Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23205

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS23195 and PFLU_RS23200 are separated by 141 nucleotidesPFLU_RS23200 and PFLU_RS23205 are separated by 48 nucleotidesPFLU_RS23205 and PFLU_RS23210 are separated by 95 nucleotidesPFLU_RS23210 and PFLU_RS23215 are separated by 60 nucleotides PFLU_RS23195: PFLU_RS23195 - flagellar basal body P-ring formation protein FlgA, at 5,212,283 to 5,213,047 _RS23195 PFLU_RS23200: PFLU_RS23200 - flagellar biosynthesis anti-sigma factor FlgM, at 5,213,189 to 5,213,512 _RS23200 PFLU_RS23205: PFLU_RS23205 - flagellar protein FlgN, at 5,213,561 to 5,214,031 _RS23205 PFLU_RS23210: PFLU_RS23210 - pilus assembly protein PilZ, at 5,214,127 to 5,214,876 _RS23210 PFLU_RS23215: PFLU_RS23215 - MFS transporter, at 5,214,937 to 5,216,322 _RS23215 Position (kb) 5213 5214 5215Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5212.732 kb on - strand, within PFLU_RS23195at 5212.732 kb on - strand, within PFLU_RS23195at 5212.769 kb on + strand, within PFLU_RS23195at 5212.769 kb on + strand, within PFLU_RS23195at 5212.770 kb on - strand, within PFLU_RS23195at 5212.770 kb on - strand, within PFLU_RS23195at 5212.807 kb on - strand, within PFLU_RS23195at 5212.821 kb on + strand, within PFLU_RS23195at 5212.921 kb on - strand, within PFLU_RS23195at 5212.969 kb on - strand, within PFLU_RS23195at 5212.969 kb on - strand, within PFLU_RS23195at 5212.969 kb on - strand, within PFLU_RS23195at 5213.043 kb on + strandat 5213.043 kb on + strandat 5213.043 kb on + strandat 5213.044 kb on - strandat 5213.044 kb on - strandat 5213.045 kb on + strandat 5213.045 kb on + strandat 5213.045 kb on + strandat 5213.045 kb on + strandat 5213.045 kb on + strandat 5213.045 kb on + strandat 5213.045 kb on + strandat 5213.045 kb on + strandat 5213.046 kb on - strandat 5213.046 kb on - strandat 5213.046 kb on - strandat 5213.046 kb on - strandat 5213.046 kb on - strandat 5213.076 kb on + strandat 5213.077 kb on - strandat 5213.092 kb on + strandat 5213.092 kb on + strandat 5213.092 kb on + strandat 5213.092 kb on + strandat 5213.093 kb on - strandat 5213.109 kb on + strandat 5213.109 kb on + strandat 5213.109 kb on + strandat 5213.109 kb on + strandat 5213.125 kb on + strandat 5213.126 kb on - strandat 5213.268 kb on + strand, within PFLU_RS23200at 5213.268 kb on + strand, within PFLU_RS23200at 5213.268 kb on + strand, within PFLU_RS23200at 5213.337 kb on + strand, within PFLU_RS23200at 5213.407 kb on + strand, within PFLU_RS23200at 5213.453 kb on + strand, within PFLU_RS23200at 5213.453 kb on + strand, within PFLU_RS23200at 5213.453 kb on + strand, within PFLU_RS23200at 5213.455 kb on + strand, within PFLU_RS23200at 5213.492 kb on - strandat 5213.492 kb on - strandat 5213.543 kb on + strandat 5213.544 kb on - strandat 5213.544 kb on - strandat 5213.544 kb on - strandat 5213.631 kb on + strand, within PFLU_RS23205at 5213.631 kb on + strand, within PFLU_RS23205at 5213.632 kb on - strand, within PFLU_RS23205at 5213.657 kb on + strand, within PFLU_RS23205at 5213.829 kb on + strand, within PFLU_RS23205at 5213.829 kb on + strand, within PFLU_RS23205at 5213.830 kb on - strand, within PFLU_RS23205at 5213.830 kb on - strand, within PFLU_RS23205at 5213.830 kb on - strand, within PFLU_RS23205at 5213.920 kb on + strand, within PFLU_RS23205at 5213.921 kb on - strand, within PFLU_RS23205at 5213.941 kb on + strand, within PFLU_RS23205at 5213.941 kb on + strand, within PFLU_RS23205at 5213.941 kb on + strand, within PFLU_RS23205at 5213.941 kb on + strand, within PFLU_RS23205at 5213.941 kb on + strand, within PFLU_RS23205at 5213.942 kb on - strand, within PFLU_RS23205at 5213.942 kb on - strand, within PFLU_RS23205at 5213.942 kb on - strand, within PFLU_RS23205at 5213.942 kb on - strand, within PFLU_RS23205at 5213.942 kb on - strand, within PFLU_RS23205at 5213.942 kb on - strand, within PFLU_RS23205at 5213.942 kb on - strand, within PFLU_RS23205at 5213.942 kb on - strand, within PFLU_RS23205at 5213.942 kb on - strand, within PFLU_RS23205at 5213.943 kb on + strand, within PFLU_RS23205at 5213.943 kb on + strand, within PFLU_RS23205at 5213.943 kb on + strand, within PFLU_RS23205at 5213.943 kb on + strand, within PFLU_RS23205at 5213.943 kb on + strand, within PFLU_RS23205at 5213.943 kb on + strand, within PFLU_RS23205at 5213.943 kb on + strand, within PFLU_RS23205at 5213.944 kb on - strand, within PFLU_RS23205at 5213.944 kb on - strand, within PFLU_RS23205at 5213.944 kb on - strand, within PFLU_RS23205at 5213.944 kb on - strand, within PFLU_RS23205at 5213.944 kb on - strand, within PFLU_RS23205at 5213.944 kb on - strand, within PFLU_RS23205at 5213.973 kb on - strand, within PFLU_RS23205at 5213.973 kb on - strand, within PFLU_RS23205at 5213.973 kb on - strand, within PFLU_RS23205at 5214.040 kb on + strandat 5214.041 kb on - strandat 5214.096 kb on + strandat 5214.097 kb on - strandat 5214.097 kb on - strandat 5214.097 kb on - strandat 5214.097 kb on - strandat 5214.097 kb on - strandat 5214.102 kb on + strandat 5214.102 kb on + strandat 5214.102 kb on + strandat 5214.103 kb on - strandat 5214.103 kb on - strandat 5214.103 kb on - strandat 5214.103 kb on - strandat 5214.141 kb on + strandat 5214.141 kb on + strandat 5214.142 kb on - strandat 5214.277 kb on + strand, within PFLU_RS23210at 5214.277 kb on + strand, within PFLU_RS23210at 5214.277 kb on + strand, within PFLU_RS23210at 5214.277 kb on + strand, within PFLU_RS23210at 5214.277 kb on + strand, within PFLU_RS23210at 5214.278 kb on - strand, within PFLU_RS23210at 5214.460 kb on + strand, within PFLU_RS23210at 5214.460 kb on + strand, within PFLU_RS23210at 5214.460 kb on + strand, within PFLU_RS23210at 5214.460 kb on + strand, within PFLU_RS23210at 5214.460 kb on + strand, within PFLU_RS23210at 5214.460 kb on + strand, within PFLU_RS23210at 5214.460 kb on + strand, within PFLU_RS23210at 5214.461 kb on - strand, within PFLU_RS23210at 5214.461 kb on - strand, within PFLU_RS23210at 5214.461 kb on - strand, within PFLU_RS23210at 5214.461 kb on - strand, within PFLU_RS23210at 5214.461 kb on - strand, within PFLU_RS23210at 5214.461 kb on - strand, within PFLU_RS23210at 5214.490 kb on + strand, within PFLU_RS23210at 5214.490 kb on + strand, within PFLU_RS23210at 5214.491 kb on - strand, within PFLU_RS23210at 5214.588 kb on + strand, within PFLU_RS23210at 5214.588 kb on + strand, within PFLU_RS23210at 5214.589 kb on - strand, within PFLU_RS23210at 5214.589 kb on - strand, within PFLU_RS23210at 5214.600 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.639 kb on + strand, within PFLU_RS23210at 5214.640 kb on - strand, within PFLU_RS23210at 5214.640 kb on - strand, within PFLU_RS23210at 5214.640 kb on - strand, within PFLU_RS23210at 5214.640 kb on - strand, within PFLU_RS23210at 5214.640 kb on - strand, within PFLU_RS23210at 5214.640 kb on - strand, within PFLU_RS23210at 5214.640 kb on - strand, within PFLU_RS23210at 5214.670 kb on + strand, within PFLU_RS23210at 5214.671 kb on - strand, within PFLU_RS23210at 5214.671 kb on - strand, within PFLU_RS23210at 5214.671 kb on - strand, within PFLU_RS23210at 5214.671 kb on - strand, within PFLU_RS23210at 5214.671 kb on - strand, within PFLU_RS23210at 5214.730 kb on + strand, within PFLU_RS23210at 5214.731 kb on - strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.786 kb on + strand, within PFLU_RS23210at 5214.787 kb on - strand, within PFLU_RS23210at 5214.787 kb on - strand, within PFLU_RS23210at 5214.787 kb on - strand, within PFLU_RS23210at 5214.787 kb on - strand, within PFLU_RS23210at 5214.787 kb on - strand, within PFLU_RS23210at 5214.826 kb on + strandat 5214.826 kb on + strandat 5214.874 kb on + strandat 5214.875 kb on - strandat 5214.875 kb on - strandat 5214.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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5,212,732 - PFLU_RS23195 0.59 +0.0
5,212,732 - PFLU_RS23195 0.59 +0.6
5,212,769 + PFLU_RS23195 0.64 +2.1
5,212,769 + PFLU_RS23195 0.64 +2.4
5,212,770 - PFLU_RS23195 0.64 +0.3
5,212,770 - PFLU_RS23195 0.64 +0.5
5,212,807 - PFLU_RS23195 0.68 +0.8
5,212,821 + PFLU_RS23195 0.70 +1.0
5,212,921 - PFLU_RS23195 0.83 +1.2
5,212,969 - PFLU_RS23195 0.90 +1.9
5,212,969 - PFLU_RS23195 0.90 +1.8
5,212,969 - PFLU_RS23195 0.90 +1.2
5,213,043 + +1.2
5,213,043 + +1.1
5,213,043 + -0.1
5,213,044 - +0.9
5,213,044 - -0.0
5,213,045 + +0.5
5,213,045 + -0.0
5,213,045 + +0.1
5,213,045 + +1.3
5,213,045 + -0.5
5,213,045 + -1.2
5,213,045 + +0.3
5,213,045 + -0.1
5,213,046 - +0.4
5,213,046 - +1.0
5,213,046 - -3.0
5,213,046 - -2.1
5,213,046 - -0.3
5,213,076 + +1.2
5,213,077 - -1.2
5,213,092 + -0.8
5,213,092 + +0.3
5,213,092 + -0.4
5,213,092 + -1.4
5,213,093 - -0.1
5,213,109 + -0.2
5,213,109 + +0.4
5,213,109 + +0.8
5,213,109 + +0.5
5,213,125 + -1.1
5,213,126 - +0.3
5,213,268 + PFLU_RS23200 0.24 -1.0
5,213,268 + PFLU_RS23200 0.24 -0.8
5,213,268 + PFLU_RS23200 0.24 -0.8
5,213,337 + PFLU_RS23200 0.46 +0.6
5,213,407 + PFLU_RS23200 0.67 +1.6
5,213,453 + PFLU_RS23200 0.81 +0.6
5,213,453 + PFLU_RS23200 0.81 +0.6
5,213,453 + PFLU_RS23200 0.81 +1.6
5,213,455 + PFLU_RS23200 0.82 -0.4
5,213,492 - -0.1
5,213,492 - +1.2
5,213,543 + -2.9
5,213,544 - +1.2
5,213,544 - -0.4
5,213,544 - -1.8
5,213,631 + PFLU_RS23205 0.15 +1.4
5,213,631 + PFLU_RS23205 0.15 -2.1
5,213,632 - PFLU_RS23205 0.15 +0.6
5,213,657 + PFLU_RS23205 0.20 +1.0
5,213,829 + PFLU_RS23205 0.57 -0.6
5,213,829 + PFLU_RS23205 0.57 +1.7
5,213,830 - PFLU_RS23205 0.57 +1.1
5,213,830 - PFLU_RS23205 0.57 +0.2
5,213,830 - PFLU_RS23205 0.57 -0.8
5,213,920 + PFLU_RS23205 0.76 -0.0
5,213,921 - PFLU_RS23205 0.76 +0.8
5,213,941 + PFLU_RS23205 0.81 +2.0
5,213,941 + PFLU_RS23205 0.81 +1.8
5,213,941 + PFLU_RS23205 0.81 +0.2
5,213,941 + PFLU_RS23205 0.81 +1.0
5,213,941 + PFLU_RS23205 0.81 +0.3
5,213,942 - PFLU_RS23205 0.81 -0.2
5,213,942 - PFLU_RS23205 0.81 +0.1
5,213,942 - PFLU_RS23205 0.81 -0.2
5,213,942 - PFLU_RS23205 0.81 +0.8
5,213,942 - PFLU_RS23205 0.81 +0.6
5,213,942 - PFLU_RS23205 0.81 +0.5
5,213,942 - PFLU_RS23205 0.81 +0.0
5,213,942 - PFLU_RS23205 0.81 +0.7
5,213,942 - PFLU_RS23205 0.81 +0.7
5,213,943 + PFLU_RS23205 0.81 +1.4
5,213,943 + PFLU_RS23205 0.81 +1.0
5,213,943 + PFLU_RS23205 0.81 +0.9
5,213,943 + PFLU_RS23205 0.81 +1.2
5,213,943 + PFLU_RS23205 0.81 +1.1
5,213,943 + PFLU_RS23205 0.81 -0.2
5,213,943 + PFLU_RS23205 0.81 +0.6
5,213,944 - PFLU_RS23205 0.81 -0.2
5,213,944 - PFLU_RS23205 0.81 +0.6
5,213,944 - PFLU_RS23205 0.81 +0.4
5,213,944 - PFLU_RS23205 0.81 +1.7
5,213,944 - PFLU_RS23205 0.81 -0.1
5,213,944 - PFLU_RS23205 0.81 +1.4
5,213,973 - PFLU_RS23205 0.87 +0.5
5,213,973 - PFLU_RS23205 0.87 -0.4
5,213,973 - PFLU_RS23205 0.87 +1.3
5,214,040 + -0.2
5,214,041 - +1.4
5,214,096 + -0.1
5,214,097 - +1.0
5,214,097 - -1.0
5,214,097 - -0.3
5,214,097 - +0.4
5,214,097 - -0.4
5,214,102 + +0.5
5,214,102 + -0.4
5,214,102 + -0.1
5,214,103 - +0.5
5,214,103 - -0.7
5,214,103 - -1.0
5,214,103 - +0.6
5,214,141 + +0.7
5,214,141 + +0.9
5,214,142 - +0.7
5,214,277 + PFLU_RS23210 0.20 +1.5
5,214,277 + PFLU_RS23210 0.20 -1.0
5,214,277 + PFLU_RS23210 0.20 +1.1
5,214,277 + PFLU_RS23210 0.20 -0.1
5,214,277 + PFLU_RS23210 0.20 +1.5
5,214,278 - PFLU_RS23210 0.20 +1.1
5,214,460 + PFLU_RS23210 0.44 +0.9
5,214,460 + PFLU_RS23210 0.44 -0.1
5,214,460 + PFLU_RS23210 0.44 -0.0
5,214,460 + PFLU_RS23210 0.44 -0.6
5,214,460 + PFLU_RS23210 0.44 -1.3
5,214,460 + PFLU_RS23210 0.44 -1.9
5,214,460 + PFLU_RS23210 0.44 +0.1
5,214,461 - PFLU_RS23210 0.45 +0.8
5,214,461 - PFLU_RS23210 0.45 +1.8
5,214,461 - PFLU_RS23210 0.45 +0.2
5,214,461 - PFLU_RS23210 0.45 -1.1
5,214,461 - PFLU_RS23210 0.45 -1.8
5,214,461 - PFLU_RS23210 0.45 +0.8
5,214,490 + PFLU_RS23210 0.48 -0.4
5,214,490 + PFLU_RS23210 0.48 -0.1
5,214,491 - PFLU_RS23210 0.49 -0.3
5,214,588 + PFLU_RS23210 0.61 -0.3
5,214,588 + PFLU_RS23210 0.61 +0.0
5,214,589 - PFLU_RS23210 0.62 +0.7
5,214,589 - PFLU_RS23210 0.62 -0.0
5,214,600 + PFLU_RS23210 0.63 -1.0
5,214,639 + PFLU_RS23210 0.68 +0.0
5,214,639 + PFLU_RS23210 0.68 -1.0
5,214,639 + PFLU_RS23210 0.68 -1.7
5,214,639 + PFLU_RS23210 0.68 -0.6
5,214,639 + PFLU_RS23210 0.68 +0.7
5,214,639 + PFLU_RS23210 0.68 +0.6
5,214,639 + PFLU_RS23210 0.68 +0.3
5,214,639 + PFLU_RS23210 0.68 +0.2
5,214,639 + PFLU_RS23210 0.68 -1.0
5,214,639 + PFLU_RS23210 0.68 -0.2
5,214,639 + PFLU_RS23210 0.68 +0.7
5,214,640 - PFLU_RS23210 0.68 -0.3
5,214,640 - PFLU_RS23210 0.68 -0.3
5,214,640 - PFLU_RS23210 0.68 +0.9
5,214,640 - PFLU_RS23210 0.68 -0.0
5,214,640 - PFLU_RS23210 0.68 +1.2
5,214,640 - PFLU_RS23210 0.68 +0.9
5,214,640 - PFLU_RS23210 0.68 +0.6
5,214,670 + PFLU_RS23210 0.72 +1.3
5,214,671 - PFLU_RS23210 0.73 +0.5
5,214,671 - PFLU_RS23210 0.73 +0.2
5,214,671 - PFLU_RS23210 0.73 -0.0
5,214,671 - PFLU_RS23210 0.73 -0.0
5,214,671 - PFLU_RS23210 0.73 -0.0
5,214,730 + PFLU_RS23210 0.80 +0.9
5,214,731 - PFLU_RS23210 0.81 -2.0
5,214,786 + PFLU_RS23210 0.88 +0.7
5,214,786 + PFLU_RS23210 0.88 +0.8
5,214,786 + PFLU_RS23210 0.88 +0.1
5,214,786 + PFLU_RS23210 0.88 -1.0
5,214,786 + PFLU_RS23210 0.88 +0.1
5,214,786 + PFLU_RS23210 0.88 +0.6
5,214,786 + PFLU_RS23210 0.88 +0.2
5,214,786 + PFLU_RS23210 0.88 -2.0
5,214,786 + PFLU_RS23210 0.88 +0.4
5,214,786 + PFLU_RS23210 0.88 +0.3
5,214,786 + PFLU_RS23210 0.88 +0.4
5,214,786 + PFLU_RS23210 0.88 +0.1
5,214,787 - PFLU_RS23210 0.88 +1.2
5,214,787 - PFLU_RS23210 0.88 -1.0
5,214,787 - PFLU_RS23210 0.88 -0.3
5,214,787 - PFLU_RS23210 0.88 +1.0
5,214,787 - PFLU_RS23210 0.88 +1.6
5,214,826 + +0.2
5,214,826 + -2.0
5,214,874 + +1.4
5,214,875 - -0.2
5,214,875 - -1.3
5,214,932 + +0.1

Or see this region's nucleotide sequence