Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12205

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
2,706,934	+				-0.6
2,707,026	-				-0.4
2,707,075	+				-1.2
2,707,075	+				-0.4
2,707,075	+				+1.0
2,707,076	-				+0.0
2,707,076	-				-1.3
2,707,076	-				-1.0
2,707,076	-				-1.4
2,707,090	+				-0.7
2,707,090	+				+0.4
2,707,098	+				-1.6
2,707,098	+				+1.4
2,707,098	+				-1.8
2,707,098	+				-1.7
2,707,098	+				-1.6
2,707,098	+				-0.7
2,707,099	-				+0.3
2,707,099	-				-0.2
2,707,099	-				-0.5
2,707,099	-				+0.4
2,707,099	-				-0.5
2,707,099	-				-0.8
2,707,099	-				+0.3
2,707,099	-				-1.0
2,707,099	-				-1.3
2,707,099	-				-1.1
2,707,162	-				+0.3
2,707,169	+				+0.3
2,707,169	+				+0.8
2,707,169	+				+1.0
2,707,170	-				+0.5
2,707,170	-				-0.8
2,707,179	+				+1.4
2,707,180	-				+0.1
2,707,185	+				+0.7
2,707,185	+				-1.4
2,707,185	+				+0.6
2,707,185	+				-0.8
2,707,185	+				+2.1
2,707,185	+				-0.2
2,707,185	+				-0.1
2,707,185	+				+0.1
2,707,185	+				-1.0
2,707,185	+				-0.8
2,707,186	-				-0.3
2,707,186	-				-2.3
2,707,186	-				+1.2
2,707,186	-				+0.4
2,707,186	-				+1.0
2,707,186	-				-0.9
2,707,188	+				+0.7
2,707,188	+				-0.5
2,707,188	+				+1.4
2,707,188	+				-0.6
2,707,188	+				+0.6
2,707,188	+				-0.2
2,707,188	+				-0.4
2,707,188	+				+0.7
2,707,188	+				+1.3
2,707,188	+				-0.3
2,707,189	-				+0.4
2,707,189	-				+0.4
2,707,189	-				+0.5
2,707,189	-				+1.2
2,707,208	+		PFLU_RS31570	0.16	-0.3
2,707,214	+		PFLU_RS31570	0.21	+0.3
2,707,229	+		PFLU_RS31570	0.31	+0.7
2,707,229	+		PFLU_RS31570	0.31	-1.2
2,707,229	+		PFLU_RS31570	0.31	-1.0
2,707,229	+		PFLU_RS31570	0.31	+0.5
2,707,230	-		PFLU_RS31570	0.32	-0.6
2,707,230	-		PFLU_RS31570	0.32	-0.1
2,707,230	-		PFLU_RS31570	0.32	+0.6
2,707,230	-		PFLU_RS31570	0.32	-0.8
2,707,230	-		PFLU_RS31570	0.32	+0.8
2,707,230	-		PFLU_RS31570	0.32	-1.6
2,707,230	-		PFLU_RS31570	0.32	+0.1
2,707,230	-		PFLU_RS31570	0.32	+0.0
2,707,261	+		PFLU_RS31570	0.53	-0.4
2,707,261	+		PFLU_RS31570	0.53	+0.1
2,707,261	+		PFLU_RS31570	0.53	+0.4
2,707,262	-		PFLU_RS31570	0.53	+0.3
2,707,262	-		PFLU_RS31570	0.53	-0.0
2,707,262	-		PFLU_RS31570	0.53	+0.9
2,707,262	-		PFLU_RS31570	0.53	-0.6
2,707,286	+		PFLU_RS31570	0.70	-0.3
2,707,286	+		PFLU_RS31570	0.70	-0.0
2,707,286	+		PFLU_RS31570	0.70	+0.4
2,707,287	-		PFLU_RS31570	0.71	+0.6
2,707,301	-		PFLU_RS31570	0.80	+0.6
2,707,324	+				-1.7
2,707,324	+				+0.1
2,707,520	-		PFLU_RS12200	0.44	+0.2
2,707,520	-		PFLU_RS12200	0.44	-0.4
2,707,561	-		PFLU_RS12200	0.54	-0.7
2,707,579	-		PFLU_RS12200	0.58	+1.4
2,707,619	-		PFLU_RS12200	0.68	+1.5
2,707,620	+		PFLU_RS12200	0.68	-0.7
2,707,620	+		PFLU_RS12200	0.68	+1.0
2,707,620	+		PFLU_RS12200	0.68	-1.1
2,707,620	+		PFLU_RS12200	0.68	-0.7
2,707,620	+		PFLU_RS12200	0.68	-0.2
2,707,620	+		PFLU_RS12200	0.68	-2.4
2,707,621	-		PFLU_RS12200	0.68	+0.8
2,707,621	-		PFLU_RS12200	0.68	-0.9
2,707,621	-		PFLU_RS12200	0.68	+0.8
2,707,621	-		PFLU_RS12200	0.68	-1.8
2,707,621	-		PFLU_RS12200	0.68	+1.4
2,707,621	-		PFLU_RS12200	0.68	+0.6
2,707,621	-		PFLU_RS12200	0.68	-0.3
2,707,621	-		PFLU_RS12200	0.68	+0.0
2,707,674	+		PFLU_RS12200	0.81	+1.5
2,707,729	+				-0.7
2,707,813	-				-0.3
2,707,841	+				+2.5
2,707,884	+				+0.2
2,707,884	+				-0.9
2,707,885	-				+1.0
2,707,905	+				-0.7
2,707,905	+				+0.3
2,707,905	+				+0.8
2,707,906	-				-0.1
2,707,908	+				+0.8
2,707,908	+				+0.5
2,707,908	+				+0.3
2,707,908	+				+0.4
2,707,909	-				+0.1
2,707,909	-				+0.2
2,707,912	+				+0.9
2,707,957	-				-0.6
2,708,072	+		PFLU_RS12205	0.39	+0.2
2,708,180	-		PFLU_RS12205	0.69	+1.6
2,708,180	-		PFLU_RS12205	0.69	-2.0
2,708,291	+				-0.8
2,708,291	+				-1.5
2,708,291	+				+0.5
2,708,291	+				+1.7
2,708,292	-				-0.8
2,708,292	-				-0.6
2,708,292	-				-0.6
2,708,358	+				-1.0
2,708,358	+				+1.5
2,708,359	-				-1.0
2,708,378	-				+0.8
2,708,381	-				-0.3
2,708,406	-				+1.2
2,708,413	+				+0.9
2,708,414	-				-1.0
2,708,560	+		PFLU_RS30720	0.16	+0.5
2,708,561	-		PFLU_RS30720	0.16	+0.0
2,708,622	-		PFLU_RS30720	0.22	+1.0
2,708,629	+		PFLU_RS30720	0.23	+0.4
2,708,630	-		PFLU_RS30720	0.23	+0.0
2,708,649	+		PFLU_RS30720	0.25	+0.0
2,708,676	+		PFLU_RS30720	0.28	+0.5
2,708,752	+		PFLU_RS30720	0.36	-1.1
2,708,798	-		PFLU_RS30720	0.40	+1.0
2,708,804	-		PFLU_RS30720	0.41	-1.6
2,708,866	+		PFLU_RS30720	0.47	+0.5
2,708,867	-		PFLU_RS30720	0.47	+1.6
2,708,875	-		PFLU_RS30720	0.48	+0.3
2,708,923	+		PFLU_RS30720	0.53	-2.6
2,708,923	+		PFLU_RS30720	0.53	+0.6
2,708,923	+		PFLU_RS30720	0.53	+0.1
2,708,924	-		PFLU_RS30720	0.53	-0.4
2,708,942	-		PFLU_RS30720	0.55	-3.1
2,708,975	+		PFLU_RS30720	0.59	+0.3
2,708,994	+		PFLU_RS30720	0.61	-0.1
2,708,994	+		PFLU_RS30720	0.61	-1.0
2,708,995	-		PFLU_RS30720	0.61	-0.6
2,709,088	-		PFLU_RS30720	0.70	+0.5
2,709,128	-		PFLU_RS30720	0.75	+0.5
2,709,128	-		PFLU_RS30720	0.75	+0.7
2,709,134	-		PFLU_RS30720	0.75	+0.0
2,709,156	+		PFLU_RS30720	0.77	+0.0
2,709,157	-		PFLU_RS30720	0.78	-0.1
2,709,157	-		PFLU_RS30720	0.78	+1.3
2,709,157	-		PFLU_RS30720	0.78	-0.8
2,709,181	+		PFLU_RS30720	0.80	-0.5
2,709,200	+		PFLU_RS30720	0.82	+0.6
2,709,200	+		PFLU_RS30720	0.82	+2.6
2,709,200	+		PFLU_RS30720	0.82	-0.6
2,709,200	+		PFLU_RS30720	0.82	+0.4
2,709,201	-		PFLU_RS30720	0.82	-0.2
2,709,201	-		PFLU_RS30720	0.82	-0.6
2,709,201	-		PFLU_RS30720	0.82	-3.1
2,709,204	+		PFLU_RS30720	0.82	-0.3
2,709,205	-		PFLU_RS30720	0.83	+0.2
2,709,247	+		PFLU_RS30720	0.87	+0.0
2,709,248	-		PFLU_RS30720	0.87	-0.9
2,709,248	-		PFLU_RS30720	0.87	-0.7
2,709,281	+				-0.4
2,709,282	-				+0.2