Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08665

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08655 and PFLU_RS08660 overlap by 4 nucleotidesPFLU_RS08660 and PFLU_RS08665 overlap by 4 nucleotidesPFLU_RS08665 and PFLU_RS08670 are separated by 3 nucleotides PFLU_RS08655: PFLU_RS08655 - heme ABC transporter permease, at 1,925,915 to 1,926,670 _RS08655 PFLU_RS08660: PFLU_RS08660 - heme exporter protein CcmD, at 1,926,667 to 1,926,843 _RS08660 PFLU_RS08665: PFLU_RS08665 - cytochrome c maturation protein CcmE, at 1,926,840 to 1,927,295 _RS08665 PFLU_RS08670: PFLU_RS08670 - heme lyase CcmF/NrfE family subunit, at 1,927,299 to 1,929,287 _RS08670 Position (kb) 1926 1927 1928Strain fitness (log2 ratio) -1 0 1 2at 1925.848 kb on + strandat 1925.848 kb on + strandat 1925.849 kb on - strandat 1925.849 kb on - strandat 1925.849 kb on - strandat 1925.849 kb on - strandat 1925.856 kb on - strandat 1925.856 kb on - strandat 1925.856 kb on - strandat 1925.862 kb on + strandat 1925.871 kb on + strandat 1925.871 kb on + strandat 1925.872 kb on - strandat 1925.960 kb on + strandat 1925.961 kb on - strandat 1925.961 kb on - strandat 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.089 kb on + strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.090 kb on - strand, within PFLU_RS08655at 1926.091 kb on + strand, within PFLU_RS08655at 1926.092 kb on - strand, within PFLU_RS08655at 1926.129 kb on - strand, within PFLU_RS08655at 1926.332 kb on + strand, within PFLU_RS08655at 1926.333 kb on - strand, within PFLU_RS08655at 1926.333 kb on - strand, within PFLU_RS08655at 1926.440 kb on + strand, within PFLU_RS08655at 1926.554 kb on + strand, within PFLU_RS08655at 1926.555 kb on - strand, within PFLU_RS08655at 1926.718 kb on + strand, within PFLU_RS08660at 1926.718 kb on + strand, within PFLU_RS08660at 1926.718 kb on + strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.719 kb on - strand, within PFLU_RS08660at 1926.733 kb on + strand, within PFLU_RS08660at 1926.951 kb on + strand, within PFLU_RS08665at 1926.951 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.100 kb on + strand, within PFLU_RS08665at 1927.101 kb on + strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.101 kb on - strand, within PFLU_RS08665at 1927.105 kb on - strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.221 kb on + strand, within PFLU_RS08665at 1927.222 kb on - strand, within PFLU_RS08665at 1927.317 kb on - strandat 1927.488 kb on + strandat 1927.488 kb on + strandat 1927.488 kb on + strandat 1927.489 kb on - strandat 1927.489 kb on - strandat 1927.489 kb on - strandat 1927.521 kb on + strand, within PFLU_RS08670at 1927.521 kb on + strand, within PFLU_RS08670at 1927.521 kb on + strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.522 kb on - strand, within PFLU_RS08670at 1927.532 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.557 kb on + strand, within PFLU_RS08670at 1927.558 kb on - strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.560 kb on + strand, within PFLU_RS08670at 1927.561 kb on - strand, within PFLU_RS08670at 1927.561 kb on - strand, within PFLU_RS08670at 1927.561 kb on - strand, within PFLU_RS08670at 1927.688 kb on - strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.845 kb on + strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.846 kb on - strand, within PFLU_RS08670at 1927.854 kb on + strand, within PFLU_RS08670at 1927.854 kb on + strand, within PFLU_RS08670at 1927.854 kb on + strand, within PFLU_RS08670at 1927.854 kb on + strand, within PFLU_RS08670at 1928.004 kb on + strand, within PFLU_RS08670at 1928.005 kb on - strand, within PFLU_RS08670at 1928.005 kb on - strand, within PFLU_RS08670at 1928.005 kb on - strand, within PFLU_RS08670at 1928.005 kb on - strand, within PFLU_RS08670at 1928.007 kb on + strand, within PFLU_RS08670at 1928.007 kb on + strand, within PFLU_RS08670at 1928.007 kb on + strand, within PFLU_RS08670at 1928.007 kb on + strand, within PFLU_RS08670at 1928.008 kb on - strand, within PFLU_RS08670

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,925,848 + +0.1
1,925,848 + -1.3
1,925,849 - +1.7
1,925,849 - +0.7
1,925,849 - +1.4
1,925,849 - -0.7
1,925,856 - +0.4
1,925,856 - -1.6
1,925,856 - -0.2
1,925,862 + +0.3
1,925,871 + +2.4
1,925,871 + -0.5
1,925,872 - -0.6
1,925,960 + +1.4
1,925,961 - +1.4
1,925,961 - +1.4
1,926,089 + PFLU_RS08655 0.23 +1.4
1,926,089 + PFLU_RS08655 0.23 +0.4
1,926,089 + PFLU_RS08655 0.23 +1.4
1,926,089 + PFLU_RS08655 0.23 -0.9
1,926,089 + PFLU_RS08655 0.23 -0.6
1,926,089 + PFLU_RS08655 0.23 +0.4
1,926,089 + PFLU_RS08655 0.23 +1.4
1,926,089 + PFLU_RS08655 0.23 +1.4
1,926,089 + PFLU_RS08655 0.23 -0.1
1,926,090 - PFLU_RS08655 0.23 +0.4
1,926,090 - PFLU_RS08655 0.23 +1.4
1,926,090 - PFLU_RS08655 0.23 -0.6
1,926,090 - PFLU_RS08655 0.23 -0.6
1,926,090 - PFLU_RS08655 0.23 +1.4
1,926,090 - PFLU_RS08655 0.23 -0.9
1,926,091 + PFLU_RS08655 0.23 -1.7
1,926,092 - PFLU_RS08655 0.23 +0.9
1,926,129 - PFLU_RS08655 0.28 +1.4
1,926,332 + PFLU_RS08655 0.55 +1.4
1,926,333 - PFLU_RS08655 0.55 +1.4
1,926,333 - PFLU_RS08655 0.55 +1.4
1,926,440 + PFLU_RS08655 0.69 +1.4
1,926,554 + PFLU_RS08655 0.85 +0.4
1,926,555 - PFLU_RS08655 0.85 +0.4
1,926,718 + PFLU_RS08660 0.29 -0.1
1,926,718 + PFLU_RS08660 0.29 +1.4
1,926,718 + PFLU_RS08660 0.29 +1.4
1,926,719 - PFLU_RS08660 0.29 -0.1
1,926,719 - PFLU_RS08660 0.29 +1.4
1,926,719 - PFLU_RS08660 0.29 -0.6
1,926,719 - PFLU_RS08660 0.29 +1.4
1,926,719 - PFLU_RS08660 0.29 +0.4
1,926,719 - PFLU_RS08660 0.29 -0.9
1,926,719 - PFLU_RS08660 0.29 -0.9
1,926,719 - PFLU_RS08660 0.29 -0.1
1,926,719 - PFLU_RS08660 0.29 +1.4
1,926,719 - PFLU_RS08660 0.29 +2.4
1,926,719 - PFLU_RS08660 0.29 +1.4
1,926,733 + PFLU_RS08660 0.37 +0.4
1,926,951 + PFLU_RS08665 0.24 -0.6
1,926,951 + PFLU_RS08665 0.24 +0.4
1,927,100 + PFLU_RS08665 0.57 +1.4
1,927,100 + PFLU_RS08665 0.57 -1.6
1,927,100 + PFLU_RS08665 0.57 +0.4
1,927,100 + PFLU_RS08665 0.57 -0.9
1,927,100 + PFLU_RS08665 0.57 +0.4
1,927,100 + PFLU_RS08665 0.57 -0.1
1,927,101 + PFLU_RS08665 0.57 +0.4
1,927,101 - PFLU_RS08665 0.57 -0.1
1,927,101 - PFLU_RS08665 0.57 -0.1
1,927,101 - PFLU_RS08665 0.57 +1.4
1,927,101 - PFLU_RS08665 0.57 +1.4
1,927,101 - PFLU_RS08665 0.57 -0.6
1,927,101 - PFLU_RS08665 0.57 +0.4
1,927,101 - PFLU_RS08665 0.57 +0.4
1,927,101 - PFLU_RS08665 0.57 -0.1
1,927,105 - PFLU_RS08665 0.58 +0.4
1,927,221 + PFLU_RS08665 0.84 +1.4
1,927,221 + PFLU_RS08665 0.84 -0.6
1,927,221 + PFLU_RS08665 0.84 +1.4
1,927,222 - PFLU_RS08665 0.84 +1.4
1,927,317 - -0.6
1,927,488 + +0.9
1,927,488 + +0.4
1,927,488 + +0.4
1,927,489 - +1.4
1,927,489 - +0.4
1,927,489 - +1.4
1,927,521 + PFLU_RS08670 0.11 +0.4
1,927,521 + PFLU_RS08670 0.11 -0.6
1,927,521 + PFLU_RS08670 0.11 +0.4
1,927,522 - PFLU_RS08670 0.11 +0.4
1,927,522 - PFLU_RS08670 0.11 +1.4
1,927,522 - PFLU_RS08670 0.11 +1.4
1,927,522 - PFLU_RS08670 0.11 +1.4
1,927,522 - PFLU_RS08670 0.11 +0.4
1,927,522 - PFLU_RS08670 0.11 -0.1
1,927,532 + PFLU_RS08670 0.12 +0.4
1,927,557 + PFLU_RS08670 0.13 +0.4
1,927,557 + PFLU_RS08670 0.13 +0.4
1,927,557 + PFLU_RS08670 0.13 -0.1
1,927,557 + PFLU_RS08670 0.13 +0.9
1,927,557 + PFLU_RS08670 0.13 -0.1
1,927,558 - PFLU_RS08670 0.13 -0.1
1,927,560 + PFLU_RS08670 0.13 +0.4
1,927,560 + PFLU_RS08670 0.13 -0.6
1,927,560 + PFLU_RS08670 0.13 +0.4
1,927,560 + PFLU_RS08670 0.13 -0.9
1,927,561 - PFLU_RS08670 0.13 +1.4
1,927,561 - PFLU_RS08670 0.13 +0.4
1,927,561 - PFLU_RS08670 0.13 -0.1
1,927,688 - PFLU_RS08670 0.20 +0.4
1,927,845 + PFLU_RS08670 0.27 +1.4
1,927,845 + PFLU_RS08670 0.27 +0.4
1,927,845 + PFLU_RS08670 0.27 +0.4
1,927,845 + PFLU_RS08670 0.27 +0.4
1,927,845 + PFLU_RS08670 0.27 +1.4
1,927,846 - PFLU_RS08670 0.28 +1.4
1,927,846 - PFLU_RS08670 0.28 -0.1
1,927,846 - PFLU_RS08670 0.28 +2.4
1,927,846 - PFLU_RS08670 0.28 +0.4
1,927,846 - PFLU_RS08670 0.28 -0.1
1,927,846 - PFLU_RS08670 0.28 +1.4
1,927,854 + PFLU_RS08670 0.28 -0.1
1,927,854 + PFLU_RS08670 0.28 +1.4
1,927,854 + PFLU_RS08670 0.28 +1.4
1,927,854 + PFLU_RS08670 0.28 +0.4
1,928,004 + PFLU_RS08670 0.35 +0.4
1,928,005 - PFLU_RS08670 0.35 +0.4
1,928,005 - PFLU_RS08670 0.35 +1.4
1,928,005 - PFLU_RS08670 0.35 +0.9
1,928,005 - PFLU_RS08670 0.35 +1.4
1,928,007 + PFLU_RS08670 0.36 +1.4
1,928,007 + PFLU_RS08670 0.36 -0.1
1,928,007 + PFLU_RS08670 0.36 +1.4
1,928,007 + PFLU_RS08670 0.36 -0.6
1,928,008 - PFLU_RS08670 0.36 +2.4

Or see this region's nucleotide sequence