Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08845

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,959,659	-				+0.9
1,959,660	+				-1.1
1,959,660	+				-3.0
1,959,660	+				-0.7
1,959,660	+				-0.5
1,959,660	+				-0.7
1,959,660	+				+1.2
1,959,660	+				-0.5
1,959,660	+				-0.3
1,959,660	+				-0.8
1,959,660	+				-0.6
1,959,661	-				-0.3
1,959,661	-				+0.2
1,959,661	-				+0.5
1,959,661	-				+0.6
1,959,661	-				-0.2
1,959,683	-				+0.2
1,959,758	-				+1.4
1,959,969	+		PFLU_RS08840	0.32	-0.2
1,959,969	+		PFLU_RS08840	0.32	+1.0
1,959,969	+		PFLU_RS08840	0.32	+0.0
1,959,969	+		PFLU_RS08840	0.32	+1.2
1,959,970	-		PFLU_RS08840	0.32	+0.7
1,959,970	-		PFLU_RS08840	0.32	-0.6
1,959,970	-		PFLU_RS08840	0.32	+1.1
1,959,970	-		PFLU_RS08840	0.32	+1.3
1,959,970	-		PFLU_RS08840	0.32	-1.1
1,959,970	-		PFLU_RS08840	0.32	+0.3
1,960,020	+		PFLU_RS08840	0.38	-0.6
1,960,020	+		PFLU_RS08840	0.38	-1.1
1,960,020	+		PFLU_RS08840	0.38	-0.1
1,960,020	+		PFLU_RS08840	0.38	-1.0
1,960,020	+		PFLU_RS08840	0.38	-1.0
1,960,020	+		PFLU_RS08840	0.38	-1.1
1,960,020	+		PFLU_RS08840	0.38	-0.1
1,960,021	-		PFLU_RS08840	0.38	+0.6
1,960,021	-		PFLU_RS08840	0.38	+1.4
1,960,021	-		PFLU_RS08840	0.38	+0.4
1,960,021	-		PFLU_RS08840	0.38	-0.1
1,960,021	-		PFLU_RS08840	0.38	-0.2
1,960,021	-		PFLU_RS08840	0.38	+1.4
1,960,021	-		PFLU_RS08840	0.38	+0.8
1,960,021	-		PFLU_RS08840	0.38	-0.9
1,960,113	+		PFLU_RS08840	0.50	-0.0
1,960,113	+		PFLU_RS08840	0.50	-0.5
1,960,113	+		PFLU_RS08840	0.50	+0.3
1,960,114	-		PFLU_RS08840	0.50	-1.2
1,960,114	-		PFLU_RS08840	0.50	-0.3
1,960,114	-		PFLU_RS08840	0.50	+0.5
1,960,114	-		PFLU_RS08840	0.50	-0.9
1,960,132	-		PFLU_RS08840	0.52	-0.6
1,960,132	-		PFLU_RS08840	0.52	+1.4
1,960,194	+		PFLU_RS08840	0.59	+0.2
1,960,194	+		PFLU_RS08840	0.59	-0.6
1,960,194	+		PFLU_RS08840	0.59	-0.0
1,960,194	+		PFLU_RS08840	0.59	+0.9
1,960,194	+		PFLU_RS08840	0.59	+2.4
1,960,195	-		PFLU_RS08840	0.60	+1.1
1,960,195	-		PFLU_RS08840	0.60	-0.1
1,960,209	+		PFLU_RS08840	0.61	+0.0
1,960,210	-		PFLU_RS08840	0.61	+0.9
1,960,210	-		PFLU_RS08840	0.61	-0.7
1,960,210	-		PFLU_RS08840	0.61	-0.1
1,960,212	+		PFLU_RS08840	0.62	+0.0
1,960,212	+		PFLU_RS08840	0.62	+0.5
1,960,212	+		PFLU_RS08840	0.62	-2.1
1,960,212	+		PFLU_RS08840	0.62	-0.2
1,960,260	+		PFLU_RS08840	0.67	+0.1
1,960,260	+		PFLU_RS08840	0.67	-0.8
1,960,275	+		PFLU_RS08840	0.69	-0.2
1,960,276	-		PFLU_RS08840	0.69	+0.6
1,960,276	-		PFLU_RS08840	0.69	-0.7
1,960,299	+		PFLU_RS08840	0.72	+0.9
1,960,299	+		PFLU_RS08840	0.72	+0.1
1,960,299	+		PFLU_RS08840	0.72	+2.2
1,960,299	+		PFLU_RS08840	0.72	-0.9
1,960,300	-		PFLU_RS08840	0.72	-0.8
1,960,300	-		PFLU_RS08840	0.72	+1.0
1,960,300	-		PFLU_RS08840	0.72	-0.1
1,960,300	-		PFLU_RS08840	0.72	+0.3
1,960,314	+		PFLU_RS08840	0.74	-0.1
1,960,353	+		PFLU_RS08840	0.79	+1.0
1,960,353	+		PFLU_RS08840	0.79	+0.9
1,960,353	+		PFLU_RS08840	0.79	-0.6
1,960,354	-		PFLU_RS08840	0.79	+0.7
1,960,354	-		PFLU_RS08840	0.79	+1.2
1,960,371	+		PFLU_RS08840	0.81	+0.9
1,960,371	+		PFLU_RS08840	0.81	+1.0
1,960,371	+		PFLU_RS08840	0.81	-0.4
1,960,371	+		PFLU_RS08840	0.81	+0.4
1,960,371	+		PFLU_RS08840	0.81	-0.1
1,960,371	+		PFLU_RS08840	0.81	-0.3
1,960,371	+		PFLU_RS08840	0.81	-0.4
1,960,372	-		PFLU_RS08840	0.81	-1.6
1,960,382	+		PFLU_RS08840	0.82	-0.6
1,960,382	+		PFLU_RS08840	0.82	-1.1
1,960,382	+		PFLU_RS08840	0.82	+0.5
1,960,382	+		PFLU_RS08840	0.82	+2.2
1,960,383	-		PFLU_RS08840	0.82	+0.7
1,960,383	-		PFLU_RS08840	0.82	+0.7
1,960,383	-		PFLU_RS08840	0.82	-0.5
1,960,383	-		PFLU_RS08840	0.82	+0.2
1,960,383	-		PFLU_RS08840	0.82	+1.7
1,960,494	+				+0.1
1,960,494	+				-0.3
1,960,495	-				+0.4
1,960,495	-				+0.5
1,960,528	+				+2.8
1,960,528	+				+0.5
1,960,528	+				+1.2
1,960,528	+				-0.9
1,960,529	-				+0.9
1,960,529	-				+0.9
1,960,529	-				-0.4
1,960,529	-				+0.8
1,960,561	+				-1.0
1,960,562	-				+0.6
1,960,775	+		PFLU_RS08845	0.25	+0.5
1,960,777	+		PFLU_RS08845	0.25	-0.5
1,960,777	+		PFLU_RS08845	0.25	+0.2
1,960,778	-		PFLU_RS08845	0.25	-0.5
1,960,864	-		PFLU_RS08845	0.35	-1.7
1,961,031	+		PFLU_RS08845	0.54	+0.2
1,961,032	-		PFLU_RS08845	0.54	+0.5
1,961,061	-		PFLU_RS08845	0.57	+0.7
1,961,062	+		PFLU_RS08845	0.57	-1.1
1,961,062	+		PFLU_RS08845	0.57	-0.9
1,961,062	+		PFLU_RS08845	0.57	+0.3
1,961,063	-		PFLU_RS08845	0.57	-1.7
1,961,063	-		PFLU_RS08845	0.57	+0.5
1,961,063	-		PFLU_RS08845	0.57	-0.8
1,961,063	-		PFLU_RS08845	0.57	-0.3
1,961,212	+		PFLU_RS08845	0.74	+0.4
1,961,212	+		PFLU_RS08845	0.74	+1.4
1,961,212	+		PFLU_RS08845	0.74	+1.1
1,961,212	+		PFLU_RS08845	0.74	-0.5
1,961,212	+		PFLU_RS08845	0.74	+0.7
1,961,212	+		PFLU_RS08845	0.74	+0.9
1,961,212	+		PFLU_RS08845	0.74	-0.1
1,961,212	+		PFLU_RS08845	0.74	-0.0
1,961,212	+		PFLU_RS08845	0.74	+0.7
1,961,212	+		PFLU_RS08845	0.74	+1.0
1,961,212	+		PFLU_RS08845	0.74	-1.1
1,961,212	+		PFLU_RS08845	0.74	+0.6
1,961,212	+		PFLU_RS08845	0.74	-1.0
1,961,213	-		PFLU_RS08845	0.75	-0.9
1,961,213	-		PFLU_RS08845	0.75	-0.2
1,961,213	-		PFLU_RS08845	0.75	-1.2
1,961,213	-		PFLU_RS08845	0.75	-1.0
1,961,213	-		PFLU_RS08845	0.75	+1.8
1,961,213	-		PFLU_RS08845	0.75	-0.3
1,961,213	-		PFLU_RS08845	0.75	-2.0
1,961,213	-		PFLU_RS08845	0.75	+0.6
1,961,213	-		PFLU_RS08845	0.75	-0.0
1,961,213	-		PFLU_RS08845	0.75	-0.3
1,961,213	-		PFLU_RS08845	0.75	-0.6
1,961,213	-		PFLU_RS08845	0.75	-0.4
1,961,213	-		PFLU_RS08845	0.75	-1.3
1,961,213	-		PFLU_RS08845	0.75	+0.6
1,961,213	-		PFLU_RS08845	0.75	+1.0
1,961,213	-		PFLU_RS08845	0.75	-1.3
1,961,213	-		PFLU_RS08845	0.75	+1.2
1,961,213	-		PFLU_RS08845	0.75	+0.4
1,961,213	-		PFLU_RS08845	0.75	+0.5
1,961,216	+		PFLU_RS08845	0.75	+0.1
1,961,216	+		PFLU_RS08845	0.75	+0.7
1,961,216	+		PFLU_RS08845	0.75	-0.4
1,961,216	+		PFLU_RS08845	0.75	-0.5
1,961,216	+		PFLU_RS08845	0.75	-0.9
1,961,216	+		PFLU_RS08845	0.75	+0.6
1,961,216	+		PFLU_RS08845	0.75	+0.6
1,961,216	+		PFLU_RS08845	0.75	+0.9
1,961,216	+		PFLU_RS08845	0.75	-0.5
1,961,216	+		PFLU_RS08845	0.75	-0.2
1,961,216	+		PFLU_RS08845	0.75	+1.4
1,961,216	+		PFLU_RS08845	0.75	-0.3
1,961,216	+		PFLU_RS08845	0.75	+1.9
1,961,216	+		PFLU_RS08845	0.75	-0.4
1,961,217	-		PFLU_RS08845	0.75	-0.9
1,961,217	-		PFLU_RS08845	0.75	-2.1
1,961,217	-		PFLU_RS08845	0.75	-1.0
1,961,217	-		PFLU_RS08845	0.75	-1.1
1,961,217	-		PFLU_RS08845	0.75	+0.2
1,961,217	-		PFLU_RS08845	0.75	+0.4
1,961,217	-		PFLU_RS08845	0.75	-0.4
1,961,217	-		PFLU_RS08845	0.75	+1.4
1,961,217	-		PFLU_RS08845	0.75	+0.4
1,961,217	-		PFLU_RS08845	0.75	+0.6
1,961,217	-		PFLU_RS08845	0.75	+0.1
1,961,217	-		PFLU_RS08845	0.75	+0.3
1,961,217	-		PFLU_RS08845	0.75	-0.6
1,961,217	-		PFLU_RS08845	0.75	-3.6
1,961,217	-		PFLU_RS08845	0.75	-0.4
1,961,217	-		PFLU_RS08845	0.75	-1.2
1,961,218	+		PFLU_RS08845	0.75	-0.5
1,961,218	+		PFLU_RS08845	0.75	+0.5
1,961,218	+		PFLU_RS08845	0.75	-2.1
1,961,219	-		PFLU_RS08845	0.75	-0.1
1,961,219	-		PFLU_RS08845	0.75	-0.8
1,961,219	-		PFLU_RS08845	0.75	-0.3
1,961,449	-				-0.3
1,961,471	+				+0.2
1,961,471	+				-0.3
1,961,471	+				-0.9
1,961,471	+				+0.3
1,961,471	+				+0.5
1,961,471	+				+0.8
1,961,471	+				-1.4
1,961,472	-				-0.2
1,961,472	-				-1.9
1,961,472	-				-0.8
1,961,476	+				+0.9
1,961,476	+				-0.4
1,961,476	+				-0.1
1,961,477	-				-0.4
1,961,759	+		PFLU_RS08850	0.20	+0.2
1,961,759	+		PFLU_RS08850	0.20	-0.3
1,961,760	-		PFLU_RS08850	0.20	+0.5
1,961,760	-		PFLU_RS08850	0.20	-0.4
1,961,760	-		PFLU_RS08850	0.20	-0.1
1,961,771	-		PFLU_RS08850	0.21	+1.6
1,961,873	+		PFLU_RS08850	0.28	-0.6
1,961,874	-		PFLU_RS08850	0.29	+0.3
1,961,936	+		PFLU_RS08850	0.33	+1.1
1,962,010	-		PFLU_RS08850	0.38	+0.1