Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23005

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
5,170,816	+		PFLU_RS22995	0.75	+1.0
5,170,816	+		PFLU_RS22995	0.75	+1.3
5,170,816	+		PFLU_RS22995	0.75	-0.3
5,170,816	+		PFLU_RS22995	0.75	+0.9
5,170,817	-		PFLU_RS22995	0.75	-0.2
5,170,817	-		PFLU_RS22995	0.75	+1.2
5,170,817	-		PFLU_RS22995	0.75	+0.5
5,170,817	-		PFLU_RS22995	0.75	+1.3
5,171,041	+				+0.8
5,171,041	+				+0.2
5,171,168	+		PFLU_RS23000	0.18	-0.2
5,171,168	+		PFLU_RS23000	0.18	+0.5
5,171,169	-		PFLU_RS23000	0.18	-0.5
5,171,215	+		PFLU_RS23000	0.26	-1.0
5,171,215	+		PFLU_RS23000	0.26	-0.2
5,171,215	+		PFLU_RS23000	0.26	+1.1
5,171,216	-		PFLU_RS23000	0.26	+0.8
5,171,216	-		PFLU_RS23000	0.26	+0.2
5,171,216	-		PFLU_RS23000	0.26	+0.7
5,171,219	+		PFLU_RS23000	0.27	+0.6
5,171,219	+		PFLU_RS23000	0.27	-1.3
5,171,220	-		PFLU_RS23000	0.27	+0.7
5,171,220	-		PFLU_RS23000	0.27	-1.3
5,171,220	-		PFLU_RS23000	0.27	+0.5
5,171,341	+		PFLU_RS23000	0.49	+0.5
5,171,341	+		PFLU_RS23000	0.49	-2.0
5,171,341	+		PFLU_RS23000	0.49	-1.5
5,171,417	+		PFLU_RS23000	0.62	+1.0
5,171,417	+		PFLU_RS23000	0.62	+0.3
5,171,417	+		PFLU_RS23000	0.62	+1.1
5,171,417	+		PFLU_RS23000	0.62	-0.4
5,171,470	-		PFLU_RS23000	0.72	-0.3
5,171,493	-		PFLU_RS23000	0.76	-0.3
5,171,647	-				-0.2
5,171,647	-				-0.4
5,171,647	-				+0.4
5,171,647	-				+0.7
5,171,680	-				+0.2
5,171,735	+		PFLU_RS23005	0.15	-1.8
5,171,755	+		PFLU_RS23005	0.18	-0.6
5,171,755	+		PFLU_RS23005	0.18	+1.3
5,171,755	+		PFLU_RS23005	0.18	+1.1
5,171,755	+		PFLU_RS23005	0.18	+0.8
5,171,756	-		PFLU_RS23005	0.18	+1.3
5,171,756	-		PFLU_RS23005	0.18	+0.6
5,171,764	+		PFLU_RS23005	0.20	+1.4
5,171,765	-		PFLU_RS23005	0.20	-0.5
5,171,765	-		PFLU_RS23005	0.20	-0.0
5,171,765	-		PFLU_RS23005	0.20	+1.4
5,171,765	-		PFLU_RS23005	0.20	-1.6
5,171,775	+		PFLU_RS23005	0.21	+1.0
5,171,776	-		PFLU_RS23005	0.22	+1.3
5,171,776	-		PFLU_RS23005	0.22	+1.4
5,171,776	-		PFLU_RS23005	0.22	+0.7
5,171,904	+		PFLU_RS23005	0.43	+0.1
5,171,905	-		PFLU_RS23005	0.43	-1.0
5,171,905	-		PFLU_RS23005	0.43	-1.8
5,171,913	+		PFLU_RS23005	0.44	+0.9
5,171,913	+		PFLU_RS23005	0.44	+1.6
5,171,995	-		PFLU_RS23005	0.58	+0.4
5,171,995	-		PFLU_RS23005	0.58	-0.4
5,172,082	+		PFLU_RS23005	0.72	+0.4
5,172,082	+		PFLU_RS23005	0.72	+0.9
5,172,083	-		PFLU_RS23005	0.72	-0.5
5,172,083	-		PFLU_RS23005	0.72	+0.8
5,172,088	+		PFLU_RS23005	0.73	+0.5
5,172,244	+				+0.5
5,172,244	+				+0.6
5,172,244	+				+0.2
5,172,244	+				+0.9
5,172,245	-				-1.8
5,172,245	-				+0.5
5,172,245	-				+1.0
5,172,245	-				+0.6
5,172,245	-				+0.5
5,172,245	-				+1.0
5,172,253	+				-0.5
5,172,253	+				-0.6
5,172,253	+				+0.4
5,172,253	+				-0.1
5,172,253	+				+0.5
5,172,253	+				+0.8
5,172,254	-				+1.3
5,172,254	-				+1.8
5,172,254	-				+0.9
5,172,254	-				-2.7
5,172,321	+				+1.0
5,172,329	+				-0.5
5,172,329	+				+1.0
5,172,329	+				-0.2
5,172,329	+				+0.4
5,172,329	+				-0.7
5,172,329	+				+0.4
5,172,330	-				+1.4
5,172,330	-				-0.0
5,172,330	-				-0.6
5,172,330	-				+0.5
5,172,330	-				+0.8
5,172,330	-				+2.1
5,172,330	-				+0.5
5,172,330	-				-0.6
5,172,330	-				+0.9
5,172,330	-				-1.4
5,172,366	+				-0.1
5,172,434	+				+0.7
5,172,434	+				+0.4
5,172,434	+				-1.3
5,172,434	+				-0.7
5,172,435	-				+0.2
5,172,435	-				+1.4
5,172,435	-				+0.5
5,172,525	+		PFLU_RS23010	0.14	+0.5
5,172,525	+		PFLU_RS23010	0.14	+0.6
5,172,525	+		PFLU_RS23010	0.14	+0.4
5,172,525	+		PFLU_RS23010	0.14	+0.3
5,172,526	-		PFLU_RS23010	0.14	+0.5
5,172,526	-		PFLU_RS23010	0.14	+0.8
5,172,526	-		PFLU_RS23010	0.14	-0.6
5,172,526	-		PFLU_RS23010	0.14	-0.5
5,172,526	-		PFLU_RS23010	0.14	+0.3
5,172,596	-		PFLU_RS23010	0.21	-1.3
5,172,699	+		PFLU_RS23010	0.32	-0.9
5,172,699	+		PFLU_RS23010	0.32	-3.0
5,172,699	+		PFLU_RS23010	0.32	+0.2
5,172,700	-		PFLU_RS23010	0.32	+1.4
5,172,700	-		PFLU_RS23010	0.32	+0.9
5,172,700	-		PFLU_RS23010	0.32	+1.5
5,172,700	-		PFLU_RS23010	0.32	-0.6
5,172,700	-		PFLU_RS23010	0.32	-0.9
5,172,700	-		PFLU_RS23010	0.32	-0.9
5,172,700	-		PFLU_RS23010	0.32	+1.2
5,172,700	-		PFLU_RS23010	0.32	-0.6
5,172,705	+		PFLU_RS23010	0.33	-0.6
5,172,705	+		PFLU_RS23010	0.33	+1.0
5,172,706	-		PFLU_RS23010	0.33	+1.8
5,172,706	-		PFLU_RS23010	0.33	-2.0
5,172,706	-		PFLU_RS23010	0.33	-1.5
5,172,706	-		PFLU_RS23010	0.33	-2.9
5,172,706	-		PFLU_RS23010	0.33	+0.3
5,172,706	-		PFLU_RS23010	0.33	+0.0
5,172,706	-		PFLU_RS23010	0.33	-1.1
5,172,837	+		PFLU_RS23010	0.46	-0.5
5,172,837	+		PFLU_RS23010	0.46	-0.3
5,172,838	-		PFLU_RS23010	0.46	+0.7
5,172,838	-		PFLU_RS23010	0.46	-0.2
5,172,941	+		PFLU_RS23010	0.57	+0.1
5,172,941	+		PFLU_RS23010	0.57	-0.9
5,172,941	+		PFLU_RS23010	0.57	-0.0
5,172,941	+		PFLU_RS23010	0.57	-1.6
5,172,941	+		PFLU_RS23010	0.57	+0.5
5,172,942	-		PFLU_RS23010	0.57	+1.5
5,172,942	-		PFLU_RS23010	0.57	-1.6
5,172,942	-		PFLU_RS23010	0.57	-0.3
5,172,942	-		PFLU_RS23010	0.57	-1.0
5,172,942	-		PFLU_RS23010	0.57	+1.3
5,172,942	-		PFLU_RS23010	0.57	+0.8
5,172,942	-		PFLU_RS23010	0.57	+0.7
5,173,195	+		PFLU_RS23010	0.83	-0.8
5,173,195	+		PFLU_RS23010	0.83	+0.8
5,173,195	+		PFLU_RS23010	0.83	-1.1
5,173,196	-		PFLU_RS23010	0.83	-0.8
5,173,196	-		PFLU_RS23010	0.83	-2.5
5,173,200	+		PFLU_RS23010	0.84	+0.3
5,173,200	+		PFLU_RS23010	0.84	-0.0
5,173,201	-		PFLU_RS23010	0.84	+0.3
5,173,201	-		PFLU_RS23010	0.84	-1.2
5,173,201	-		PFLU_RS23010	0.84	+2.4
5,173,201	-		PFLU_RS23010	0.84	-1.0