Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08110

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08105 and PFLU_RS08110 overlap by 4 nucleotidesPFLU_RS08110 and PFLU_RS08115 are separated by 120 nucleotides PFLU_RS08105: PFLU_RS08105 - bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase, at 1,807,904 to 1,810,150 _RS08105 PFLU_RS08110: PFLU_RS08110 - (d)CMP kinase, at 1,810,147 to 1,810,836 _RS08110 PFLU_RS08115: PFLU_RS08115 - 30S ribosomal protein S1, at 1,810,957 to 1,812,648 _RS08115 Position (kb) 1810 1811Strain fitness (log2 ratio) -1 0 1 2at 1809.323 kb on + strand, within PFLU_RS08105at 1809.323 kb on + strand, within PFLU_RS08105at 1809.380 kb on + strand, within PFLU_RS08105at 1809.380 kb on + strand, within PFLU_RS08105at 1809.381 kb on - strand, within PFLU_RS08105at 1809.523 kb on + strand, within PFLU_RS08105at 1809.524 kb on - strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.526 kb on - strand, within PFLU_RS08105at 1809.564 kb on + strand, within PFLU_RS08105at 1809.946 kb on + strandat 1809.946 kb on + strandat 1809.946 kb on + strandat 1810.023 kb on + strandat 1810.023 kb on + strandat 1810.023 kb on + strandat 1810.023 kb on + strandat 1810.078 kb on + strandat 1810.078 kb on + strandat 1810.078 kb on + strandat 1810.078 kb on + strandat 1810.078 kb on + strandat 1810.099 kb on + strandat 1810.099 kb on + strandat 1810.099 kb on + strandat 1810.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,809,323 + PFLU_RS08105 0.63 +1.5
1,809,323 + PFLU_RS08105 0.63 +1.5
1,809,380 + PFLU_RS08105 0.66 +0.5
1,809,380 + PFLU_RS08105 0.66 +1.5
1,809,381 - PFLU_RS08105 0.66 +1.5
1,809,523 + PFLU_RS08105 0.72 +1.5
1,809,524 - PFLU_RS08105 0.72 +0.5
1,809,525 + PFLU_RS08105 0.72 +2.1
1,809,525 + PFLU_RS08105 0.72 -0.1
1,809,525 + PFLU_RS08105 0.72 +0.5
1,809,525 + PFLU_RS08105 0.72 +1.5
1,809,525 + PFLU_RS08105 0.72 +1.5
1,809,525 + PFLU_RS08105 0.72 +2.5
1,809,525 + PFLU_RS08105 0.72 +1.5
1,809,525 + PFLU_RS08105 0.72 +1.5
1,809,525 + PFLU_RS08105 0.72 +1.5
1,809,525 + PFLU_RS08105 0.72 +0.5
1,809,525 + PFLU_RS08105 0.72 +2.5
1,809,526 - PFLU_RS08105 0.72 +1.5
1,809,564 + PFLU_RS08105 0.74 +0.2
1,809,946 + -0.5
1,809,946 + +1.0
1,809,946 + +2.5
1,810,023 + +0.3
1,810,023 + -0.1
1,810,023 + -0.1
1,810,023 + -0.8
1,810,078 + +0.1
1,810,078 + +0.0
1,810,078 + +0.7
1,810,078 + -0.3
1,810,078 + +0.1
1,810,099 + +0.4
1,810,099 + -0.1
1,810,099 + +0.6
1,810,099 + +0.8

Or see this region's nucleotide sequence