Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23685

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
5,308,125	+		PFLU_RS23680	0.70	-1.0
5,308,125	+		PFLU_RS23680	0.70	-3.7
5,308,125	+		PFLU_RS23680	0.70	-5.1
5,308,125	+		PFLU_RS23680	0.70	-2.1
5,308,125	+		PFLU_RS23680	0.70	-1.9
5,308,125	+		PFLU_RS23680	0.70	-3.4
5,308,126	-		PFLU_RS23680	0.70	-3.2
5,308,126	-		PFLU_RS23680	0.70	-2.1
5,308,126	-		PFLU_RS23680	0.70	-1.7
5,308,126	-		PFLU_RS23680	0.70	-2.0
5,308,126	-		PFLU_RS23680	0.70	-2.7
5,308,126	-		PFLU_RS23680	0.70	-2.6
5,308,126	-		PFLU_RS23680	0.70	-2.2
5,308,126	-		PFLU_RS23680	0.70	-3.2
5,308,126	-		PFLU_RS23680	0.70	-1.9
5,308,126	-		PFLU_RS23680	0.70	-2.5
5,308,311	+		PFLU_RS23680	0.81	-1.6
5,308,312	-		PFLU_RS23680	0.81	-1.8
5,308,312	-		PFLU_RS23680	0.81	-3.2
5,308,312	-		PFLU_RS23680	0.81	-4.1
5,308,312	-		PFLU_RS23680	0.81	-2.7
5,308,429	+		PFLU_RS23680	0.88	-2.8
5,308,429	+		PFLU_RS23680	0.88	-2.0
5,308,429	+		PFLU_RS23680	0.88	-3.6
5,308,430	-		PFLU_RS23680	0.88	-2.9
5,308,430	-		PFLU_RS23680	0.88	-1.6
5,308,430	-		PFLU_RS23680	0.88	-3.6
5,308,444	-		PFLU_RS23680	0.89	-1.5
5,308,444	-		PFLU_RS23680	0.89	-1.5
5,308,444	-		PFLU_RS23680	0.89	-1.3
5,308,470	+				-1.0
5,308,470	+				-2.3
5,308,470	+				-1.4
5,308,470	+				-2.4
5,308,470	+				-1.6
5,308,471	-				-1.9
5,308,471	-				-3.1
5,308,482	+				-2.2
5,308,482	+				-3.5
5,308,482	+				-3.6
5,308,483	-				-2.1
5,308,483	-				-3.5
5,308,483	-				-3.9
5,308,561	+				-3.0
5,308,608	+				-2.2
5,308,608	+				-3.6
5,308,608	+				-2.8
5,308,609	-				+0.0
5,308,609	-				-2.1
5,308,609	-				-3.1
5,308,612	+				-3.5
5,308,612	+				-3.3
5,308,612	+				-2.7
5,308,612	+				-2.7
5,308,612	+				-2.6
5,308,612	+				-0.3
5,308,612	+				-4.6
5,308,612	+				-3.4
5,308,612	+				-0.8
5,308,612	+				-3.0
5,308,612	+				-3.6
5,308,612	+				-1.7
5,308,612	+				-3.1
5,308,613	-				-2.0
5,308,613	-				-1.6
5,308,613	-				-2.1
5,308,695	+				-0.9
5,308,695	+				-2.4
5,308,695	+				-0.3
5,308,696	-				+0.1
5,308,696	-				+1.1
5,308,698	+				-1.1
5,308,706	+				-1.8
5,308,707	-				+0.2
5,308,707	-				+0.5
5,308,707	-				+1.0
5,308,707	-				-0.0
5,308,707	-				+0.6
5,308,716	+				-2.6
5,308,770	+				-1.0
5,308,770	+				-1.6
5,308,836	-				-0.6
5,308,840	+				-0.8
5,308,841	-				+0.3
5,308,879	-				-0.0
5,308,915	+				+0.8
5,308,916	-				+1.0
5,308,947	+				-0.2
5,308,947	+				+0.6
5,308,948	-				-0.4
5,308,960	+				+0.5
5,308,960	+				-2.5
5,308,960	+				+0.6
5,308,961	-				-0.8
5,309,105	+				+0.4
5,309,105	+				+0.4
5,309,105	+				+1.0
5,309,105	+				-0.8
5,309,105	+				+0.7
5,309,105	+				-0.4
5,309,105	+				-0.8
5,309,105	+				+0.4
5,309,105	+				+0.1
5,309,105	+				-0.6
5,309,105	+				+0.4
5,309,105	+				+0.2
5,309,105	+				+1.1
5,309,105	+				+2.2
5,309,105	+				-0.7
5,309,105	+				+0.5
5,309,105	+				+1.1
5,309,105	+				-1.6
5,309,105	+				+0.2
5,309,105	+				-0.7
5,309,105	+				+0.5
5,309,106	-				+0.3
5,309,106	-				-0.1
5,309,106	-				-0.4
5,309,106	-				-1.2
5,309,106	-				-0.5
5,309,106	-				+1.0
5,309,106	-				-0.3
5,309,106	-				-0.7
5,309,122	+				+0.5
5,309,123	-				-1.1
5,309,123	-				-0.7
5,309,123	-				-0.2
5,309,123	-				+0.7
5,309,146	+				-0.1
5,309,146	+				-0.2
5,309,297	-		PFLU_RS23685	0.16	+1.2
5,309,297	-		PFLU_RS23685	0.16	+0.4
5,309,444	-		PFLU_RS23685	0.24	-0.1
5,309,444	-		PFLU_RS23685	0.24	-0.6
5,309,585	-		PFLU_RS23685	0.33	-0.5
5,309,810	+		PFLU_RS23685	0.46	-0.4
5,309,810	+		PFLU_RS23685	0.46	-0.8
5,309,811	-		PFLU_RS23685	0.46	-2.0
5,309,908	+		PFLU_RS23685	0.52	+0.9
5,309,908	+		PFLU_RS23685	0.52	-1.2
5,309,908	+		PFLU_RS23685	0.52	+0.6
5,309,908	+		PFLU_RS23685	0.52	+1.5
5,309,908	+		PFLU_RS23685	0.52	-0.7
5,309,908	+		PFLU_RS23685	0.52	+0.1
5,309,908	+		PFLU_RS23685	0.52	+1.3
5,309,908	+		PFLU_RS23685	0.52	+1.2
5,309,908	+		PFLU_RS23685	0.52	-0.9
5,309,908	+		PFLU_RS23685	0.52	+1.2
5,309,908	+		PFLU_RS23685	0.52	+0.9
5,309,908	+		PFLU_RS23685	0.52	+0.0
5,309,908	+		PFLU_RS23685	0.52	-0.3
5,309,908	+		PFLU_RS23685	0.52	+0.3
5,309,908	+		PFLU_RS23685	0.52	+0.2
5,309,908	+		PFLU_RS23685	0.52	+0.6
5,309,908	+		PFLU_RS23685	0.52	+1.1
5,309,908	+		PFLU_RS23685	0.52	-1.4
5,309,908	+		PFLU_RS23685	0.52	+0.1
5,309,908	+		PFLU_RS23685	0.52	-0.4
5,309,908	+		PFLU_RS23685	0.52	+2.1
5,309,908	+		PFLU_RS23685	0.52	+0.8
5,309,908	+		PFLU_RS23685	0.52	-1.1
5,309,908	+		PFLU_RS23685	0.52	-0.8
5,309,908	+		PFLU_RS23685	0.52	-1.0
5,309,908	+		PFLU_RS23685	0.52	+1.1
5,309,908	+		PFLU_RS23685	0.52	+0.2
5,309,908	+		PFLU_RS23685	0.52	+0.3
5,309,908	+		PFLU_RS23685	0.52	+0.2
5,309,908	+		PFLU_RS23685	0.52	-0.8
5,309,908	+		PFLU_RS23685	0.52	+0.5
5,309,908	+		PFLU_RS23685	0.52	+0.7
5,309,909	-		PFLU_RS23685	0.52	+0.3
5,309,909	-		PFLU_RS23685	0.52	-0.9
5,309,909	-		PFLU_RS23685	0.52	+0.9
5,309,909	-		PFLU_RS23685	0.52	+1.4
5,309,909	-		PFLU_RS23685	0.52	-1.0
5,309,909	-		PFLU_RS23685	0.52	+0.3
5,309,909	-		PFLU_RS23685	0.52	+0.9
5,309,909	-		PFLU_RS23685	0.52	+0.9
5,309,909	-		PFLU_RS23685	0.52	-0.4
5,309,909	-		PFLU_RS23685	0.52	+0.8
5,309,909	-		PFLU_RS23685	0.52	-0.2
5,309,909	-		PFLU_RS23685	0.52	-1.0
5,309,909	-		PFLU_RS23685	0.52	+1.8
5,309,909	-		PFLU_RS23685	0.52	-0.8
5,309,909	-		PFLU_RS23685	0.52	+0.7
5,309,909	-		PFLU_RS23685	0.52	-0.1
5,309,909	-		PFLU_RS23685	0.52	-0.9
5,309,909	-		PFLU_RS23685	0.52	+0.2
5,309,909	-		PFLU_RS23685	0.52	+0.0
5,309,909	-		PFLU_RS23685	0.52	-1.0
5,309,909	-		PFLU_RS23685	0.52	+0.4
5,309,909	-		PFLU_RS23685	0.52	+0.9
5,309,909	-		PFLU_RS23685	0.52	+0.8
5,309,918	-		PFLU_RS23685	0.53	-0.1
5,310,079	+		PFLU_RS23685	0.62	-2.5
5,310,079	+		PFLU_RS23685	0.62	+0.7
5,310,079	+		PFLU_RS23685	0.62	+0.7
5,310,079	+		PFLU_RS23685	0.62	+0.6
5,310,079	+		PFLU_RS23685	0.62	+1.2
5,310,080	-		PFLU_RS23685	0.62	-0.1
5,310,080	-		PFLU_RS23685	0.62	+0.9
5,310,080	-		PFLU_RS23685	0.62	-0.1
5,310,080	-		PFLU_RS23685	0.62	+0.9
5,310,184	+		PFLU_RS23685	0.68	-0.8
5,310,184	+		PFLU_RS23685	0.68	-0.1
5,310,281	-		PFLU_RS23685	0.74	-1.2
5,310,338	-		PFLU_RS23685	0.77	+1.0
5,310,351	+		PFLU_RS23685	0.78	-0.4
5,310,351	+		PFLU_RS23685	0.78	-0.8
5,310,351	+		PFLU_RS23685	0.78	+0.3
5,310,351	+		PFLU_RS23685	0.78	-0.8
5,310,351	+		PFLU_RS23685	0.78	-0.7
5,310,352	-		PFLU_RS23685	0.78	-0.0
5,310,352	-		PFLU_RS23685	0.78	+0.7
5,310,352	-		PFLU_RS23685	0.78	-0.4
5,310,352	-		PFLU_RS23685	0.78	+0.7
5,310,352	-		PFLU_RS23685	0.78	-1.1
5,310,352	-		PFLU_RS23685	0.78	-0.5
5,310,352	-		PFLU_RS23685	0.78	-0.1
5,310,394	+		PFLU_RS23685	0.81	+0.6
5,310,395	-		PFLU_RS23685	0.81	+1.0
5,310,395	-		PFLU_RS23685	0.81	-0.5
5,310,526	+		PFLU_RS23685	0.89	+0.7
5,310,527	-		PFLU_RS23685	0.89	-0.3
5,310,565	+				-0.5
5,310,565	+				+0.4
5,310,565	+				-0.0
5,310,565	+				-0.6
5,310,565	+				+2.3
5,310,565	+				-0.6
5,310,565	+				+1.0
5,310,566	-				-0.7
5,310,566	-				-0.2
5,310,652	+				-0.1
5,310,652	+				-1.3
5,310,653	-				+0.1
5,310,653	-				-0.8
5,310,679	-				+0.0
5,310,720	+				+0.6
5,310,720	+				-1.7
5,310,720	+				+1.4
5,310,721	-				-1.2
5,310,721	-				+0.3
5,310,721	-				-0.5
5,310,721	-				-1.4
5,310,721	-				+0.4
5,310,734	+				-0.4
5,310,734	+				-0.5
5,310,735	-				+0.8
5,310,735	-				+0.1
5,310,735	-				-0.3
5,310,763	+				-3.1
5,310,763	+				-0.1
5,310,763	+				-1.2
5,310,764	-				-0.8
5,310,764	-				+1.0
5,310,764	-				-0.8
5,310,772	+				-0.6
5,310,772	+				-1.4
5,310,772	+				+0.9
5,310,772	+				-0.6
5,310,772	+				-0.0
5,310,772	+				-0.8
5,310,772	+				+0.1
5,310,772	+				-1.8
5,310,773	-				-0.4
5,310,773	-				+0.5
5,310,773	-				+1.6
5,310,773	-				+0.6
5,310,773	-				+1.0
5,310,773	-				-1.2
5,310,773	-				+1.0
5,310,773	-				-0.5
5,310,778	+				+0.3
5,310,778	+				+1.6
5,310,778	+				-0.5
5,310,778	+				+0.8
5,310,778	+				-0.4
5,310,779	-				-0.7
5,310,779	-				-1.1
5,310,779	-				+0.3
5,310,780	+				-1.5
5,310,781	-				+0.7
5,310,811	+				+0.0
5,310,812	-				+0.0
5,310,812	-				+0.4
5,310,830	-				+1.3
5,310,830	-				-0.4
5,310,847	+				+0.3
5,310,847	+				-1.7
5,310,847	+				+1.0
5,310,847	+				+1.0
5,310,848	-				+0.6
5,310,848	-				+1.1
5,310,848	-				+0.9
5,310,848	-				-0.5
5,310,865	+				-0.1
5,310,865	+				-0.3
5,310,865	+				+0.8
5,310,865	+				-0.3
5,310,865	+				-0.8
5,310,865	+				+0.6
5,310,866	-				+0.8
5,310,866	-				-0.2
5,310,907	+				-0.1
5,310,907	+				-1.0
5,310,907	+				-0.4
5,310,907	+				+1.0
5,310,907	+				-0.3
5,310,907	+				+0.3
5,310,907	+				-0.7
5,310,907	+				+0.6
5,310,907	+				+0.4
5,310,907	+				-1.1
5,310,908	-				-0.3
5,310,908	-				-0.2
5,310,908	-				-0.2
5,310,908	-				+0.9
5,310,908	-				+0.9
5,310,908	-				+0.2
5,310,908	-				+0.7
5,310,908	-				-0.5
5,310,908	-				-0.1
5,310,908	-				+0.5
5,310,908	-				+0.2
5,310,908	-				+0.2
5,310,908	-				-1.1
5,310,908	-				-1.7
5,310,908	-				-0.1
5,310,908	-				+0.8
5,310,908	-				-0.7
5,310,908	-				+1.2
5,310,908	-				+0.1
5,310,908	-				+0.9
5,310,908	-				+1.6
5,310,908	-				-0.0
5,310,909	+				+0.9
5,310,909	+				+1.2
5,310,909	+				+1.6
5,310,909	+				+2.0
5,310,909	+				-0.4
5,310,909	+				-0.2
5,310,909	+				-0.4
5,310,909	+				+0.2
5,310,909	+				-2.3
5,310,909	+				+0.4
5,310,909	+				+0.5
5,310,909	+				-0.8
5,310,909	+				+0.0
5,310,909	+				-1.3
5,310,909	+				-0.6
5,310,909	+				+1.9
5,310,909	+				+0.4
5,310,909	+				-1.4
5,310,909	+				-1.0
5,310,909	+				+0.0
5,310,910	-				+0.2
5,310,910	-				-2.4
5,310,910	-				+0.9
5,310,910	-				+0.6
5,310,910	-				-1.5
5,310,910	-				+0.7
5,310,910	-				+1.0
5,310,910	-				+0.9
5,310,910	-				+1.0
5,310,910	-				-0.2
5,310,910	-				+0.1
5,311,017	+				-0.0
5,311,017	+				-0.6
5,311,017	+				+0.6
5,311,017	+				-0.3
5,311,017	+				+0.5
5,311,018	-				+1.0
5,311,018	-				-0.4
5,311,143	+		PFLU_RS23690	0.18	+0.6
5,311,259	+		PFLU_RS23690	0.31	-0.7
5,311,317	+		PFLU_RS23690	0.37	+0.5
5,311,317	+		PFLU_RS23690	0.37	+1.1
5,311,317	+		PFLU_RS23690	0.37	+1.1
5,311,317	+		PFLU_RS23690	0.37	+0.7
5,311,317	+		PFLU_RS23690	0.37	+0.2
5,311,317	+		PFLU_RS23690	0.37	+0.0
5,311,317	+		PFLU_RS23690	0.37	-0.2
5,311,318	-		PFLU_RS23690	0.37	-0.5
5,311,318	-		PFLU_RS23690	0.37	+0.8
5,311,318	-		PFLU_RS23690	0.37	+0.6
5,311,318	-		PFLU_RS23690	0.37	-0.1
5,311,318	-		PFLU_RS23690	0.37	-0.7
5,311,332	+		PFLU_RS23690	0.38	+0.8
5,311,332	+		PFLU_RS23690	0.38	-0.5
5,311,332	+		PFLU_RS23690	0.38	-0.4
5,311,332	+		PFLU_RS23690	0.38	-2.1
5,311,332	+		PFLU_RS23690	0.38	-0.4
5,311,332	+		PFLU_RS23690	0.38	-0.4
5,311,333	-		PFLU_RS23690	0.39	+0.5
5,311,333	-		PFLU_RS23690	0.39	-0.5
5,311,405	-		PFLU_RS23690	0.46	-0.8
5,311,569	+		PFLU_RS23690	0.63	-1.0
5,311,569	+		PFLU_RS23690	0.63	-1.1
5,311,569	+		PFLU_RS23690	0.63	-1.0
5,311,569	+		PFLU_RS23690	0.63	-0.2
5,311,569	+		PFLU_RS23690	0.63	+0.7
5,311,569	+		PFLU_RS23690	0.63	+0.9
5,311,569	+		PFLU_RS23690	0.63	-1.0
5,311,570	-		PFLU_RS23690	0.64	-0.5
5,311,570	-		PFLU_RS23690	0.64	-1.0
5,311,570	-		PFLU_RS23690	0.64	-2.2
5,311,570	-		PFLU_RS23690	0.64	+0.6
5,311,570	-		PFLU_RS23690	0.64	+0.0
5,311,570	-		PFLU_RS23690	0.64	+0.2
5,311,570	-		PFLU_RS23690	0.64	-0.3