Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13000

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
2,932,769	+		PFLU_RS12995	0.49	-1.7
2,932,770	-		PFLU_RS12995	0.49	-0.4
2,932,770	-		PFLU_RS12995	0.49	-0.0
2,932,770	-		PFLU_RS12995	0.49	-0.3
2,932,786	+		PFLU_RS12995	0.50	+0.1
2,932,786	+		PFLU_RS12995	0.50	-2.8
2,932,786	+		PFLU_RS12995	0.50	+0.9
2,932,787	-		PFLU_RS12995	0.50	+0.0
2,932,826	+		PFLU_RS12995	0.53	-1.1
2,932,826	+		PFLU_RS12995	0.53	+1.4
2,932,826	+		PFLU_RS12995	0.53	-0.4
2,932,826	+		PFLU_RS12995	0.53	-0.1
2,932,826	+		PFLU_RS12995	0.53	+1.4
2,932,827	-		PFLU_RS12995	0.53	-0.2
2,932,827	-		PFLU_RS12995	0.53	-1.0
2,932,827	-		PFLU_RS12995	0.53	+0.6
2,932,827	-		PFLU_RS12995	0.53	+2.0
2,932,868	+		PFLU_RS12995	0.56	+0.9
2,932,868	+		PFLU_RS12995	0.56	-0.3
2,932,868	+		PFLU_RS12995	0.56	+0.9
2,932,869	-		PFLU_RS12995	0.56	-0.6
2,932,939	-		PFLU_RS12995	0.61	-1.8
2,932,939	-		PFLU_RS12995	0.61	+1.0
2,933,175	+		PFLU_RS12995	0.77	+0.6
2,933,175	+		PFLU_RS12995	0.77	+0.9
2,933,175	+		PFLU_RS12995	0.77	-0.4
2,933,176	-		PFLU_RS12995	0.77	-1.4
2,933,176	-		PFLU_RS12995	0.77	-0.1
2,933,320	+		PFLU_RS12995	0.87	-0.1
2,933,321	-		PFLU_RS12995	0.87	+0.0
2,933,386	+				+0.2
2,933,386	+				-0.8
2,933,407	+				-0.1
2,933,408	-				+0.9
2,933,408	-				+0.0
2,933,507	-				+0.9
2,933,507	-				+1.5
2,933,539	+				+0.6
2,933,540	-				+1.2
2,933,602	+				-1.4
2,933,602	+				-1.0
2,933,603	-				-1.9
2,933,603	-				-1.7
2,933,603	-				-1.1
2,933,645	-				-2.5
2,933,645	-				+0.1
2,933,645	-				-2.3
2,933,704	+				-2.1
2,933,704	+				-2.4
2,933,839	+				-1.3
2,933,839	+				-1.2
2,933,839	+				-1.7
2,933,839	+				-0.7
2,933,839	+				-1.8
2,933,840	-				-3.4
2,933,840	-				-0.7
2,933,865	-				-3.1
2,933,904	-		PFLU_RS13000	0.10	-1.1
2,933,980	+		PFLU_RS13000	0.12	-1.0
2,933,980	+		PFLU_RS13000	0.12	-0.2
2,933,980	+		PFLU_RS13000	0.12	-2.4
2,933,980	+		PFLU_RS13000	0.12	-0.5
2,933,980	+		PFLU_RS13000	0.12	-1.8
2,934,002	-		PFLU_RS13000	0.13	-0.5
2,934,002	-		PFLU_RS13000	0.13	+0.1
2,934,058	+		PFLU_RS13000	0.14	-0.4
2,934,059	-		PFLU_RS13000	0.14	-1.8
2,934,059	-		PFLU_RS13000	0.14	-2.2
2,934,087	+		PFLU_RS13000	0.15	-0.4
2,934,088	-		PFLU_RS13000	0.15	-1.9
2,934,184	+		PFLU_RS13000	0.18	-3.5
2,934,184	+		PFLU_RS13000	0.18	-1.6
2,934,299	-		PFLU_RS13000	0.21	-2.6
2,934,299	-		PFLU_RS13000	0.21	-1.7
2,934,397	+		PFLU_RS13000	0.23	+0.9
2,934,397	+		PFLU_RS13000	0.23	-1.1
2,934,397	+		PFLU_RS13000	0.23	-1.1
2,934,398	-		PFLU_RS13000	0.23	-0.3
2,934,408	+		PFLU_RS13000	0.24	-0.8
2,934,408	+		PFLU_RS13000	0.24	-0.7
2,934,409	-		PFLU_RS13000	0.24	-2.8
2,934,432	+		PFLU_RS13000	0.24	-0.1
2,934,433	-		PFLU_RS13000	0.24	-0.9
2,934,433	-		PFLU_RS13000	0.24	-1.5
2,934,433	-		PFLU_RS13000	0.24	-1.9
2,934,469	+		PFLU_RS13000	0.25	-0.4
2,934,469	+		PFLU_RS13000	0.25	-0.7
2,934,469	+		PFLU_RS13000	0.25	-2.1
2,934,469	+		PFLU_RS13000	0.25	-1.0
2,934,469	+		PFLU_RS13000	0.25	+0.2
2,934,470	-		PFLU_RS13000	0.25	-1.9
2,934,470	-		PFLU_RS13000	0.25	-1.4
2,934,470	-		PFLU_RS13000	0.25	-0.6
2,934,470	-		PFLU_RS13000	0.25	+0.1
2,934,571	+		PFLU_RS13000	0.28	-0.7
2,934,571	+		PFLU_RS13000	0.28	-1.4
2,934,571	+		PFLU_RS13000	0.28	-0.4
2,934,572	-		PFLU_RS13000	0.28	-3.1
2,934,572	-		PFLU_RS13000	0.28	-1.3
2,934,664	+		PFLU_RS13000	0.31	-2.4
2,934,664	+		PFLU_RS13000	0.31	-1.4
2,934,664	+		PFLU_RS13000	0.31	-1.7
2,934,664	+		PFLU_RS13000	0.31	-2.0
2,934,665	-		PFLU_RS13000	0.31	-0.9
2,934,665	-		PFLU_RS13000	0.31	-0.7
2,934,665	-		PFLU_RS13000	0.31	-1.1
2,934,665	-		PFLU_RS13000	0.31	-0.3
2,934,665	-		PFLU_RS13000	0.31	-1.6
2,934,685	+		PFLU_RS13000	0.31	-0.6
2,934,685	+		PFLU_RS13000	0.31	-2.7
2,934,685	+		PFLU_RS13000	0.31	+0.7
2,934,686	-		PFLU_RS13000	0.31	-0.0
2,934,686	-		PFLU_RS13000	0.31	+0.3
2,934,813	-		PFLU_RS13000	0.35	+0.9
2,935,318	+		PFLU_RS13000	0.48	-0.6
2,935,318	+		PFLU_RS13000	0.48	-1.4
2,935,319	-		PFLU_RS13000	0.48	-1.5
2,935,417	+		PFLU_RS13000	0.51	-3.0
2,935,417	+		PFLU_RS13000	0.51	-0.7
2,935,417	+		PFLU_RS13000	0.51	+0.6
2,935,417	+		PFLU_RS13000	0.51	-3.8
2,935,417	+		PFLU_RS13000	0.51	-1.7
2,935,418	-		PFLU_RS13000	0.51	-1.7
2,935,418	-		PFLU_RS13000	0.51	+0.6
2,935,418	-		PFLU_RS13000	0.51	-1.1
2,935,474	+		PFLU_RS13000	0.52	+0.6
2,935,567	+		PFLU_RS13000	0.55	-0.7
2,935,586	+		PFLU_RS13000	0.55	-0.8
2,935,586	+		PFLU_RS13000	0.55	-1.6
2,935,586	+		PFLU_RS13000	0.55	-0.8
2,935,587	-		PFLU_RS13000	0.55	+0.2
2,935,587	-		PFLU_RS13000	0.55	-1.2
2,935,587	-		PFLU_RS13000	0.55	-0.7
2,935,588	+		PFLU_RS13000	0.55	-0.4
2,935,588	+		PFLU_RS13000	0.55	-2.9
2,935,588	+		PFLU_RS13000	0.55	-1.9
2,935,589	-		PFLU_RS13000	0.56	-1.3
2,935,589	-		PFLU_RS13000	0.56	-1.6
2,935,589	-		PFLU_RS13000	0.56	-1.7
2,935,618	+		PFLU_RS13000	0.56	-2.3
2,935,618	+		PFLU_RS13000	0.56	-1.1
2,935,618	+		PFLU_RS13000	0.56	-3.0
2,935,619	-		PFLU_RS13000	0.56	-1.2
2,935,619	-		PFLU_RS13000	0.56	-0.7
2,935,619	-		PFLU_RS13000	0.56	+0.1
2,935,718	-		PFLU_RS13000	0.59	-1.9
2,936,092	+		PFLU_RS13000	0.69	-2.6
2,936,092	+		PFLU_RS13000	0.69	-0.3
2,936,093	-		PFLU_RS13000	0.69	-0.3
2,936,093	-		PFLU_RS13000	0.69	-1.9
2,936,093	-		PFLU_RS13000	0.69	-1.0
2,936,093	-		PFLU_RS13000	0.69	-2.1
2,936,093	-		PFLU_RS13000	0.69	-0.6
2,936,145	-		PFLU_RS13000	0.70	-1.1
2,936,249	-		PFLU_RS13000	0.73	-0.0
2,936,381	-		PFLU_RS13000	0.77	-0.4
2,936,916	+				-2.9
2,936,916	+				-1.4
2,936,916	+				-2.7
2,936,917	-				-1.0
2,936,917	-				-1.7
2,936,917	-				+0.3
2,936,917	-				-1.1
2,936,930	-				-1.3
2,937,019	+				-2.0
2,937,020	-				-1.1
2,937,142	+				+0.1
2,937,142	+				-1.8
2,937,142	+				-0.1
2,937,143	-				-0.4
2,937,185	+				-0.7
2,937,185	+				-1.4
2,937,186	-				-1.9
2,937,186	-				+2.9
2,937,227	+				-1.6
2,937,227	+				-1.0
2,937,246	-				-0.9
2,937,246	-				+1.7
2,937,261	+				-0.1
2,937,280	-				-0.8
2,937,356	+				-0.1
2,937,356	+				+0.1
2,937,356	+				-1.6
2,937,357	-				-0.9
2,937,402	+				+2.2
2,937,402	+				+0.1
2,937,402	+				-0.8
2,937,402	+				-2.1
2,937,403	-				+0.4
2,937,403	-				-0.1
2,937,403	-				-0.3
2,937,403	-				-0.6
2,937,490	-				+1.4
2,937,490	-				-1.4
2,937,490	-				-0.3
2,937,547	-				-0.8
2,937,618	+				-0.1
2,937,618	+				-1.8
2,937,618	+				-0.5
2,937,619	-				+0.1
2,937,619	-				+0.0
2,937,619	-				-0.1
2,937,663	+		PFLU_RS13005	0.11	-0.2
2,937,663	+		PFLU_RS13005	0.11	-0.0
2,937,664	-		PFLU_RS13005	0.11	+0.6
2,937,664	-		PFLU_RS13005	0.11	+0.2
2,937,664	-		PFLU_RS13005	0.11	+0.1
2,937,664	-		PFLU_RS13005	0.11	-0.5
2,937,664	-		PFLU_RS13005	0.11	+0.2
2,937,868	-		PFLU_RS13005	0.20	-0.3
2,937,868	-		PFLU_RS13005	0.20	-0.4
2,937,930	+		PFLU_RS13005	0.23	+0.8
2,937,930	+		PFLU_RS13005	0.23	-1.7
2,938,103	+		PFLU_RS13005	0.30	+0.2
2,938,107	+		PFLU_RS13005	0.31	-1.5
2,938,107	+		PFLU_RS13005	0.31	-0.2
2,938,107	+		PFLU_RS13005	0.31	-1.1
2,938,107	+		PFLU_RS13005	0.31	-0.8
2,938,107	+		PFLU_RS13005	0.31	-1.4
2,938,108	-		PFLU_RS13005	0.31	+1.0
2,938,108	-		PFLU_RS13005	0.31	-0.1
2,938,108	-		PFLU_RS13005	0.31	-2.9
2,938,108	-		PFLU_RS13005	0.31	-0.7
2,938,108	-		PFLU_RS13005	0.31	-0.1
2,938,202	+		PFLU_RS13005	0.35	-0.0
2,938,203	-		PFLU_RS13005	0.35	-0.1
2,938,227	+		PFLU_RS13005	0.36	-0.3
2,938,227	+		PFLU_RS13005	0.36	-1.1
2,938,227	+		PFLU_RS13005	0.36	-0.4
2,938,227	+		PFLU_RS13005	0.36	-0.3
2,938,228	-		PFLU_RS13005	0.36	+0.4
2,938,228	-		PFLU_RS13005	0.36	-1.4
2,938,228	-		PFLU_RS13005	0.36	+0.2
2,938,228	-		PFLU_RS13005	0.36	-0.4
2,938,228	-		PFLU_RS13005	0.36	-0.3