Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08980

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,992,183	+				+1.0
1,992,183	+				+1.3
1,992,183	+				+0.1
1,992,183	+				+0.4
1,992,183	+				+0.1
1,992,183	+				-1.0
1,992,183	+				+0.3
1,992,184	-				+3.0
1,992,184	-				+0.9
1,992,254	+				-0.1
1,992,254	+				+0.4
1,992,255	-				-0.1
1,992,255	-				+0.4
1,992,257	+				+1.0
1,992,257	+				-0.6
1,992,258	-				+3.7
1,992,258	-				+0.2
1,992,258	-				-0.7
1,992,258	-				+0.4
1,992,304	-				+0.2
1,992,310	+				-1.3
1,992,310	+				+1.2
1,992,310	+				+0.7
1,992,310	+				-0.4
1,992,310	+				+0.1
1,992,310	+				-0.6
1,992,310	+				-0.4
1,992,310	+				-0.0
1,992,310	+				+1.2
1,992,310	+				-0.4
1,992,311	-				-0.0
1,992,311	-				+0.4
1,992,311	-				+0.2
1,992,311	-				+0.3
1,992,311	-				+0.2
1,992,311	-				-0.2
1,992,311	-				+0.1
1,992,311	-				-0.6
1,992,311	-				-0.4
1,992,358	-				+0.2
1,992,358	-				-1.5
1,992,358	-				-1.6
1,992,358	-				-0.7
1,992,358	-				+0.4
1,992,358	-				+0.8
1,992,374	+				+1.0
1,992,374	+				+1.2
1,992,374	+				-0.6
1,992,374	+				+0.9
1,992,374	+				+0.4
1,992,375	-				+1.0
1,992,375	-				+0.5
1,992,378	+				-0.7
1,992,393	+				+0.6
1,992,393	+				+0.9
1,992,393	+				+1.4
1,992,393	+				-0.0
1,992,393	+				-0.6
1,992,394	-				+0.7
1,992,394	-				+0.9
1,992,394	-				+0.7
1,992,394	-				+0.8
1,992,449	+				+0.0
1,992,521	+				-0.6
1,992,522	-				+1.1
1,992,534	+				-0.3
1,992,534	+				+1.0
1,992,534	+				+1.2
1,992,535	-				+3.0
1,992,579	+				+1.0
1,992,579	+				+1.0
1,992,580	-				+2.0
1,992,580	-				+0.2
1,992,587	+				+0.6
1,992,587	+				+2.4
1,992,587	+				+0.2
1,992,587	+				+0.5
1,992,588	-				+1.2
1,992,588	-				-0.6
1,992,588	-				+0.3
1,992,639	+				-0.1
1,992,687	+				+0.4
1,992,688	-				+0.8
1,992,740	+		PFLU_RS08980	0.11	+1.7
1,992,740	+		PFLU_RS08980	0.11	+0.6
1,992,741	-		PFLU_RS08980	0.11	+0.6
1,992,741	-		PFLU_RS08980	0.11	+0.2
1,992,862	+		PFLU_RS08980	0.20	+0.1
1,992,862	+		PFLU_RS08980	0.20	+0.8
1,992,863	-		PFLU_RS08980	0.20	+0.6
1,992,967	+		PFLU_RS08980	0.28	-0.1
1,992,967	+		PFLU_RS08980	0.28	-0.9
1,992,967	+		PFLU_RS08980	0.28	-0.5
1,992,968	-		PFLU_RS08980	0.28	+0.7
1,992,968	-		PFLU_RS08980	0.28	-0.1
1,992,968	-		PFLU_RS08980	0.28	+0.5
1,992,968	-		PFLU_RS08980	0.28	-1.5
1,992,968	-		PFLU_RS08980	0.28	+2.0
1,992,968	-		PFLU_RS08980	0.28	+1.5
1,992,969	+		PFLU_RS08980	0.28	+0.7
1,992,969	+		PFLU_RS08980	0.28	+0.8
1,992,969	+		PFLU_RS08980	0.28	+0.6
1,992,969	+		PFLU_RS08980	0.28	-0.2
1,992,970	-		PFLU_RS08980	0.28	+0.4
1,992,979	+		PFLU_RS08980	0.29	+0.9
1,992,979	+		PFLU_RS08980	0.29	+0.0
1,992,979	+		PFLU_RS08980	0.29	+0.3
1,992,980	-		PFLU_RS08980	0.29	+1.3
1,992,980	-		PFLU_RS08980	0.29	-0.3
1,993,135	+		PFLU_RS08980	0.41	+2.4
1,993,135	+		PFLU_RS08980	0.41	+1.2
1,993,135	+		PFLU_RS08980	0.41	+2.7
1,993,135	+		PFLU_RS08980	0.41	+1.6
1,993,135	+		PFLU_RS08980	0.41	+1.0
1,993,136	-		PFLU_RS08980	0.41	+1.2
1,993,136	-		PFLU_RS08980	0.41	+1.0
1,993,136	-		PFLU_RS08980	0.41	+0.0
1,993,164	+		PFLU_RS08980	0.43	+0.8
1,993,164	+		PFLU_RS08980	0.43	+1.0
1,993,165	-		PFLU_RS08980	0.43	+2.0
1,993,165	-		PFLU_RS08980	0.43	+1.7
1,993,174	+		PFLU_RS08980	0.44	-0.9
1,993,174	+		PFLU_RS08980	0.44	+0.6
1,993,174	+		PFLU_RS08980	0.44	+0.7
1,993,174	+		PFLU_RS08980	0.44	+0.7
1,993,175	-		PFLU_RS08980	0.44	+0.3
1,993,205	+		PFLU_RS08980	0.46	+0.3
1,993,205	+		PFLU_RS08980	0.46	+0.4
1,993,205	+		PFLU_RS08980	0.46	-1.7
1,993,205	+		PFLU_RS08980	0.46	-0.2
1,993,206	-		PFLU_RS08980	0.46	-1.6
1,993,321	+		PFLU_RS08980	0.55	+0.4
1,993,321	+		PFLU_RS08980	0.55	+2.8
1,993,321	+		PFLU_RS08980	0.55	-0.0
1,993,321	+		PFLU_RS08980	0.55	+0.4
1,993,321	+		PFLU_RS08980	0.55	+1.7
1,993,321	+		PFLU_RS08980	0.55	+0.1
1,993,321	+		PFLU_RS08980	0.55	+1.1
1,993,321	+		PFLU_RS08980	0.55	+1.2
1,993,321	+		PFLU_RS08980	0.55	+0.7
1,993,321	+		PFLU_RS08980	0.55	+0.9
1,993,321	+		PFLU_RS08980	0.55	+0.4
1,993,321	+		PFLU_RS08980	0.55	+0.6
1,993,321	+		PFLU_RS08980	0.55	+0.7
1,993,321	+		PFLU_RS08980	0.55	+1.7
1,993,321	+		PFLU_RS08980	0.55	-0.5
1,993,322	-		PFLU_RS08980	0.55	+1.3
1,993,322	-		PFLU_RS08980	0.55	+0.2
1,993,322	-		PFLU_RS08980	0.55	+0.3
1,993,322	-		PFLU_RS08980	0.55	+1.5
1,993,322	-		PFLU_RS08980	0.55	+0.1
1,993,322	-		PFLU_RS08980	0.55	+0.6
1,993,322	-		PFLU_RS08980	0.55	+1.3
1,993,322	-		PFLU_RS08980	0.55	-0.0
1,993,322	-		PFLU_RS08980	0.55	+1.1
1,993,322	-		PFLU_RS08980	0.55	-0.1
1,993,322	-		PFLU_RS08980	0.55	-0.0
1,993,322	-		PFLU_RS08980	0.55	+0.4
1,993,322	-		PFLU_RS08980	0.55	+0.2
1,993,322	-		PFLU_RS08980	0.55	+0.4
1,993,322	-		PFLU_RS08980	0.55	+0.7
1,993,322	-		PFLU_RS08980	0.55	+0.9
1,993,322	-		PFLU_RS08980	0.55	+0.8
1,993,322	-		PFLU_RS08980	0.55	+0.1
1,993,323	+		PFLU_RS08980	0.55	+0.7
1,993,323	+		PFLU_RS08980	0.55	-0.4
1,993,323	+		PFLU_RS08980	0.55	-0.1
1,993,323	+		PFLU_RS08980	0.55	+1.1
1,993,323	+		PFLU_RS08980	0.55	-0.4
1,993,323	+		PFLU_RS08980	0.55	+0.2
1,993,324	-		PFLU_RS08980	0.55	-0.4
1,993,324	-		PFLU_RS08980	0.55	+0.5
1,993,402	+		PFLU_RS08980	0.61	-0.4
1,993,402	+		PFLU_RS08980	0.61	+0.9
1,993,402	+		PFLU_RS08980	0.61	+1.3
1,993,402	+		PFLU_RS08980	0.61	+0.4
1,993,402	+		PFLU_RS08980	0.61	+1.0
1,993,402	+		PFLU_RS08980	0.61	+0.5
1,993,402	+		PFLU_RS08980	0.61	+0.1
1,993,403	-		PFLU_RS08980	0.61	+0.6
1,993,403	-		PFLU_RS08980	0.61	-1.5
1,993,403	-		PFLU_RS08980	0.61	+0.4
1,993,507	+		PFLU_RS08980	0.69	+0.7
1,993,508	-		PFLU_RS08980	0.69	-0.6
1,993,508	-		PFLU_RS08980	0.69	-0.4
1,993,508	-		PFLU_RS08980	0.69	+1.3
1,993,508	-		PFLU_RS08980	0.69	+0.9
1,993,508	-		PFLU_RS08980	0.69	-0.7
1,993,508	-		PFLU_RS08980	0.69	+0.1
1,993,534	+		PFLU_RS08980	0.71	+0.5
1,993,534	+		PFLU_RS08980	0.71	+2.7
1,993,534	+		PFLU_RS08980	0.71	-0.7
1,993,535	-		PFLU_RS08980	0.71	+0.4
1,993,535	-		PFLU_RS08980	0.71	-0.6
1,993,535	-		PFLU_RS08980	0.71	+0.1
1,993,878	+				+1.2
1,993,878	+				+0.9
1,993,878	+				-0.1
1,993,878	+				-0.6
1,993,879	-				+1.3
1,993,879	-				-0.6
1,993,879	-				-0.8
1,993,910	-				+0.9
1,993,910	-				-0.3
1,993,910	-				+0.5
1,993,910	-				+0.3
1,993,927	+				-0.6
1,993,952	+				+0.7
1,993,999	+				+0.3
1,993,999	+				+0.4
1,993,999	+				-1.9
1,994,014	+				-0.0
1,994,015	-				+0.5
1,994,024	-				+0.3
1,994,095	+				-0.4
1,994,095	+				-0.1
1,994,095	+				+0.2
1,994,096	-				+0.3
1,994,096	-				+0.5
1,994,096	-				+1.5
1,994,177	+				+0.6
1,994,178	-				+0.1
1,994,241	-		PFLU_RS08985	0.18	+0.7
1,994,344	+		PFLU_RS08985	0.32	-1.1
1,994,365	+		PFLU_RS08985	0.35	+1.1
1,994,490	-		PFLU_RS08985	0.52	+0.8
1,994,490	-		PFLU_RS08985	0.52	-0.9
1,994,490	-		PFLU_RS08985	0.52	+0.1
1,994,525	+		PFLU_RS08985	0.57	+0.6
1,994,525	+		PFLU_RS08985	0.57	-0.5
1,994,525	+		PFLU_RS08985	0.57	+0.3
1,994,525	+		PFLU_RS08985	0.57	-0.4
1,994,525	+		PFLU_RS08985	0.57	+0.6
1,994,526	-		PFLU_RS08985	0.57	-0.3
1,994,669	+		PFLU_RS08985	0.76	-0.2
1,994,670	-		PFLU_RS08985	0.76	+0.3
1,994,672	+		PFLU_RS08985	0.76	+0.5
1,994,672	+		PFLU_RS08985	0.76	-0.6
1,994,672	+		PFLU_RS08985	0.76	+0.1
1,994,672	+		PFLU_RS08985	0.76	+0.2
1,994,672	+		PFLU_RS08985	0.76	+0.4
1,994,673	-		PFLU_RS08985	0.77	+1.2
1,994,673	-		PFLU_RS08985	0.77	+1.5
1,994,673	-		PFLU_RS08985	0.77	+1.2
1,994,673	-		PFLU_RS08985	0.77	-0.9
1,994,673	-		PFLU_RS08985	0.77	+0.2
1,994,715	+		PFLU_RS08985	0.82	-0.5
1,994,715	+		PFLU_RS08985	0.82	-0.0
1,994,739	+		PFLU_RS08985	0.86	-0.8
1,994,739	+		PFLU_RS08985	0.86	+0.6
1,994,748	+		PFLU_RS08985	0.87	-0.4
1,994,748	+		PFLU_RS08985	0.87	+0.8
1,994,748	+		PFLU_RS08985	0.87	+1.4
1,994,749	-		PFLU_RS08985	0.87	-1.9
1,994,750	-		PFLU_RS08985	0.87	+0.1
1,994,753	+		PFLU_RS08985	0.87	+0.2
1,994,753	+		PFLU_RS08985	0.87	+0.0
1,994,753	+		PFLU_RS08985	0.87	-0.3
1,994,753	+		PFLU_RS08985	0.87	+0.0
1,994,753	+		PFLU_RS08985	0.87	-0.1
1,994,778	+				+1.1
1,994,778	+				+0.4
1,994,778	+				-2.6
1,994,779	-				+0.1
1,994,779	-				-1.4
1,994,795	+				+0.4
1,994,795	+				+0.6
1,994,795	+				+0.4
1,994,795	+				+0.8
1,994,795	+				-1.2
1,994,795	+				+0.3
1,994,795	+				+0.7
1,994,795	+				-0.1
1,994,795	+				-0.4
1,994,795	+				+0.2
1,994,795	+				+0.7
1,994,796	-				+1.2
1,994,796	-				+0.9
1,994,796	-				+1.4
1,994,796	-				+1.0
1,994,796	-				+1.7
1,994,796	-				-0.9
1,994,796	-				+0.3
1,994,796	-				+1.1
1,994,796	-				-0.5
1,994,796	-				+0.8
1,994,796	-				-0.7
1,994,796	-				+0.3
1,994,797	+				+1.6
1,994,797	+				-1.0
1,994,797	+				+0.9
1,994,797	+				+1.1
1,994,797	+				+0.9
1,994,798	-				+0.1
1,994,798	-				+0.3
1,994,798	-				+0.3
1,994,809	+				-0.7
1,994,809	+				-2.6
1,994,810	-				+0.0
1,994,810	-				-2.3
1,994,810	-				-0.9
1,994,843	+				-0.1
1,994,843	+				+0.1
1,994,844	-				-2.6
1,994,848	-				+2.4
1,994,891	+				-0.3
1,994,891	+				+0.1
1,994,891	+				-0.3
1,994,892	-				+1.8
1,994,892	-				-1.1