.2
5,419,277	-				+1.0
5,419,277	-				-0.5
5,419,285	-				-0.2
5,419,292	+				-0.2
5,419,292	+				-0.6
5,419,301	+				+1.2
5,419,301	+				-0.1
5,419,302	-				-0.5
5,419,302	-				+0.1
5,419,303	+				-0.0
5,419,303	+				-0.5
5,419,303	+				-1.6
5,419,304	-				+0.0
5,419,312	-				-0.7
5,419,325	-				-0.4
5,419,359	+				+0.0
5,419,375	+				-1.4
5,419,375	+				+0.2
5,419,375	+				-0.5
5,419,375	+				-1.5
5,419,375	+				+0.0
5,419,375	+				+0.5
5,419,376	-				+1.5
5,419,392	+				-1.0
5,419,392	+				-0.8
5,419,401	+				-0.1
5,419,402	-				-0.0
5,419,417	-				+0.5
5,419,437	+				-1.0
5,419,445	+				+0.5
5,419,502	-				+1.7
5,419,502	-				+0.5
5,419,502	-				+0.5
5,419,502	-				-0.6
5,419,505	+				-2.1
5,419,505	+				+0.3
5,419,506	-				+1.1
5,419,506	-				-0.3
5,419,506	-				+1.7
5,419,506	-				+1.3
5,419,510	+				+0.6
5,419,511	-				-2.3
5,419,511	-				-0.6
5,419,536	+				+2.0
5,419,556	+		PFLU_RS24205	0.10	-0.2
5,419,557	-		PFLU_RS24205	0.10	-0.3
5,419,557	-		PFLU_RS24205	0.10	-1.5
5,419,557	-		PFLU_RS24205	0.10	-1.1
5,419,656	+		PFLU_RS24205	0.37	+0.1
5,419,656	+		PFLU_RS24205	0.37	+1.0
5,419,656	+		PFLU_RS24205	0.37	-1.4
5,419,657	-		PFLU_RS24205	0.37	+0.7
5,419,771	-		PFLU_RS24205	0.67	+0.1
5,419,986	-				-1.5
5,420,019	-				-1.6
5,420,019	-				+0.3
5,420,019	-				-1.3
5,420,091	+				+0.7
5,420,200	-		PFLU_RS24210	0.15	+0.1
5,420,200	-		PFLU_RS24210	0.15	+0.4
5,420,200	-		PFLU_RS24210	0.15	-0.2
5,420,267	-		PFLU_RS24210	0.20	+1.0
5,420,302	+		PFLU_RS24210	0.22	+0.8
5,420,302	+		PFLU_RS24210	0.22	+0.4
5,420,303	-		PFLU_RS24210	0.22	+1.5
5,420,336	+		PFLU_RS24210	0.25	+0.5
5,420,336	+		PFLU_RS24210	0.25	-1.0
5,420,336	+		PFLU_RS24210	0.25	-3.2
5,420,337	-		PFLU_RS24210	0.25	+1.4
5,420,429	-		PFLU_RS24210	0.31	+0.6
5,420,454	+		PFLU_RS24210	0.33	+0.6
5,420,455	-		PFLU_RS24210	0.33	+0.0
5,420,455	-		PFLU_RS24210	0.33	-0.4
5,420,455	-		PFLU_RS24210	0.33	-0.5
5,420,455	-		PFLU_RS24210	0.33	+1.3
5,420,455	-		PFLU_RS24210	0.33	-0.6
5,420,455	-		PFLU_RS24210	0.33	+0.4
5,420,455	-		PFLU_RS24210	0.33	+0.1
5,420,532	+		PFLU_RS24210	0.38	+0.7
5,420,532	+		PFLU_RS24210	0.38	+0.2
5,420,532	+		PFLU_RS24210	0.38	-2.6
5,420,533	-		PFLU_RS24210	0.38	-0.4
5,420,533	-		PFLU_RS24210	0.38	+0.8
5,420,589	+		PFLU_RS24210	0.42	-2.0
5,420,590	-		PFLU_RS24210	0.42	+0.1
5,420,590	-		PFLU_RS24210	0.42	-0.7
5,420,590	-		PFLU_RS24210	0.42	-0.6
5,420,591	+		PFLU_RS24210	0.43	-1.3
5,420,591	+		PFLU_RS24210	0.43	-0.3
5,420,591	+		PFLU_RS24210	0.43	+1.3
5,420,591	+		PFLU_RS24210	0.43	-0.4
5,420,592	-		PFLU_RS24210	0.43	+0.3
5,420,718	-		PFLU_RS24210	0.51	+0.0
5,420,718	-		PFLU_RS24210	0.51	-0.2
5,420,813	-		PFLU_RS24210	0.58	+1.2
5,420,813	-		PFLU_RS24210	0.58	+0.5
5,420,813	-		PFLU_RS24210	0.58	-1.6
5,420,822	+		PFLU_RS24210	0.59	-0.2
5,420,822	+		PFLU_RS24210	0.59	-0.6
5,420,822	+		PFLU_RS24210	0.59	-0.0
5,420,823	-		PFLU_RS24210	0.59	-0.1
5,420,823	-		PFLU_RS24210	0.59	-0.5
5,420,823	-		PFLU_RS24210	0.59	-2.1
5,420,823	-		PFLU_RS24210	0.59	-1.3
5,421,000	-		PFLU_RS24210	0.71	+0.7
5,421,000	-		PFLU_RS24210	0.71	+0.9
5,421,063	-		PFLU_RS24210	0.76	+1.0
5,421,093	-		PFLU_RS24210	0.78	+0.5
5,421,128	+		PFLU_RS24210	0.80	-2.0
5,421,129	-		PFLU_RS24210	0.80	-0.6
5,421,129	-		PFLU_RS24210	0.80	+1.3
5,421,424	+				+0.6
5,421,444	+				-0.1
5,421,444	+				-1.6
5,421,444	+				+0.1
5,421,485	+				-0.0
5,421,485	+				+0.6
5,421,535	+				-0.8
5,421,535	+				-0.8
5,421,536	-				+4.3
5,421,536	-				+0.2
5,421,536	-				+0.3
5,421,536	-				-0.2
5,421,798	+		PFLU_RS24215	0.32	+2.2
5,421,798	+		PFLU_RS24215	0.32	+0.4
5,421,798	+		PFLU_RS24215	0.32	+0.3
5,421,798	+		PFLU_RS24215	0.32	-0.4
5,421,798	+		PFLU_RS24215	0.32	+2.3
5,421,798	+		PFLU_RS24215	0.32	-0.1
5,421,798	+		PFLU_RS24215	0.32	+0.1
5,421,798	+		PFLU_RS24215	0.32	+0.1
5,421,798	+		PFLU_RS24215	0.32	-0.9
5,421,798	+		PFLU_RS24215	0.32	+0.3
5,421,799	-		PFLU_RS24215	0.32	+0.7
5,421,799	-		PFLU_RS24215	0.32	-2.6
5,421,799	-		PFLU_RS24215	0.32	-0.1
5,421,799	-		PFLU_RS24215	0.32	-0.3
5,421,799	-		PFLU_RS24215	0.32	+0.2
5,421,799	-		PFLU_RS24215	0.32	-0.7
5,421,799	-		PFLU_RS24215	0.32	-1.2
5,421,799	-		PFLU_RS24215	0.32	+0.2
5,421,799	-		PFLU_RS24215	0.32	+0.5
5,421,799	-		PFLU_RS24215	0.32	-2.2
5,421,799	-		PFLU_RS24215	0.32	-0.1
5,421,821	+		PFLU_RS24215	0.35	-0.4
5,421,822	-		PFLU_RS24215	0.35	-0.8
5,421,859	+		PFLU_RS24215	0.40	+0.4
5,421,860	-		PFLU_RS24215	0.41	+0.9
5,421,860	-		PFLU_RS24215	0.41	-0.6
5,421,860	-		PFLU_RS24215	0.41	-0.4
5,421,868	+		PFLU_RS24215	0.42	+2.9
5,421,869	-		PFLU_RS24215	0.42	+0.0
5,421,869	-		PFLU_RS24215	0.42	-2.5
5,421,869	-		PFLU_RS24215	0.42	-0.2
5,421,869	-		PFLU_RS24215	0.42	-0.3
5,421,869	-		PFLU_RS24215	0.42	-0.0
5,421,869	-		PFLU_RS24215	0.42	-1.2
5,421,890	+		PFLU_RS24215	0.45	+0.5
5,421,890	+		PFLU_RS24215	0.45	-0.6
5,421,891	-		PFLU_RS24215	0.45	+0.5
5,421,891	-		PFLU_RS24215	0.45	-1.3
5,421,951	+		PFLU_RS24215	0.54	+0.5
5,422,064	-		PFLU_RS24215	0.70	+0.8
5,422,064	-		PFLU_RS24215	0.70	-0.7
5,422,064	-		PFLU_RS24215	0.70	+0.7
5,422,207	+				-0.3
5,422,208	-				+0.2
5,422,225	+				+0.6
5,422,348	+				-0.3
5,422,348	+				-0.2
5,422,349	-				+0.5
5,422,349	-				+0.2
5,422,349	-				-1.5
5,422,388	+		PFLU_RS24220	0.12	+0.1