Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20700

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
4,660,367	+		PFLU_RS20695	0.20	+1.1
4,660,368	-		PFLU_RS20695	0.20	-0.6
4,660,398	+		PFLU_RS20695	0.23	+0.1
4,660,398	+		PFLU_RS20695	0.23	-0.2
4,660,399	-		PFLU_RS20695	0.23	+0.2
4,660,421	+		PFLU_RS20695	0.25	+0.8
4,660,421	+		PFLU_RS20695	0.25	+1.0
4,660,421	+		PFLU_RS20695	0.25	+0.2
4,660,422	-		PFLU_RS20695	0.25	+1.0
4,660,596	-		PFLU_RS20695	0.41	+0.3
4,660,661	+		PFLU_RS20695	0.48	+0.5
4,660,661	+		PFLU_RS20695	0.48	-0.1
4,660,661	+		PFLU_RS20695	0.48	+1.2
4,660,661	+		PFLU_RS20695	0.48	-0.2
4,660,661	+		PFLU_RS20695	0.48	-0.6
4,660,661	+		PFLU_RS20695	0.48	+0.2
4,660,661	+		PFLU_RS20695	0.48	+1.8
4,660,661	+		PFLU_RS20695	0.48	-0.2
4,660,662	-		PFLU_RS20695	0.48	+1.3
4,660,662	-		PFLU_RS20695	0.48	-0.9
4,660,662	-		PFLU_RS20695	0.48	+0.1
4,660,802	+		PFLU_RS20695	0.61	+1.6
4,660,802	+		PFLU_RS20695	0.61	+1.0
4,660,802	+		PFLU_RS20695	0.61	+1.6
4,660,802	+		PFLU_RS20695	0.61	-0.4
4,660,802	+		PFLU_RS20695	0.61	+1.1
4,660,803	-		PFLU_RS20695	0.61	-1.2
4,660,803	-		PFLU_RS20695	0.61	+0.4
4,660,803	-		PFLU_RS20695	0.61	+0.3
4,660,860	+		PFLU_RS20695	0.66	+0.0
4,660,860	+		PFLU_RS20695	0.66	+0.7
4,660,861	-		PFLU_RS20695	0.66	+0.5
4,660,910	+		PFLU_RS20695	0.71	-1.2
4,660,910	+		PFLU_RS20695	0.71	+1.1
4,660,911	-		PFLU_RS20695	0.71	+0.6
4,660,911	-		PFLU_RS20695	0.71	-1.9
4,660,911	-		PFLU_RS20695	0.71	+0.5
4,660,911	-		PFLU_RS20695	0.71	-0.4
4,660,911	-		PFLU_RS20695	0.71	+0.2
4,661,000	+		PFLU_RS20695	0.79	+0.2
4,661,001	-		PFLU_RS20695	0.80	-0.6
4,661,145	+				-0.2
4,661,146	-				+0.3
4,661,146	-				+0.8
4,661,168	+				+0.3
4,661,168	+				+0.7
4,661,168	+				+1.2
4,661,168	+				+1.3
4,661,168	+				+0.7
4,661,168	+				+0.1
4,661,169	-				-0.4
4,661,169	-				+1.6
4,661,235	+				-0.6
4,661,235	+				-0.7
4,661,236	-				+0.4
4,661,236	-				+0.6
4,661,304	+				-1.0
4,661,309	+				-0.9
4,661,309	+				-1.0
4,661,309	+				+0.7
4,661,309	+				+0.7
4,661,309	+				-0.7
4,661,309	+				+0.3
4,661,309	+				-0.9
4,661,309	+				-1.7
4,661,309	+				-0.5
4,661,309	+				-0.6
4,661,309	+				-0.7
4,661,309	+				-0.6
4,661,309	+				+0.8
4,661,309	+				-2.7
4,661,309	+				-0.1
4,661,309	+				-0.7
4,661,310	-				-0.1
4,661,310	-				-0.8
4,661,310	-				-0.9
4,661,310	-				-1.4
4,661,310	-				-0.1
4,661,310	-				+0.2
4,661,310	-				-0.6
4,661,310	-				+0.2
4,661,310	-				-0.7
4,661,310	-				-0.7
4,661,310	-				-0.9
4,661,310	-				+1.6
4,661,310	-				+0.8
4,661,310	-				-2.7
4,661,310	-				+0.6
4,661,310	-				-0.6
4,661,310	-				+1.5
4,661,342	-				+0.2
4,661,342	-				+0.0
4,661,587	-		PFLU_RS20700	0.26	+0.5
4,661,587	-		PFLU_RS20700	0.26	-1.4
4,661,634	+		PFLU_RS20700	0.31	+0.8
4,661,634	+		PFLU_RS20700	0.31	+1.4
4,661,634	+		PFLU_RS20700	0.31	+1.7
4,661,634	+		PFLU_RS20700	0.31	+2.4
4,661,634	+		PFLU_RS20700	0.31	-1.6
4,661,634	+		PFLU_RS20700	0.31	+2.2
4,661,634	+		PFLU_RS20700	0.31	+1.2
4,661,635	-		PFLU_RS20700	0.31	+1.4
4,661,635	-		PFLU_RS20700	0.31	+0.6
4,661,635	-		PFLU_RS20700	0.31	+0.5
4,661,638	+		PFLU_RS20700	0.31	+1.4
4,661,638	+		PFLU_RS20700	0.31	+0.9
4,661,638	+		PFLU_RS20700	0.31	-0.3
4,661,638	+		PFLU_RS20700	0.31	+0.6
4,661,638	+		PFLU_RS20700	0.31	+1.7
4,661,639	-		PFLU_RS20700	0.32	+0.8
4,661,639	-		PFLU_RS20700	0.32	+0.1
4,661,639	-		PFLU_RS20700	0.32	+0.6
4,661,700	+		PFLU_RS20700	0.38	+0.4
4,661,701	-		PFLU_RS20700	0.38	+0.0
4,661,745	+		PFLU_RS20700	0.43	-0.6
4,661,745	+		PFLU_RS20700	0.43	+0.3
4,661,813	+		PFLU_RS20700	0.50	+0.3
4,661,904	+		PFLU_RS20700	0.60	+1.4
4,661,904	+		PFLU_RS20700	0.60	-1.6
4,661,905	-		PFLU_RS20700	0.60	+0.3
4,661,905	-		PFLU_RS20700	0.60	-0.3
4,661,905	-		PFLU_RS20700	0.60	+0.4
4,661,905	-		PFLU_RS20700	0.60	+2.3
4,661,905	-		PFLU_RS20700	0.60	+1.0
4,661,905	-		PFLU_RS20700	0.60	-1.1
4,661,905	-		PFLU_RS20700	0.60	+1.2
4,661,905	-		PFLU_RS20700	0.60	-0.3
4,662,066	+		PFLU_RS20700	0.77	+0.9
4,662,066	+		PFLU_RS20700	0.77	+0.8
4,662,066	+		PFLU_RS20700	0.77	-0.4
4,662,066	+		PFLU_RS20700	0.77	+0.5
4,662,066	+		PFLU_RS20700	0.77	-1.2
4,662,067	-		PFLU_RS20700	0.78	+0.6
4,662,067	-		PFLU_RS20700	0.78	+0.4
4,662,067	-		PFLU_RS20700	0.78	+1.2
4,662,130	-		PFLU_RS20700	0.84	+2.0
4,662,192	+				-0.2
4,662,193	-				+0.9
4,662,247	+				+1.4
4,662,247	+				+1.0
4,662,247	+				+1.4
4,662,247	+				-3.0
4,662,247	+				+1.8
4,662,247	+				+0.7
4,662,248	-				+0.4
4,662,248	-				+1.6
4,662,248	-				+0.1
4,662,248	-				-0.9
4,662,273	+				-0.4
4,662,274	-				-2.6
4,662,274	-				+0.3
4,662,274	-				-0.5
4,662,284	+				+0.8
4,662,284	+				+1.1
4,662,284	+				-0.3
4,662,284	+				+1.3
4,662,284	+				+0.3
4,662,285	-				+0.0
4,662,285	-				-0.6
4,662,285	-				+0.3
4,662,285	-				-1.3
4,662,285	-				-0.9
4,662,285	-				-0.2
4,662,285	-				-0.5
4,662,363	-				-0.1
4,662,618	-				+0.4
4,662,621	+				+0.5
4,662,710	+				-0.6
4,662,710	+				-1.2
4,662,711	-				+0.2
4,662,748	+				-0.4
4,662,748	+				+0.8
4,662,749	-				-0.7
4,662,749	-				+0.6
4,662,817	+		PFLU_RS20705	0.19	-0.1
4,662,817	+		PFLU_RS20705	0.19	-0.1
4,662,818	-		PFLU_RS20705	0.19	-0.2
4,662,820	+		PFLU_RS20705	0.20	-0.2
4,662,820	+		PFLU_RS20705	0.20	+1.1
4,662,820	+		PFLU_RS20705	0.20	+0.5
4,662,821	-		PFLU_RS20705	0.20	-0.6
4,662,821	-		PFLU_RS20705	0.20	-1.0
4,662,821	-		PFLU_RS20705	0.20	+1.0
4,662,821	-		PFLU_RS20705	0.20	+2.8
4,662,821	-		PFLU_RS20705	0.20	-0.2
4,662,930	-		PFLU_RS20705	0.45	+0.3
4,663,075	+		PFLU_RS20705	0.77	+0.8
4,663,075	+		PFLU_RS20705	0.77	-0.6
4,663,076	-		PFLU_RS20705	0.77	-0.7
4,663,076	-		PFLU_RS20705	0.77	-1.5
4,663,116	-		PFLU_RS20705	0.86	-1.6
4,663,116	-		PFLU_RS20705	0.86	-0.0
4,663,116	-		PFLU_RS20705	0.86	-0.2
4,663,167	+				-3.0
4,663,167	+				+0.3
4,663,168	-				+0.0
4,663,168	-				-2.0
4,663,180	+				+1.1
4,663,180	+				+0.8
4,663,181	-				+0.6
4,663,181	-				+1.6
4,663,181	-				-0.4
4,663,181	-				-0.9
4,663,181	-				+0.1
4,663,193	-				-0.9
4,663,219	-				-0.2
4,663,219	-				+1.2
4,663,219	-				+0.3