Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22110

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS22105 and PFLU_RS31770 are separated by 34 nucleotidesPFLU_RS31770 and PFLU_RS22110 are separated by 105 nucleotidesPFLU_RS22110 and PFLU_RS22115 are separated by 6 nucleotides PFLU_RS22105: PFLU_RS22105 - cysteine synthase CysM, at 4,974,173 to 4,975,075 _RS22105 PFLU_RS31770: PFLU_RS31770 - DTW domain-containing protein, at 4,975,110 to 4,975,202 _RS31770 PFLU_RS22110: PFLU_RS22110 - DTW domain-containing protein, at 4,975,308 to 4,975,913 _RS22110 PFLU_RS22115: PFLU_RS22115 - LysR family transcriptional regulator, at 4,975,920 to 4,976,813 _RS22115 Position (kb) 4975 4976Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4974.402 kb on + strand, within PFLU_RS22105at 4974.402 kb on + strand, within PFLU_RS22105at 4974.402 kb on + strand, within PFLU_RS22105at 4974.402 kb on + strand, within PFLU_RS22105at 4974.403 kb on - strand, within PFLU_RS22105at 4974.403 kb on - strand, within PFLU_RS22105at 4974.403 kb on - strand, within PFLU_RS22105at 4974.417 kb on + strand, within PFLU_RS22105at 4974.418 kb on - strand, within PFLU_RS22105at 4974.418 kb on - strand, within PFLU_RS22105at 4974.418 kb on - strand, within PFLU_RS22105at 4974.612 kb on + strand, within PFLU_RS22105at 4974.612 kb on + strand, within PFLU_RS22105at 4974.612 kb on + strand, within PFLU_RS22105at 4974.613 kb on - strand, within PFLU_RS22105at 4974.613 kb on - strand, within PFLU_RS22105at 4974.613 kb on - strand, within PFLU_RS22105at 4974.613 kb on - strand, within PFLU_RS22105at 4974.747 kb on + strand, within PFLU_RS22105at 4974.810 kb on + strand, within PFLU_RS22105at 4974.810 kb on + strand, within PFLU_RS22105at 4974.811 kb on - strand, within PFLU_RS22105at 4974.988 kb on + strandat 4974.988 kb on + strandat 4975.057 kb on + strandat 4975.057 kb on + strandat 4975.057 kb on + strandat 4975.057 kb on + strandat 4975.057 kb on + strandat 4975.057 kb on + strandat 4975.057 kb on + strandat 4975.057 kb on + strandat 4975.057 kb on + strandat 4975.057 kb on + strandat 4975.058 kb on - strandat 4975.058 kb on - strandat 4975.058 kb on - strandat 4975.058 kb on - strandat 4975.058 kb on - strandat 4975.058 kb on - strandat 4975.062 kb on + strandat 4975.080 kb on + strandat 4975.081 kb on - strandat 4975.136 kb on + strand, within PFLU_RS31770at 4975.157 kb on + strand, within PFLU_RS31770at 4975.165 kb on - strand, within PFLU_RS31770at 4975.165 kb on - strand, within PFLU_RS31770at 4975.165 kb on - strand, within PFLU_RS31770at 4975.166 kb on + strand, within PFLU_RS31770at 4975.166 kb on + strand, within PFLU_RS31770at 4975.167 kb on - strand, within PFLU_RS31770at 4975.172 kb on + strand, within PFLU_RS31770at 4975.310 kb on - strandat 4975.636 kb on + strand, within PFLU_RS22110at 4975.636 kb on + strand, within PFLU_RS22110at 4975.636 kb on + strand, within PFLU_RS22110at 4975.636 kb on + strand, within PFLU_RS22110at 4975.636 kb on + strand, within PFLU_RS22110at 4975.636 kb on + strand, within PFLU_RS22110at 4975.636 kb on + strand, within PFLU_RS22110at 4975.636 kb on + strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.637 kb on - strand, within PFLU_RS22110at 4975.704 kb on + strand, within PFLU_RS22110at 4975.705 kb on - strand, within PFLU_RS22110at 4975.705 kb on - strand, within PFLU_RS22110at 4975.737 kb on + strand, within PFLU_RS22110at 4975.737 kb on + strand, within PFLU_RS22110at 4975.737 kb on + strand, within PFLU_RS22110at 4975.738 kb on - strand, within PFLU_RS22110at 4975.782 kb on - strand, within PFLU_RS22110at 4975.782 kb on - strand, within PFLU_RS22110at 4975.918 kb on + strandat 4975.918 kb on + strandat 4975.918 kb on + strandat 4975.919 kb on - strandat 4976.043 kb on + strand, within PFLU_RS22115at 4976.044 kb on - strand, within PFLU_RS22115at 4976.080 kb on + strand, within PFLU_RS22115at 4976.081 kb on - strand, within PFLU_RS22115at 4976.104 kb on + strand, within PFLU_RS22115at 4976.104 kb on + strand, within PFLU_RS22115at 4976.104 kb on + strand, within PFLU_RS22115at 4976.104 kb on + strand, within PFLU_RS22115at 4976.104 kb on + strand, within PFLU_RS22115at 4976.104 kb on + strand, within PFLU_RS22115at 4976.105 kb on - strand, within PFLU_RS22115at 4976.105 kb on - strand, within PFLU_RS22115at 4976.105 kb on - strand, within PFLU_RS22115at 4976.105 kb on - strand, within PFLU_RS22115at 4976.141 kb on + strand, within PFLU_RS22115at 4976.141 kb on + strand, within PFLU_RS22115at 4976.141 kb on + strand, within PFLU_RS22115at 4976.141 kb on + strand, within PFLU_RS22115at 4976.141 kb on + strand, within PFLU_RS22115at 4976.141 kb on + strand, within PFLU_RS22115at 4976.141 kb on + strand, within PFLU_RS22115at 4976.287 kb on + strand, within PFLU_RS22115at 4976.287 kb on + strand, within PFLU_RS22115at 4976.287 kb on + strand, within PFLU_RS22115at 4976.287 kb on + strand, within PFLU_RS22115at 4976.287 kb on + strand, within PFLU_RS22115at 4976.288 kb on - strand, within PFLU_RS22115at 4976.288 kb on - strand, within PFLU_RS22115at 4976.288 kb on - strand, within PFLU_RS22115at 4976.288 kb on - strand, within PFLU_RS22115at 4976.320 kb on + strand, within PFLU_RS22115at 4976.320 kb on + strand, within PFLU_RS22115at 4976.320 kb on + strand, within PFLU_RS22115at 4976.320 kb on + strand, within PFLU_RS22115at 4976.320 kb on + strand, within PFLU_RS22115at 4976.320 kb on + strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.321 kb on - strand, within PFLU_RS22115at 4976.453 kb on - strand, within PFLU_RS22115at 4976.453 kb on - strand, within PFLU_RS22115at 4976.453 kb on - strand, within PFLU_RS22115at 4976.498 kb on + strand, within PFLU_RS22115at 4976.499 kb on - strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.695 kb on + strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.696 kb on - strand, within PFLU_RS22115at 4976.837 kb on - strandat 4976.837 kb on - strandat 4976.843 kb on - strandat 4976.843 kb on - strandat 4976.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,974,402 + PFLU_RS22105 0.25 -2.6
4,974,402 + PFLU_RS22105 0.25 -3.3
4,974,402 + PFLU_RS22105 0.25 -2.6
4,974,402 + PFLU_RS22105 0.25 -2.1
4,974,403 - PFLU_RS22105 0.25 -1.9
4,974,403 - PFLU_RS22105 0.25 -2.5
4,974,403 - PFLU_RS22105 0.25 -1.6
4,974,417 + PFLU_RS22105 0.27 -2.3
4,974,418 - PFLU_RS22105 0.27 -1.9
4,974,418 - PFLU_RS22105 0.27 +0.4
4,974,418 - PFLU_RS22105 0.27 -1.1
4,974,612 + PFLU_RS22105 0.49 -3.3
4,974,612 + PFLU_RS22105 0.49 -2.4
4,974,612 + PFLU_RS22105 0.49 -1.9
4,974,613 - PFLU_RS22105 0.49 -2.1
4,974,613 - PFLU_RS22105 0.49 -2.0
4,974,613 - PFLU_RS22105 0.49 -0.1
4,974,613 - PFLU_RS22105 0.49 -3.1
4,974,747 + PFLU_RS22105 0.64 -0.6
4,974,810 + PFLU_RS22105 0.71 -3.3
4,974,810 + PFLU_RS22105 0.71 -3.2
4,974,811 - PFLU_RS22105 0.71 -0.1
4,974,988 + -2.0
4,974,988 + -2.1
4,975,057 + -3.3
4,975,057 + -1.7
4,975,057 + -0.9
4,975,057 + -2.6
4,975,057 + -2.4
4,975,057 + -2.7
4,975,057 + -2.3
4,975,057 + -3.0
4,975,057 + -1.9
4,975,057 + -1.7
4,975,058 - -2.3
4,975,058 - -3.8
4,975,058 - -2.0
4,975,058 - -1.3
4,975,058 - -1.7
4,975,058 - -1.8
4,975,062 + -0.1
4,975,080 + -0.6
4,975,081 - -2.8
4,975,136 + PFLU_RS31770 0.28 -2.4
4,975,157 + PFLU_RS31770 0.51 -0.3
4,975,165 - PFLU_RS31770 0.59 +0.4
4,975,165 - PFLU_RS31770 0.59 +0.3
4,975,165 - PFLU_RS31770 0.59 +1.4
4,975,166 + PFLU_RS31770 0.60 -0.1
4,975,166 + PFLU_RS31770 0.60 +0.3
4,975,167 - PFLU_RS31770 0.61 +0.5
4,975,172 + PFLU_RS31770 0.67 +1.7
4,975,310 - +0.2
4,975,636 + PFLU_RS22110 0.54 -0.7
4,975,636 + PFLU_RS22110 0.54 +1.3
4,975,636 + PFLU_RS22110 0.54 -1.2
4,975,636 + PFLU_RS22110 0.54 +0.9
4,975,636 + PFLU_RS22110 0.54 -0.3
4,975,636 + PFLU_RS22110 0.54 +1.3
4,975,636 + PFLU_RS22110 0.54 -2.2
4,975,636 + PFLU_RS22110 0.54 -1.0
4,975,637 - PFLU_RS22110 0.54 -0.6
4,975,637 - PFLU_RS22110 0.54 +0.4
4,975,637 - PFLU_RS22110 0.54 -0.3
4,975,637 - PFLU_RS22110 0.54 -0.2
4,975,637 - PFLU_RS22110 0.54 -0.0
4,975,637 - PFLU_RS22110 0.54 +0.3
4,975,637 - PFLU_RS22110 0.54 -0.3
4,975,637 - PFLU_RS22110 0.54 -2.1
4,975,637 - PFLU_RS22110 0.54 +0.8
4,975,637 - PFLU_RS22110 0.54 -1.4
4,975,637 - PFLU_RS22110 0.54 +0.4
4,975,637 - PFLU_RS22110 0.54 -0.4
4,975,637 - PFLU_RS22110 0.54 -0.3
4,975,637 - PFLU_RS22110 0.54 -0.2
4,975,637 - PFLU_RS22110 0.54 +0.9
4,975,637 - PFLU_RS22110 0.54 +0.3
4,975,704 + PFLU_RS22110 0.65 -0.2
4,975,705 - PFLU_RS22110 0.66 -1.4
4,975,705 - PFLU_RS22110 0.66 +0.6
4,975,737 + PFLU_RS22110 0.71 -0.9
4,975,737 + PFLU_RS22110 0.71 +0.9
4,975,737 + PFLU_RS22110 0.71 +0.4
4,975,738 - PFLU_RS22110 0.71 +0.5
4,975,782 - PFLU_RS22110 0.78 +0.2
4,975,782 - PFLU_RS22110 0.78 -0.5
4,975,918 + +0.7
4,975,918 + +0.7
4,975,918 + +1.2
4,975,919 - -0.6
4,976,043 + PFLU_RS22115 0.14 -0.5
4,976,044 - PFLU_RS22115 0.14 +1.3
4,976,080 + PFLU_RS22115 0.18 +1.2
4,976,081 - PFLU_RS22115 0.18 +0.2
4,976,104 + PFLU_RS22115 0.21 +0.3
4,976,104 + PFLU_RS22115 0.21 +0.4
4,976,104 + PFLU_RS22115 0.21 +1.2
4,976,104 + PFLU_RS22115 0.21 +0.1
4,976,104 + PFLU_RS22115 0.21 +0.4
4,976,104 + PFLU_RS22115 0.21 +0.4
4,976,105 - PFLU_RS22115 0.21 -0.1
4,976,105 - PFLU_RS22115 0.21 +0.8
4,976,105 - PFLU_RS22115 0.21 +0.4
4,976,105 - PFLU_RS22115 0.21 +0.0
4,976,141 + PFLU_RS22115 0.25 +0.4
4,976,141 + PFLU_RS22115 0.25 +1.7
4,976,141 + PFLU_RS22115 0.25 +0.0
4,976,141 + PFLU_RS22115 0.25 +0.1
4,976,141 + PFLU_RS22115 0.25 +0.5
4,976,141 + PFLU_RS22115 0.25 -1.9
4,976,141 + PFLU_RS22115 0.25 -0.3
4,976,287 + PFLU_RS22115 0.41 -1.5
4,976,287 + PFLU_RS22115 0.41 -0.7
4,976,287 + PFLU_RS22115 0.41 +0.5
4,976,287 + PFLU_RS22115 0.41 +0.3
4,976,287 + PFLU_RS22115 0.41 +0.4
4,976,288 - PFLU_RS22115 0.41 -1.1
4,976,288 - PFLU_RS22115 0.41 -1.2
4,976,288 - PFLU_RS22115 0.41 -1.4
4,976,288 - PFLU_RS22115 0.41 +0.5
4,976,320 + PFLU_RS22115 0.45 -0.3
4,976,320 + PFLU_RS22115 0.45 -0.6
4,976,320 + PFLU_RS22115 0.45 +1.6
4,976,320 + PFLU_RS22115 0.45 -0.1
4,976,320 + PFLU_RS22115 0.45 -0.7
4,976,320 + PFLU_RS22115 0.45 -1.0
4,976,321 - PFLU_RS22115 0.45 -2.0
4,976,321 - PFLU_RS22115 0.45 -0.5
4,976,321 - PFLU_RS22115 0.45 +0.0
4,976,321 - PFLU_RS22115 0.45 +0.3
4,976,321 - PFLU_RS22115 0.45 -1.5
4,976,321 - PFLU_RS22115 0.45 -0.2
4,976,321 - PFLU_RS22115 0.45 +1.0
4,976,321 - PFLU_RS22115 0.45 +0.6
4,976,321 - PFLU_RS22115 0.45 -0.0
4,976,321 - PFLU_RS22115 0.45 -0.3
4,976,321 - PFLU_RS22115 0.45 -0.1
4,976,321 - PFLU_RS22115 0.45 -0.0
4,976,453 - PFLU_RS22115 0.60 -1.6
4,976,453 - PFLU_RS22115 0.60 -0.2
4,976,453 - PFLU_RS22115 0.60 +0.5
4,976,498 + PFLU_RS22115 0.65 -0.7
4,976,499 - PFLU_RS22115 0.65 +0.2
4,976,695 + PFLU_RS22115 0.87 -0.9
4,976,695 + PFLU_RS22115 0.87 +1.4
4,976,695 + PFLU_RS22115 0.87 +0.8
4,976,695 + PFLU_RS22115 0.87 -0.1
4,976,695 + PFLU_RS22115 0.87 -2.7
4,976,695 + PFLU_RS22115 0.87 +1.0
4,976,695 + PFLU_RS22115 0.87 +1.2
4,976,695 + PFLU_RS22115 0.87 +0.1
4,976,695 + PFLU_RS22115 0.87 +0.5
4,976,695 + PFLU_RS22115 0.87 -0.0
4,976,695 + PFLU_RS22115 0.87 -0.1
4,976,695 + PFLU_RS22115 0.87 +0.9
4,976,695 + PFLU_RS22115 0.87 +1.3
4,976,695 + PFLU_RS22115 0.87 +1.4
4,976,695 + PFLU_RS22115 0.87 +0.5
4,976,695 + PFLU_RS22115 0.87 +0.4
4,976,695 + PFLU_RS22115 0.87 +0.1
4,976,695 + PFLU_RS22115 0.87 -0.4
4,976,695 + PFLU_RS22115 0.87 +0.6
4,976,695 + PFLU_RS22115 0.87 -0.2
4,976,695 + PFLU_RS22115 0.87 +0.4
4,976,696 - PFLU_RS22115 0.87 -0.3
4,976,696 - PFLU_RS22115 0.87 -0.6
4,976,696 - PFLU_RS22115 0.87 +0.0
4,976,696 - PFLU_RS22115 0.87 -1.6
4,976,696 - PFLU_RS22115 0.87 -1.0
4,976,696 - PFLU_RS22115 0.87 +1.3
4,976,696 - PFLU_RS22115 0.87 -1.0
4,976,696 - PFLU_RS22115 0.87 -0.8
4,976,696 - PFLU_RS22115 0.87 +0.8
4,976,696 - PFLU_RS22115 0.87 +0.8
4,976,696 - PFLU_RS22115 0.87 +0.9
4,976,696 - PFLU_RS22115 0.87 -1.9
4,976,696 - PFLU_RS22115 0.87 -0.9
4,976,696 - PFLU_RS22115 0.87 -0.1
4,976,696 - PFLU_RS22115 0.87 +0.7
4,976,837 - -0.3
4,976,837 - +0.1
4,976,843 - +2.0
4,976,843 - -0.4
4,976,843 - +0.3

Or see this region's nucleotide sequence