Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS17845

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
4,051,491	+		PFLU_RS17840	0.45	-0.2
4,051,491	+		PFLU_RS17840	0.45	+0.8
4,051,491	+		PFLU_RS17840	0.45	-0.5
4,051,491	+		PFLU_RS17840	0.45	-1.2
4,051,491	+		PFLU_RS17840	0.45	+0.3
4,051,492	-		PFLU_RS17840	0.45	-0.0
4,051,536	+		PFLU_RS17840	0.48	-0.5
4,051,536	+		PFLU_RS17840	0.48	-0.1
4,051,537	-		PFLU_RS17840	0.48	+0.2
4,051,943	+		PFLU_RS17840	0.77	+0.7
4,051,992	-		PFLU_RS17840	0.81	-1.3
4,052,041	-		PFLU_RS17840	0.84	-0.7
4,052,061	+		PFLU_RS17840	0.86	-0.5
4,052,061	+		PFLU_RS17840	0.86	+0.3
4,052,061	+		PFLU_RS17840	0.86	+2.5
4,052,062	-		PFLU_RS17840	0.86	+0.3
4,052,062	-		PFLU_RS17840	0.86	+0.0
4,052,062	-		PFLU_RS17840	0.86	+0.1
4,052,062	-		PFLU_RS17840	0.86	-1.4
4,052,062	-		PFLU_RS17840	0.86	-0.2
4,052,062	-		PFLU_RS17840	0.86	-0.0
4,052,062	-		PFLU_RS17840	0.86	-0.3
4,052,062	-		PFLU_RS17840	0.86	+0.1
4,052,062	-		PFLU_RS17840	0.86	+0.4
4,052,178	+				-0.1
4,052,178	+				+0.4
4,052,179	-				-0.1
4,052,179	-				-1.8
4,052,179	-				+0.2
4,052,186	+				-0.0
4,052,186	+				+1.9
4,052,187	-				-0.1
4,052,235	-				+0.8
4,052,235	-				-0.2
4,052,242	+				-1.2
4,052,242	+				-3.4
4,052,253	-				-0.7
4,052,256	+				+0.5
4,052,256	+				+0.6
4,052,256	+				-0.1
4,052,256	+				-0.2
4,052,256	+				-0.7
4,052,308	-				-0.5
4,052,374	-				-0.8
4,052,374	-				+0.7
4,052,389	-				-0.6
4,052,443	+				-0.5
4,052,470	+				-0.1
4,052,470	+				+0.0
4,052,623	+				-0.0
4,052,623	+				-0.6
4,052,700	+		PFLU_RS17845	0.12	-1.4
4,052,700	+		PFLU_RS17845	0.12	-0.0
4,052,700	+		PFLU_RS17845	0.12	-0.2
4,052,700	+		PFLU_RS17845	0.12	-0.4
4,052,700	+		PFLU_RS17845	0.12	-0.8
4,052,701	-		PFLU_RS17845	0.12	-0.9
4,052,701	-		PFLU_RS17845	0.12	+1.2
4,052,701	-		PFLU_RS17845	0.12	+0.1
4,052,701	-		PFLU_RS17845	0.12	-0.1
4,052,701	-		PFLU_RS17845	0.12	+1.4
4,052,701	-		PFLU_RS17845	0.12	-0.4
4,052,805	-		PFLU_RS17845	0.17	-0.5
4,052,881	+		PFLU_RS17845	0.21	-0.0
4,052,881	+		PFLU_RS17845	0.21	+1.2
4,052,881	+		PFLU_RS17845	0.21	+0.3
4,052,881	+		PFLU_RS17845	0.21	-0.2
4,052,881	+		PFLU_RS17845	0.21	+1.1
4,052,882	-		PFLU_RS17845	0.21	-2.2
4,052,882	-		PFLU_RS17845	0.21	-0.0
4,052,953	+		PFLU_RS17845	0.25	-2.8
4,052,953	+		PFLU_RS17845	0.25	-0.3
4,052,953	+		PFLU_RS17845	0.25	-1.5
4,052,953	+		PFLU_RS17845	0.25	-1.7
4,052,953	+		PFLU_RS17845	0.25	+0.2
4,052,953	+		PFLU_RS17845	0.25	+0.6
4,052,954	-		PFLU_RS17845	0.25	-0.7
4,052,954	-		PFLU_RS17845	0.25	-0.1
4,052,954	-		PFLU_RS17845	0.25	+0.5
4,052,977	+		PFLU_RS17845	0.26	+0.0
4,052,989	+		PFLU_RS17845	0.26	+0.6
4,052,990	-		PFLU_RS17845	0.26	-0.4
4,053,061	+		PFLU_RS17845	0.30	+0.4
4,053,061	+		PFLU_RS17845	0.30	-0.1
4,053,061	+		PFLU_RS17845	0.30	-0.7
4,053,061	+		PFLU_RS17845	0.30	-1.2
4,053,062	-		PFLU_RS17845	0.30	-0.0
4,053,062	-		PFLU_RS17845	0.30	+0.7
4,053,062	-		PFLU_RS17845	0.30	+0.4
4,053,109	+		PFLU_RS17845	0.32	-0.5
4,053,110	-		PFLU_RS17845	0.32	-0.8
4,053,110	-		PFLU_RS17845	0.32	-0.2
4,053,110	-		PFLU_RS17845	0.32	+1.9
4,053,110	-		PFLU_RS17845	0.32	-0.0
4,053,113	+		PFLU_RS17845	0.32	-0.0
4,053,113	+		PFLU_RS17845	0.32	+1.5
4,053,113	+		PFLU_RS17845	0.32	-0.1
4,053,113	+		PFLU_RS17845	0.32	+1.1
4,053,113	+		PFLU_RS17845	0.32	-0.8
4,053,125	-		PFLU_RS17845	0.33	+0.3
4,053,125	-		PFLU_RS17845	0.33	-0.4
4,053,125	-		PFLU_RS17845	0.33	-0.0
4,053,125	-		PFLU_RS17845	0.33	-1.5
4,053,125	-		PFLU_RS17845	0.33	-1.4
4,053,132	+		PFLU_RS17845	0.33	-0.9
4,053,132	+		PFLU_RS17845	0.33	+0.1
4,053,250	+		PFLU_RS17845	0.39	-1.5
4,053,268	+		PFLU_RS17845	0.40	-1.2
4,053,295	+		PFLU_RS17845	0.41	+1.0
4,053,295	+		PFLU_RS17845	0.41	+0.7
4,053,295	+		PFLU_RS17845	0.41	+0.4
4,053,296	-		PFLU_RS17845	0.41	+1.5
4,053,520	+		PFLU_RS17845	0.52	+0.3
4,053,526	+		PFLU_RS17845	0.52	+1.7
4,053,527	-		PFLU_RS17845	0.52	+0.5
4,053,544	+		PFLU_RS17845	0.53	-0.7
4,053,544	+		PFLU_RS17845	0.53	+0.5
4,053,545	-		PFLU_RS17845	0.53	+1.4
4,053,545	-		PFLU_RS17845	0.53	+0.2
4,053,691	+		PFLU_RS17845	0.60	-0.4
4,053,691	+		PFLU_RS17845	0.60	+0.1
4,053,692	-		PFLU_RS17845	0.60	+0.5
4,053,692	-		PFLU_RS17845	0.60	+0.4
4,053,804	-		PFLU_RS17845	0.66	+0.5
4,053,805	+		PFLU_RS17845	0.66	+0.8
4,053,805	+		PFLU_RS17845	0.66	-1.5
4,053,805	+		PFLU_RS17845	0.66	-0.2
4,053,806	-		PFLU_RS17845	0.66	+0.2
4,053,806	-		PFLU_RS17845	0.66	+1.9
4,053,806	-		PFLU_RS17845	0.66	+0.0
4,053,806	-		PFLU_RS17845	0.66	+0.8
4,053,806	-		PFLU_RS17845	0.66	-0.2
4,053,806	-		PFLU_RS17845	0.66	+0.2
4,053,868	+		PFLU_RS17845	0.69	+0.8
4,053,868	+		PFLU_RS17845	0.69	-0.2
4,053,961	+		PFLU_RS17845	0.73	-1.3
4,054,102	+		PFLU_RS17845	0.80	+0.3
4,054,202	-		PFLU_RS17845	0.85	+1.0
4,054,237	+		PFLU_RS17845	0.86	-1.6
4,054,237	+		PFLU_RS17845	0.86	-1.2
4,054,237	+		PFLU_RS17845	0.86	-0.1
4,054,270	+		PFLU_RS17845	0.88	-0.2
4,054,352	-				-0.8
4,054,505	+				+0.1
4,054,505	+				-0.0
4,054,505	+				+0.2
4,054,506	-				+0.4
4,054,506	-				-1.1
4,054,506	-				+0.8
4,054,506	-				+2.2
4,054,509	+				-0.9
4,054,510	-				+0.6
4,054,510	-				+0.2
4,054,716	+		PFLU_RS17850	0.26	-1.0
4,054,716	+		PFLU_RS17850	0.26	-0.4
4,054,849	-		PFLU_RS17850	0.43	+0.6
4,054,916	+		PFLU_RS17850	0.52	-0.9
4,054,965	+		PFLU_RS17850	0.58	+0.6
4,054,966	-		PFLU_RS17850	0.59	+1.1
4,055,112	+		PFLU_RS17850	0.78	-0.7
4,055,112	+		PFLU_RS17850	0.78	-0.2
4,055,113	-		PFLU_RS17850	0.78	-0.4
4,055,249	+				+0.5
4,055,249	+				-0.6
4,055,249	+				+0.1
4,055,249	+				+0.8
4,055,250	-				-0.2
4,055,250	-				+0.1
4,055,250	-				+0.5
4,055,250	-				-1.8
4,055,511	+		PFLU_RS17855	0.36	+0.2