Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23595 and PFLU_RS23600 are separated by 315 nucleotides PFLU_RS23600 and PFLU_RS23605 are separated by 224 nucleotides PFLU_RS23605 and PFLU_RS23610 are separated by 152 nucleotides
PFLU_RS23595: PFLU_RS23595 - LacI family DNA-binding transcriptional regulator, at 5,293,013 to 5,294,041
_RS23595
PFLU_RS23600: PFLU_RS23600 - hypothetical protein, at 5,294,357 to 5,294,587
_RS23600
PFLU_RS23605: PFLU_RS23605 - hypothetical protein, at 5,294,812 to 5,295,237
_RS23605
PFLU_RS23610: PFLU_RS23610 - glutathione S-transferase family protein, at 5,295,390 to 5,296,022
_RS23610
Position (kb) 5294
5295 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5293.382 kb on + strand, within PFLU_RS23595 at 5293.382 kb on + strand, within PFLU_RS23595 at 5293.382 kb on + strand, within PFLU_RS23595 at 5293.382 kb on + strand, within PFLU_RS23595 at 5293.382 kb on + strand, within PFLU_RS23595 at 5293.383 kb on - strand, within PFLU_RS23595 at 5293.383 kb on - strand, within PFLU_RS23595 at 5293.383 kb on - strand, within PFLU_RS23595 at 5293.383 kb on - strand, within PFLU_RS23595 at 5293.383 kb on - strand, within PFLU_RS23595 at 5293.383 kb on - strand, within PFLU_RS23595 at 5293.383 kb on - strand, within PFLU_RS23595 at 5293.478 kb on + strand, within PFLU_RS23595 at 5293.478 kb on + strand, within PFLU_RS23595 at 5293.478 kb on + strand, within PFLU_RS23595 at 5293.478 kb on + strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.479 kb on - strand, within PFLU_RS23595 at 5293.592 kb on + strand, within PFLU_RS23595 at 5293.593 kb on - strand, within PFLU_RS23595 at 5293.593 kb on - strand, within PFLU_RS23595 at 5293.593 kb on - strand, within PFLU_RS23595 at 5293.593 kb on - strand, within PFLU_RS23595 at 5293.593 kb on - strand, within PFLU_RS23595 at 5293.671 kb on - strand, within PFLU_RS23595 at 5293.671 kb on - strand, within PFLU_RS23595 at 5293.737 kb on + strand, within PFLU_RS23595 at 5293.737 kb on + strand, within PFLU_RS23595 at 5293.738 kb on - strand, within PFLU_RS23595 at 5293.738 kb on - strand, within PFLU_RS23595 at 5293.743 kb on + strand, within PFLU_RS23595 at 5293.743 kb on + strand, within PFLU_RS23595 at 5293.743 kb on + strand, within PFLU_RS23595 at 5293.744 kb on - strand, within PFLU_RS23595 at 5293.744 kb on - strand, within PFLU_RS23595 at 5293.959 kb on + strand at 5293.959 kb on + strand at 5293.959 kb on + strand at 5293.960 kb on - strand at 5293.960 kb on - strand at 5293.960 kb on - strand at 5293.960 kb on - strand at 5293.960 kb on - strand at 5294.035 kb on + strand at 5294.035 kb on + strand at 5294.035 kb on + strand at 5294.035 kb on + strand at 5294.035 kb on + strand at 5294.035 kb on + strand at 5294.035 kb on + strand at 5294.035 kb on + strand at 5294.035 kb on + strand at 5294.036 kb on - strand at 5294.036 kb on - strand at 5294.036 kb on - strand at 5294.036 kb on - strand at 5294.036 kb on - strand at 5294.036 kb on - strand at 5294.036 kb on - strand at 5294.036 kb on - strand at 5294.036 kb on - strand at 5294.039 kb on + strand at 5294.039 kb on + strand at 5294.039 kb on + strand at 5294.039 kb on + strand at 5294.039 kb on + strand at 5294.039 kb on + strand at 5294.039 kb on + strand at 5294.039 kb on + strand at 5294.039 kb on + strand at 5294.039 kb on + strand at 5294.040 kb on - strand at 5294.040 kb on - strand at 5294.040 kb on - strand at 5294.040 kb on - strand at 5294.040 kb on - strand at 5294.040 kb on - strand at 5294.040 kb on - strand at 5294.040 kb on - strand at 5294.040 kb on - strand at 5294.040 kb on - strand at 5294.051 kb on - strand at 5294.072 kb on + strand at 5294.094 kb on - strand at 5294.099 kb on + strand at 5294.099 kb on + strand at 5294.100 kb on - strand at 5294.100 kb on - strand at 5294.100 kb on - strand at 5294.142 kb on - strand at 5294.142 kb on - strand at 5294.180 kb on + strand at 5294.180 kb on + strand at 5294.180 kb on + strand at 5294.180 kb on + strand at 5294.180 kb on + strand at 5294.180 kb on + strand at 5294.181 kb on - strand at 5294.181 kb on - strand at 5294.181 kb on - strand at 5294.181 kb on - strand at 5294.184 kb on + strand at 5294.184 kb on + strand at 5294.184 kb on + strand at 5294.185 kb on - strand at 5294.185 kb on - strand at 5294.206 kb on + strand at 5294.206 kb on + strand at 5294.206 kb on + strand at 5294.206 kb on + strand at 5294.206 kb on + strand at 5294.206 kb on + strand at 5294.206 kb on + strand at 5294.207 kb on - strand at 5294.207 kb on - strand at 5294.207 kb on - strand at 5294.207 kb on - strand at 5294.216 kb on + strand at 5294.217 kb on - strand at 5294.286 kb on - strand at 5294.286 kb on - strand at 5294.286 kb on - strand at 5294.286 kb on - strand at 5294.286 kb on - strand at 5294.289 kb on - strand at 5294.297 kb on + strand at 5294.297 kb on + strand at 5294.298 kb on - strand at 5294.298 kb on - strand at 5294.298 kb on - strand at 5294.298 kb on - strand at 5294.316 kb on + strand at 5294.317 kb on - strand at 5294.317 kb on - strand at 5294.319 kb on + strand at 5294.319 kb on + strand at 5294.320 kb on - strand at 5294.330 kb on + strand at 5294.330 kb on + strand at 5294.330 kb on + strand at 5294.330 kb on + strand at 5294.331 kb on - strand at 5294.331 kb on - strand at 5294.331 kb on - strand at 5294.347 kb on + strand at 5294.348 kb on - strand at 5294.348 kb on - strand at 5294.348 kb on - strand at 5294.348 kb on - strand at 5294.432 kb on + strand, within PFLU_RS23600 at 5294.432 kb on + strand, within PFLU_RS23600 at 5294.432 kb on + strand, within PFLU_RS23600 at 5294.432 kb on + strand, within PFLU_RS23600 at 5294.432 kb on + strand, within PFLU_RS23600 at 5294.432 kb on + strand, within PFLU_RS23600 at 5294.433 kb on - strand, within PFLU_RS23600 at 5294.433 kb on - strand, within PFLU_RS23600 at 5294.433 kb on - strand, within PFLU_RS23600 at 5294.442 kb on + strand, within PFLU_RS23600 at 5294.442 kb on + strand, within PFLU_RS23600 at 5294.443 kb on - strand, within PFLU_RS23600 at 5294.443 kb on - strand, within PFLU_RS23600 at 5294.443 kb on - strand, within PFLU_RS23600 at 5294.443 kb on - strand, within PFLU_RS23600 at 5294.443 kb on - strand, within PFLU_RS23600 at 5294.443 kb on - strand, within PFLU_RS23600 at 5294.443 kb on - strand, within PFLU_RS23600 at 5294.443 kb on - strand, within PFLU_RS23600 at 5294.443 kb on - strand, within PFLU_RS23600 at 5294.519 kb on + strand, within PFLU_RS23600 at 5294.519 kb on + strand, within PFLU_RS23600 at 5294.520 kb on - strand, within PFLU_RS23600 at 5294.520 kb on - strand, within PFLU_RS23600 at 5294.520 kb on - strand, within PFLU_RS23600 at 5294.520 kb on - strand, within PFLU_RS23600 at 5294.551 kb on - strand, within PFLU_RS23600 at 5294.699 kb on - strand at 5294.722 kb on - strand at 5294.739 kb on + strand at 5294.746 kb on + strand at 5294.749 kb on + strand at 5294.750 kb on - strand at 5294.768 kb on + strand at 5294.880 kb on + strand, within PFLU_RS23605 at 5294.913 kb on + strand, within PFLU_RS23605 at 5294.914 kb on - strand, within PFLU_RS23605 at 5294.921 kb on + strand, within PFLU_RS23605 at 5294.922 kb on - strand, within PFLU_RS23605 at 5294.922 kb on - strand, within PFLU_RS23605 at 5294.926 kb on - strand, within PFLU_RS23605 at 5294.945 kb on + strand, within PFLU_RS23605 at 5294.945 kb on + strand, within PFLU_RS23605 at 5294.946 kb on - strand, within PFLU_RS23605 at 5294.967 kb on + strand, within PFLU_RS23605 at 5294.967 kb on + strand, within PFLU_RS23605 at 5294.968 kb on - strand, within PFLU_RS23605 at 5295.001 kb on + strand, within PFLU_RS23605 at 5295.001 kb on + strand, within PFLU_RS23605 at 5295.001 kb on + strand, within PFLU_RS23605 at 5295.001 kb on + strand, within PFLU_RS23605 at 5295.001 kb on + strand, within PFLU_RS23605 at 5295.002 kb on - strand, within PFLU_RS23605 at 5295.002 kb on - strand, within PFLU_RS23605 at 5295.002 kb on - strand, within PFLU_RS23605 at 5295.003 kb on + strand, within PFLU_RS23605 at 5295.041 kb on + strand, within PFLU_RS23605 at 5295.041 kb on + strand, within PFLU_RS23605 at 5295.042 kb on - strand, within PFLU_RS23605 at 5295.053 kb on + strand, within PFLU_RS23605 at 5295.053 kb on + strand, within PFLU_RS23605 at 5295.053 kb on + strand, within PFLU_RS23605 at 5295.085 kb on - strand, within PFLU_RS23605 at 5295.124 kb on + strand, within PFLU_RS23605 at 5295.125 kb on - strand, within PFLU_RS23605 at 5295.126 kb on + strand, within PFLU_RS23605 at 5295.127 kb on - strand, within PFLU_RS23605 at 5295.147 kb on - strand, within PFLU_RS23605 at 5295.280 kb on - strand at 5295.306 kb on + strand at 5295.306 kb on + strand at 5295.306 kb on + strand at 5295.334 kb on + strand at 5295.334 kb on + strand at 5295.334 kb on + strand at 5295.335 kb on - strand at 5295.335 kb on - strand at 5295.336 kb on + strand at 5295.336 kb on + strand at 5295.336 kb on + strand at 5295.336 kb on + strand at 5295.336 kb on + strand at 5295.336 kb on + strand at 5295.336 kb on + strand at 5295.336 kb on + strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.337 kb on - strand at 5295.350 kb on + strand at 5295.350 kb on + strand at 5295.351 kb on - strand at 5295.446 kb on - strand at 5295.446 kb on - strand at 5295.446 kb on - strand at 5295.478 kb on - strand, within PFLU_RS23610 at 5295.478 kb on - strand, within PFLU_RS23610
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 5,293,382 + PFLU_RS23595 0.36 -0.1 5,293,382 + PFLU_RS23595 0.36 +0.0 5,293,382 + PFLU_RS23595 0.36 +0.3 5,293,382 + PFLU_RS23595 0.36 -1.0 5,293,382 + PFLU_RS23595 0.36 +0.7 5,293,383 - PFLU_RS23595 0.36 -0.1 5,293,383 - PFLU_RS23595 0.36 -0.8 5,293,383 - PFLU_RS23595 0.36 +0.1 5,293,383 - PFLU_RS23595 0.36 -0.3 5,293,383 - PFLU_RS23595 0.36 -0.8 5,293,383 - PFLU_RS23595 0.36 -1.1 5,293,383 - PFLU_RS23595 0.36 -0.2 5,293,478 + PFLU_RS23595 0.45 -0.7 5,293,478 + PFLU_RS23595 0.45 +0.8 5,293,478 + PFLU_RS23595 0.45 -0.3 5,293,478 + PFLU_RS23595 0.45 -0.0 5,293,479 - PFLU_RS23595 0.45 -1.1 5,293,479 - PFLU_RS23595 0.45 -0.4 5,293,479 - PFLU_RS23595 0.45 -0.7 5,293,479 - PFLU_RS23595 0.45 +0.3 5,293,479 - PFLU_RS23595 0.45 +0.1 5,293,479 - PFLU_RS23595 0.45 -0.6 5,293,479 - PFLU_RS23595 0.45 -1.6 5,293,479 - PFLU_RS23595 0.45 +0.3 5,293,479 - PFLU_RS23595 0.45 -0.3 5,293,479 - PFLU_RS23595 0.45 -0.2 5,293,479 - PFLU_RS23595 0.45 -2.0 5,293,479 - PFLU_RS23595 0.45 -0.4 5,293,479 - PFLU_RS23595 0.45 -1.6 5,293,479 - PFLU_RS23595 0.45 -0.5 5,293,479 - PFLU_RS23595 0.45 -0.9 5,293,479 - PFLU_RS23595 0.45 +0.3 5,293,479 - PFLU_RS23595 0.45 -0.7 5,293,592 + PFLU_RS23595 0.56 +0.9 5,293,593 - PFLU_RS23595 0.56 -0.4 5,293,593 - PFLU_RS23595 0.56 -0.3 5,293,593 - PFLU_RS23595 0.56 +1.0 5,293,593 - PFLU_RS23595 0.56 -0.2 5,293,593 - PFLU_RS23595 0.56 +0.3 5,293,671 - PFLU_RS23595 0.64 -1.3 5,293,671 - PFLU_RS23595 0.64 -0.4 5,293,737 + PFLU_RS23595 0.70 -0.5 5,293,737 + PFLU_RS23595 0.70 +0.0 5,293,738 - PFLU_RS23595 0.70 -0.9 5,293,738 - PFLU_RS23595 0.70 -2.1 5,293,743 + PFLU_RS23595 0.71 -0.4 5,293,743 + PFLU_RS23595 0.71 -0.1 5,293,743 + PFLU_RS23595 0.71 -0.7 5,293,744 - PFLU_RS23595 0.71 -0.6 5,293,744 - PFLU_RS23595 0.71 -0.7 5,293,959 + -1.0 5,293,959 + +0.0 5,293,959 + -0.7 5,293,960 - +0.3 5,293,960 - +1.6 5,293,960 - -1.3 5,293,960 - -1.0 5,293,960 - +1.4 5,294,035 + +1.1 5,294,035 + -0.3 5,294,035 + +0.1 5,294,035 + -1.0 5,294,035 + +0.8 5,294,035 + +0.9 5,294,035 + -1.3 5,294,035 + -1.2 5,294,035 + +0.6 5,294,036 - -0.2 5,294,036 - -0.3 5,294,036 - -1.7 5,294,036 - -0.2 5,294,036 - -0.6 5,294,036 - +1.2 5,294,036 - -0.1 5,294,036 - +0.4 5,294,036 - +0.1 5,294,039 + -0.3 5,294,039 + +0.4 5,294,039 + +0.1 5,294,039 + +0.1 5,294,039 + -0.2 5,294,039 + +0.6 5,294,039 + -3.0 5,294,039 + +0.2 5,294,039 + -0.5 5,294,039 + +1.4 5,294,040 - +0.2 5,294,040 - +0.3 5,294,040 - -0.3 5,294,040 - -0.9 5,294,040 - -0.3 5,294,040 - +0.4 5,294,040 - +0.6 5,294,040 - +0.5 5,294,040 - +0.8 5,294,040 - -0.1 5,294,051 - +0.0 5,294,072 + +0.7 5,294,094 - -0.8 5,294,099 + +1.3 5,294,099 + -0.1 5,294,100 - +1.4 5,294,100 - -0.2 5,294,100 - -0.6 5,294,142 - +0.4 5,294,142 - -0.5 5,294,180 + +0.2 5,294,180 + +0.3 5,294,180 + +1.3 5,294,180 + +0.6 5,294,180 + -0.6 5,294,180 + -0.3 5,294,181 - +0.8 5,294,181 - -0.4 5,294,181 - -0.1 5,294,181 - -0.1 5,294,184 + +1.2 5,294,184 + -0.6 5,294,184 + +0.9 5,294,185 - +0.9 5,294,185 - +0.1 5,294,206 + +1.0 5,294,206 + -1.0 5,294,206 + +0.2 5,294,206 + -0.8 5,294,206 + +0.3 5,294,206 + +0.2 5,294,206 + -0.3 5,294,207 - +0.4 5,294,207 - +0.8 5,294,207 - +1.0 5,294,207 - -1.9 5,294,216 + -1.4 5,294,217 - +0.5 5,294,286 - -0.4 5,294,286 - +1.2 5,294,286 - +0.1 5,294,286 - -2.0 5,294,286 - +1.5 5,294,289 - +0.6 5,294,297 + -1.1 5,294,297 + -2.1 5,294,298 - +1.2 5,294,298 - +0.1 5,294,298 - +0.7 5,294,298 - +1.2 5,294,316 + +0.7 5,294,317 - +0.2 5,294,317 - -0.8 5,294,319 + -0.2 5,294,319 + +0.3 5,294,320 - +0.2 5,294,330 + -0.3 5,294,330 + +0.5 5,294,330 + -0.7 5,294,330 + -1.7 5,294,331 - -1.5 5,294,331 - +0.4 5,294,331 - +1.3 5,294,347 + +0.3 5,294,348 - -1.0 5,294,348 - -1.3 5,294,348 - -0.9 5,294,348 - +0.4 5,294,432 + PFLU_RS23600 0.32 +0.0 5,294,432 + PFLU_RS23600 0.32 -1.0 5,294,432 + PFLU_RS23600 0.32 +1.7 5,294,432 + PFLU_RS23600 0.32 -0.0 5,294,432 + PFLU_RS23600 0.32 -0.6 5,294,432 + PFLU_RS23600 0.32 -0.1 5,294,433 - PFLU_RS23600 0.33 -0.3 5,294,433 - PFLU_RS23600 0.33 -0.4 5,294,433 - PFLU_RS23600 0.33 -0.5 5,294,442 + PFLU_RS23600 0.37 +0.2 5,294,442 + PFLU_RS23600 0.37 -1.4 5,294,443 - PFLU_RS23600 0.37 +0.3 5,294,443 - PFLU_RS23600 0.37 -0.5 5,294,443 - PFLU_RS23600 0.37 -1.6 5,294,443 - PFLU_RS23600 0.37 +0.6 5,294,443 - PFLU_RS23600 0.37 +0.0 5,294,443 - PFLU_RS23600 0.37 -0.3 5,294,443 - PFLU_RS23600 0.37 +1.0 5,294,443 - PFLU_RS23600 0.37 +0.3 5,294,443 - PFLU_RS23600 0.37 -0.1 5,294,519 + PFLU_RS23600 0.70 -0.3 5,294,519 + PFLU_RS23600 0.70 -0.4 5,294,520 - PFLU_RS23600 0.71 -0.7 5,294,520 - PFLU_RS23600 0.71 -0.9 5,294,520 - PFLU_RS23600 0.71 -0.4 5,294,520 - PFLU_RS23600 0.71 +0.9 5,294,551 - PFLU_RS23600 0.84 -0.5 5,294,699 - +0.9 5,294,722 - -0.6 5,294,739 + +1.5 5,294,746 + +0.6 5,294,749 + -2.0 5,294,750 - -0.7 5,294,768 + +0.5 5,294,880 + PFLU_RS23605 0.16 +1.0 5,294,913 + PFLU_RS23605 0.24 -0.2 5,294,914 - PFLU_RS23605 0.24 +0.6 5,294,921 + PFLU_RS23605 0.26 +0.6 5,294,922 - PFLU_RS23605 0.26 +1.5 5,294,922 - PFLU_RS23605 0.26 +0.7 5,294,926 - PFLU_RS23605 0.27 +1.0 5,294,945 + PFLU_RS23605 0.31 +0.3 5,294,945 + PFLU_RS23605 0.31 +0.5 5,294,946 - PFLU_RS23605 0.31 -2.3 5,294,967 + PFLU_RS23605 0.36 +0.9 5,294,967 + PFLU_RS23605 0.36 -2.1 5,294,968 - PFLU_RS23605 0.37 -0.5 5,295,001 + PFLU_RS23605 0.44 -0.5 5,295,001 + PFLU_RS23605 0.44 -1.0 5,295,001 + PFLU_RS23605 0.44 -0.2 5,295,001 + PFLU_RS23605 0.44 -0.4 5,295,001 + PFLU_RS23605 0.44 +1.4 5,295,002 - PFLU_RS23605 0.45 -0.8 5,295,002 - PFLU_RS23605 0.45 -0.7 5,295,002 - PFLU_RS23605 0.45 -0.6 5,295,003 + PFLU_RS23605 0.45 +0.0 5,295,041 + PFLU_RS23605 0.54 -0.1 5,295,041 + PFLU_RS23605 0.54 -1.7 5,295,042 - PFLU_RS23605 0.54 +0.5 5,295,053 + PFLU_RS23605 0.57 +0.6 5,295,053 + PFLU_RS23605 0.57 -0.4 5,295,053 + PFLU_RS23605 0.57 -1.6 5,295,085 - PFLU_RS23605 0.64 +0.1 5,295,124 + PFLU_RS23605 0.73 +2.6 5,295,125 - PFLU_RS23605 0.73 +0.1 5,295,126 + PFLU_RS23605 0.74 -0.9 5,295,127 - PFLU_RS23605 0.74 +0.7 5,295,147 - PFLU_RS23605 0.79 +0.9 5,295,280 - +0.6 5,295,306 + -0.3 5,295,306 + -1.0 5,295,306 + +0.3 5,295,334 + -0.4 5,295,334 + -2.3 5,295,334 + -0.6 5,295,335 - -0.2 5,295,335 - +0.1 5,295,336 + -1.0 5,295,336 + +1.0 5,295,336 + -0.6 5,295,336 + -0.7 5,295,336 + +1.9 5,295,336 + -0.1 5,295,336 + +1.6 5,295,336 + -1.1 5,295,337 - -0.9 5,295,337 - +1.0 5,295,337 - +0.3 5,295,337 - -1.4 5,295,337 - +0.8 5,295,337 - -0.6 5,295,337 - +0.0 5,295,337 - -0.2 5,295,337 - -0.1 5,295,337 - -0.6 5,295,337 - -0.1 5,295,350 + +0.0 5,295,350 + +0.4 5,295,351 - +0.8 5,295,446 - +1.2 5,295,446 - -0.0 5,295,446 - +0.0 5,295,478 - PFLU_RS23610 0.14 +0.4 5,295,478 - PFLU_RS23610 0.14 +0.7
Or see this region's nucleotide sequence