Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23450 and PFLU_RS23455 are separated by 71 nucleotides PFLU_RS23455 and PFLU_RS23460 overlap by 4 nucleotides PFLU_RS23460 and PFLU_RS23465 are separated by 20 nucleotides PFLU_RS23465 and PFLU_RS23470 are separated by 232 nucleotides
PFLU_RS23450: PFLU_RS23450 - LysR family transcriptional regulator, at 5,267,151 to 5,268,029
_RS23450
PFLU_RS23455: PFLU_RS23455 - CTP synthase, at 5,268,101 to 5,268,811
_RS23455
PFLU_RS23460: PFLU_RS23460 - antibiotic biosynthesis monooxygenase, at 5,268,808 to 5,269,128
_RS23460
PFLU_RS23465: PFLU_RS23465 - DUF2025 family protein, at 5,269,149 to 5,269,472
_RS23465
PFLU_RS23470: PFLU_RS23470 - glycerophosphoryl diester phosphodiesterase, at 5,269,705 to 5,270,832
_RS23470
Position (kb) 5268
5269
5270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5267.912 kb on + strand, within PFLU_RS23450 at 5267.912 kb on + strand, within PFLU_RS23450 at 5267.912 kb on + strand, within PFLU_RS23450 at 5267.913 kb on - strand, within PFLU_RS23450 at 5267.913 kb on - strand, within PFLU_RS23450 at 5267.931 kb on + strand, within PFLU_RS23450 at 5267.931 kb on + strand, within PFLU_RS23450 at 5267.995 kb on + strand at 5268.068 kb on + strand at 5268.068 kb on + strand at 5268.069 kb on - strand at 5268.069 kb on - strand at 5268.069 kb on - strand at 5268.069 kb on - strand at 5268.071 kb on - strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.104 kb on + strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.105 kb on - strand at 5268.149 kb on + strand at 5268.149 kb on + strand at 5268.149 kb on + strand at 5268.149 kb on + strand at 5268.149 kb on + strand at 5268.149 kb on + strand at 5268.150 kb on - strand at 5268.150 kb on - strand at 5268.150 kb on - strand at 5268.272 kb on + strand, within PFLU_RS23455 at 5268.273 kb on - strand, within PFLU_RS23455 at 5268.500 kb on - strand, within PFLU_RS23455 at 5268.539 kb on + strand, within PFLU_RS23455 at 5268.539 kb on + strand, within PFLU_RS23455 at 5268.539 kb on + strand, within PFLU_RS23455 at 5268.539 kb on + strand, within PFLU_RS23455 at 5268.540 kb on - strand, within PFLU_RS23455 at 5268.540 kb on - strand, within PFLU_RS23455 at 5268.540 kb on - strand, within PFLU_RS23455 at 5268.540 kb on - strand, within PFLU_RS23455 at 5268.560 kb on + strand, within PFLU_RS23455 at 5268.838 kb on + strand at 5268.838 kb on + strand at 5268.838 kb on + strand at 5268.839 kb on - strand at 5268.839 kb on - strand at 5268.985 kb on + strand, within PFLU_RS23460 at 5268.985 kb on + strand, within PFLU_RS23460 at 5268.986 kb on - strand, within PFLU_RS23460 at 5269.070 kb on - strand, within PFLU_RS23460 at 5269.112 kb on - strand at 5269.112 kb on - strand at 5269.150 kb on + strand at 5269.150 kb on + strand at 5269.150 kb on + strand at 5269.151 kb on - strand at 5269.202 kb on + strand, within PFLU_RS23465 at 5269.202 kb on + strand, within PFLU_RS23465 at 5269.202 kb on + strand, within PFLU_RS23465 at 5269.202 kb on + strand, within PFLU_RS23465 at 5269.202 kb on + strand, within PFLU_RS23465 at 5269.202 kb on + strand, within PFLU_RS23465 at 5269.202 kb on + strand, within PFLU_RS23465 at 5269.203 kb on - strand, within PFLU_RS23465 at 5269.203 kb on - strand, within PFLU_RS23465 at 5269.203 kb on - strand, within PFLU_RS23465 at 5269.203 kb on - strand, within PFLU_RS23465 at 5269.203 kb on - strand, within PFLU_RS23465 at 5269.203 kb on - strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.204 kb on + strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.205 kb on - strand, within PFLU_RS23465 at 5269.289 kb on + strand, within PFLU_RS23465 at 5269.289 kb on + strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.290 kb on - strand, within PFLU_RS23465 at 5269.383 kb on + strand, within PFLU_RS23465 at 5269.383 kb on + strand, within PFLU_RS23465 at 5269.383 kb on + strand, within PFLU_RS23465 at 5269.383 kb on + strand, within PFLU_RS23465 at 5269.384 kb on - strand, within PFLU_RS23465 at 5269.384 kb on - strand, within PFLU_RS23465 at 5269.384 kb on - strand, within PFLU_RS23465 at 5269.390 kb on + strand, within PFLU_RS23465 at 5269.390 kb on + strand, within PFLU_RS23465 at 5269.390 kb on + strand, within PFLU_RS23465 at 5269.390 kb on + strand, within PFLU_RS23465 at 5269.390 kb on + strand, within PFLU_RS23465 at 5269.391 kb on - strand, within PFLU_RS23465 at 5269.391 kb on - strand, within PFLU_RS23465 at 5269.391 kb on - strand, within PFLU_RS23465 at 5269.391 kb on - strand, within PFLU_RS23465 at 5269.451 kb on + strand at 5269.451 kb on + strand at 5269.451 kb on + strand at 5269.451 kb on + strand at 5269.452 kb on - strand at 5269.452 kb on - strand at 5269.452 kb on - strand at 5269.452 kb on - strand at 5269.475 kb on + strand at 5269.475 kb on + strand at 5269.475 kb on + strand at 5269.475 kb on + strand at 5269.475 kb on + strand at 5269.476 kb on - strand at 5269.476 kb on - strand at 5269.476 kb on - strand at 5269.476 kb on - strand at 5269.476 kb on - strand at 5269.476 kb on - strand at 5269.517 kb on + strand at 5269.568 kb on + strand at 5269.568 kb on + strand at 5269.569 kb on - strand at 5269.569 kb on - strand at 5269.619 kb on - strand at 5269.619 kb on - strand at 5269.681 kb on + strand at 5269.681 kb on + strand at 5269.681 kb on + strand at 5269.681 kb on + strand at 5269.704 kb on + strand at 5269.704 kb on + strand at 5269.704 kb on + strand at 5269.704 kb on + strand at 5269.704 kb on + strand at 5269.705 kb on - strand at 5269.705 kb on - strand at 5269.705 kb on - strand at 5269.705 kb on - strand at 5269.705 kb on - strand at 5269.705 kb on - strand at 5269.705 kb on - strand at 5269.719 kb on + strand at 5269.855 kb on + strand, within PFLU_RS23470 at 5269.855 kb on + strand, within PFLU_RS23470 at 5269.855 kb on + strand, within PFLU_RS23470 at 5269.855 kb on + strand, within PFLU_RS23470 at 5269.855 kb on + strand, within PFLU_RS23470 at 5269.855 kb on + strand, within PFLU_RS23470 at 5269.856 kb on - strand, within PFLU_RS23470 at 5269.856 kb on - strand, within PFLU_RS23470 at 5269.856 kb on - strand, within PFLU_RS23470 at 5269.885 kb on + strand, within PFLU_RS23470 at 5269.885 kb on + strand, within PFLU_RS23470 at 5269.885 kb on + strand, within PFLU_RS23470 at 5269.885 kb on + strand, within PFLU_RS23470 at 5269.886 kb on - strand, within PFLU_RS23470 at 5269.886 kb on - strand, within PFLU_RS23470
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 5,267,912 + PFLU_RS23450 0.87 -0.2 5,267,912 + PFLU_RS23450 0.87 -0.3 5,267,912 + PFLU_RS23450 0.87 -0.2 5,267,913 - PFLU_RS23450 0.87 +0.5 5,267,913 - PFLU_RS23450 0.87 -0.3 5,267,931 + PFLU_RS23450 0.89 -0.7 5,267,931 + PFLU_RS23450 0.89 -2.3 5,267,995 + -0.2 5,268,068 + -0.1 5,268,068 + +1.0 5,268,069 - +0.1 5,268,069 - +1.2 5,268,069 - -0.4 5,268,069 - +0.5 5,268,071 - +0.1 5,268,104 + -0.7 5,268,104 + +0.6 5,268,104 + -0.4 5,268,104 + +0.1 5,268,104 + +0.3 5,268,104 + +1.3 5,268,104 + -0.2 5,268,104 + -0.6 5,268,104 + +0.5 5,268,104 + -0.4 5,268,104 + -0.5 5,268,104 + -0.0 5,268,104 + -0.6 5,268,104 + +0.3 5,268,105 - +1.2 5,268,105 - -0.4 5,268,105 - +0.2 5,268,105 - +1.0 5,268,105 - -0.2 5,268,105 - -0.0 5,268,105 - +0.1 5,268,105 - -0.5 5,268,105 - +0.1 5,268,105 - -0.0 5,268,105 - +2.4 5,268,149 + -0.5 5,268,149 + +0.5 5,268,149 + -0.7 5,268,149 + -0.6 5,268,149 + +0.3 5,268,149 + -1.6 5,268,150 - +0.3 5,268,150 - -0.9 5,268,150 - +1.0 5,268,272 + PFLU_RS23455 0.24 +0.8 5,268,273 - PFLU_RS23455 0.24 -0.0 5,268,500 - PFLU_RS23455 0.56 -1.0 5,268,539 + PFLU_RS23455 0.62 -1.1 5,268,539 + PFLU_RS23455 0.62 +0.7 5,268,539 + PFLU_RS23455 0.62 -0.6 5,268,539 + PFLU_RS23455 0.62 -1.6 5,268,540 - PFLU_RS23455 0.62 -0.8 5,268,540 - PFLU_RS23455 0.62 -0.5 5,268,540 - PFLU_RS23455 0.62 +0.7 5,268,540 - PFLU_RS23455 0.62 -0.8 5,268,560 + PFLU_RS23455 0.65 +0.7 5,268,838 + -0.5 5,268,838 + -0.7 5,268,838 + +0.1 5,268,839 - -0.0 5,268,839 - +1.3 5,268,985 + PFLU_RS23460 0.55 +1.2 5,268,985 + PFLU_RS23460 0.55 +2.2 5,268,986 - PFLU_RS23460 0.55 -0.0 5,269,070 - PFLU_RS23460 0.82 -0.9 5,269,112 - -0.3 5,269,112 - -0.3 5,269,150 + +1.0 5,269,150 + +0.6 5,269,150 + +0.3 5,269,151 - +0.5 5,269,202 + PFLU_RS23465 0.16 -1.3 5,269,202 + PFLU_RS23465 0.16 +1.6 5,269,202 + PFLU_RS23465 0.16 +0.8 5,269,202 + PFLU_RS23465 0.16 +0.8 5,269,202 + PFLU_RS23465 0.16 +0.4 5,269,202 + PFLU_RS23465 0.16 +0.7 5,269,202 + PFLU_RS23465 0.16 -0.6 5,269,203 - PFLU_RS23465 0.17 +1.6 5,269,203 - PFLU_RS23465 0.17 -0.6 5,269,203 - PFLU_RS23465 0.17 +0.4 5,269,203 - PFLU_RS23465 0.17 +1.0 5,269,203 - PFLU_RS23465 0.17 +0.6 5,269,203 - PFLU_RS23465 0.17 +0.2 5,269,204 + PFLU_RS23465 0.17 -0.2 5,269,204 + PFLU_RS23465 0.17 -0.8 5,269,204 + PFLU_RS23465 0.17 -0.0 5,269,204 + PFLU_RS23465 0.17 +0.6 5,269,204 + PFLU_RS23465 0.17 +1.0 5,269,204 + PFLU_RS23465 0.17 +0.3 5,269,204 + PFLU_RS23465 0.17 +0.8 5,269,204 + PFLU_RS23465 0.17 -0.2 5,269,204 + PFLU_RS23465 0.17 +0.3 5,269,204 + PFLU_RS23465 0.17 -1.2 5,269,204 + PFLU_RS23465 0.17 +0.1 5,269,204 + PFLU_RS23465 0.17 +0.7 5,269,204 + PFLU_RS23465 0.17 +0.9 5,269,204 + PFLU_RS23465 0.17 -0.3 5,269,204 + PFLU_RS23465 0.17 -1.1 5,269,204 + PFLU_RS23465 0.17 +0.2 5,269,204 + PFLU_RS23465 0.17 -0.5 5,269,204 + PFLU_RS23465 0.17 -0.6 5,269,204 + PFLU_RS23465 0.17 +1.2 5,269,204 + PFLU_RS23465 0.17 +0.6 5,269,204 + PFLU_RS23465 0.17 -0.6 5,269,204 + PFLU_RS23465 0.17 +0.8 5,269,204 + PFLU_RS23465 0.17 +1.2 5,269,204 + PFLU_RS23465 0.17 -2.0 5,269,204 + PFLU_RS23465 0.17 -0.2 5,269,204 + PFLU_RS23465 0.17 +1.1 5,269,205 - PFLU_RS23465 0.17 +0.7 5,269,205 - PFLU_RS23465 0.17 +1.6 5,269,205 - PFLU_RS23465 0.17 -1.7 5,269,205 - PFLU_RS23465 0.17 -1.4 5,269,205 - PFLU_RS23465 0.17 -0.2 5,269,205 - PFLU_RS23465 0.17 +1.6 5,269,205 - PFLU_RS23465 0.17 -0.4 5,269,205 - PFLU_RS23465 0.17 +0.5 5,269,205 - PFLU_RS23465 0.17 -0.1 5,269,205 - PFLU_RS23465 0.17 -0.8 5,269,205 - PFLU_RS23465 0.17 +0.7 5,269,205 - PFLU_RS23465 0.17 +1.0 5,269,205 - PFLU_RS23465 0.17 +0.4 5,269,205 - PFLU_RS23465 0.17 -0.6 5,269,205 - PFLU_RS23465 0.17 +0.0 5,269,205 - PFLU_RS23465 0.17 -1.2 5,269,205 - PFLU_RS23465 0.17 -2.3 5,269,205 - PFLU_RS23465 0.17 +1.2 5,269,205 - PFLU_RS23465 0.17 +0.8 5,269,205 - PFLU_RS23465 0.17 +0.4 5,269,205 - PFLU_RS23465 0.17 +0.2 5,269,289 + PFLU_RS23465 0.43 -0.0 5,269,289 + PFLU_RS23465 0.43 +0.2 5,269,290 - PFLU_RS23465 0.44 -0.4 5,269,290 - PFLU_RS23465 0.44 +0.8 5,269,290 - PFLU_RS23465 0.44 +1.3 5,269,290 - PFLU_RS23465 0.44 +0.3 5,269,290 - PFLU_RS23465 0.44 -0.1 5,269,290 - PFLU_RS23465 0.44 -1.2 5,269,290 - PFLU_RS23465 0.44 +1.2 5,269,290 - PFLU_RS23465 0.44 +1.4 5,269,290 - PFLU_RS23465 0.44 -1.2 5,269,290 - PFLU_RS23465 0.44 +0.3 5,269,383 + PFLU_RS23465 0.72 -1.4 5,269,383 + PFLU_RS23465 0.72 +0.2 5,269,383 + PFLU_RS23465 0.72 -1.2 5,269,383 + PFLU_RS23465 0.72 +0.2 5,269,384 - PFLU_RS23465 0.73 -0.3 5,269,384 - PFLU_RS23465 0.73 -0.2 5,269,384 - PFLU_RS23465 0.73 -0.4 5,269,390 + PFLU_RS23465 0.74 +2.3 5,269,390 + PFLU_RS23465 0.74 +0.2 5,269,390 + PFLU_RS23465 0.74 +0.4 5,269,390 + PFLU_RS23465 0.74 +0.1 5,269,390 + PFLU_RS23465 0.74 +0.5 5,269,391 - PFLU_RS23465 0.75 -1.2 5,269,391 - PFLU_RS23465 0.75 -0.3 5,269,391 - PFLU_RS23465 0.75 +2.1 5,269,391 - PFLU_RS23465 0.75 +0.2 5,269,451 + +0.3 5,269,451 + -1.2 5,269,451 + +1.0 5,269,451 + -0.6 5,269,452 - +0.1 5,269,452 - -0.0 5,269,452 - +0.6 5,269,452 - +0.1 5,269,475 + -0.4 5,269,475 + -1.0 5,269,475 + -0.5 5,269,475 + +0.8 5,269,475 + -0.5 5,269,476 - -1.1 5,269,476 - -0.3 5,269,476 - -0.3 5,269,476 - -0.1 5,269,476 - +1.2 5,269,476 - +2.6 5,269,517 + +0.1 5,269,568 + +0.3 5,269,568 + -0.4 5,269,569 - +0.5 5,269,569 - +0.7 5,269,619 - -0.1 5,269,619 - -0.0 5,269,681 + +0.6 5,269,681 + -0.2 5,269,681 + +0.2 5,269,681 + +0.7 5,269,704 + +1.6 5,269,704 + +0.0 5,269,704 + +0.5 5,269,704 + -0.6 5,269,704 + +1.0 5,269,705 - +0.8 5,269,705 - -0.3 5,269,705 - +0.5 5,269,705 - -3.3 5,269,705 - +0.7 5,269,705 - +0.2 5,269,705 - +1.2 5,269,719 + -0.3 5,269,855 + PFLU_RS23470 0.13 -1.2 5,269,855 + PFLU_RS23470 0.13 -0.1 5,269,855 + PFLU_RS23470 0.13 +1.1 5,269,855 + PFLU_RS23470 0.13 +1.0 5,269,855 + PFLU_RS23470 0.13 -1.5 5,269,855 + PFLU_RS23470 0.13 +0.3 5,269,856 - PFLU_RS23470 0.13 -0.3 5,269,856 - PFLU_RS23470 0.13 +1.2 5,269,856 - PFLU_RS23470 0.13 +0.4 5,269,885 + PFLU_RS23470 0.16 +0.1 5,269,885 + PFLU_RS23470 0.16 +0.2 5,269,885 + PFLU_RS23470 0.16 +1.6 5,269,885 + PFLU_RS23470 0.16 -0.3 5,269,886 - PFLU_RS23470 0.16 -0.0 5,269,886 - PFLU_RS23470 0.16 -0.5
Or see this region's nucleotide sequence