Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07370

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,638,289	+				-0.8
1,638,289	+				+0.7
1,638,289	+				+1.2
1,638,290	-				+0.4
1,638,290	-				-1.3
1,638,380	+				+0.2
1,638,380	+				-0.4
1,638,381	-				+0.5
1,638,381	-				-0.2
1,638,776	+		PFLU_RS07365	0.54	+0.8
1,638,777	-		PFLU_RS07365	0.54	+1.0
1,638,777	-		PFLU_RS07365	0.54	-0.1
1,638,812	+		PFLU_RS07365	0.58	-0.6
1,638,812	+		PFLU_RS07365	0.58	-0.4
1,638,813	-		PFLU_RS07365	0.58	+1.4
1,638,813	-		PFLU_RS07365	0.58	+0.5
1,638,818	+		PFLU_RS07365	0.59	+1.2
1,638,818	+		PFLU_RS07365	0.59	-1.3
1,638,818	+		PFLU_RS07365	0.59	+0.5
1,638,819	-		PFLU_RS07365	0.59	-1.3
1,638,819	-		PFLU_RS07365	0.59	-0.2
1,638,941	+		PFLU_RS07365	0.73	+1.9
1,638,942	-		PFLU_RS07365	0.73	-1.3
1,638,942	-		PFLU_RS07365	0.73	-0.6
1,638,942	-		PFLU_RS07365	0.73	+1.5
1,638,942	-		PFLU_RS07365	0.73	-1.1
1,638,942	-		PFLU_RS07365	0.73	-1.5
1,638,962	+		PFLU_RS07365	0.75	-0.7
1,638,962	+		PFLU_RS07365	0.75	-0.5
1,638,962	+		PFLU_RS07365	0.75	+0.7
1,638,963	-		PFLU_RS07365	0.75	-1.7
1,639,178	+				-0.6
1,639,179	-				+1.1
1,639,179	-				+0.8
1,639,201	+				+0.2
1,639,202	-				-0.1
1,639,202	-				+1.6
1,639,202	-				+0.0
1,639,202	-				-3.1
1,639,262	+				+0.8
1,639,262	+				+0.4
1,639,264	+				+1.8
1,639,265	-				-1.4
1,639,347	+				-1.9
1,639,348	-				+0.9
1,639,363	+				+2.4
1,639,363	+				+0.1
1,639,363	+				+0.3
1,639,363	+				+0.4
1,639,364	-				-0.8
1,639,364	-				+0.5
1,639,526	-		PFLU_RS07370	0.21	-0.7
1,639,526	-		PFLU_RS07370	0.21	+1.1
1,639,542	+		PFLU_RS07370	0.22	-2.5
1,639,543	-		PFLU_RS07370	0.22	-0.0
1,639,800	+		PFLU_RS07370	0.41	+1.7
1,639,800	+		PFLU_RS07370	0.41	+0.9
1,639,800	+		PFLU_RS07370	0.41	-1.0
1,639,801	-		PFLU_RS07370	0.41	+0.0
1,639,801	-		PFLU_RS07370	0.41	+0.2
1,639,801	-		PFLU_RS07370	0.41	+1.5
1,639,801	-		PFLU_RS07370	0.41	-1.3
1,639,887	+		PFLU_RS07370	0.48	+1.2
1,639,888	-		PFLU_RS07370	0.48	+0.5
1,639,888	-		PFLU_RS07370	0.48	-0.0
1,639,888	-		PFLU_RS07370	0.48	+0.8
1,640,037	+		PFLU_RS07370	0.59	+0.2
1,640,037	+		PFLU_RS07370	0.59	+0.6
1,640,037	+		PFLU_RS07370	0.59	+1.7
1,640,037	+		PFLU_RS07370	0.59	-3.1
1,640,037	+		PFLU_RS07370	0.59	+0.9
1,640,037	+		PFLU_RS07370	0.59	-2.0
1,640,037	+		PFLU_RS07370	0.59	+2.0
1,640,037	+		PFLU_RS07370	0.59	+1.3
1,640,037	+		PFLU_RS07370	0.59	+1.0
1,640,037	+		PFLU_RS07370	0.59	+0.2
1,640,037	+		PFLU_RS07370	0.59	+1.2
1,640,037	+		PFLU_RS07370	0.59	+1.1
1,640,037	+		PFLU_RS07370	0.59	+0.3
1,640,037	+		PFLU_RS07370	0.59	+0.7
1,640,037	+		PFLU_RS07370	0.59	+1.2
1,640,037	+		PFLU_RS07370	0.59	+0.5
1,640,038	-		PFLU_RS07370	0.59	+0.4
1,640,038	-		PFLU_RS07370	0.59	+0.3
1,640,038	-		PFLU_RS07370	0.59	+0.2
1,640,038	-		PFLU_RS07370	0.59	+0.3
1,640,038	-		PFLU_RS07370	0.59	-0.2
1,640,038	-		PFLU_RS07370	0.59	-0.1
1,640,038	-		PFLU_RS07370	0.59	+0.8
1,640,038	-		PFLU_RS07370	0.59	-0.5
1,640,038	-		PFLU_RS07370	0.59	+0.6
1,640,038	-		PFLU_RS07370	0.59	+0.6
1,640,038	-		PFLU_RS07370	0.59	+0.1
1,640,038	-		PFLU_RS07370	0.59	-1.1
1,640,038	-		PFLU_RS07370	0.59	+0.2
1,640,038	-		PFLU_RS07370	0.59	-1.1
1,640,067	+		PFLU_RS07370	0.61	-3.2
1,640,067	+		PFLU_RS07370	0.61	+0.9
1,640,068	-		PFLU_RS07370	0.62	-0.2
1,640,068	-		PFLU_RS07370	0.62	-0.2
1,640,068	-		PFLU_RS07370	0.62	+0.2
1,640,073	+		PFLU_RS07370	0.62	-0.4
1,640,073	+		PFLU_RS07370	0.62	-1.4
1,640,073	+		PFLU_RS07370	0.62	-0.9
1,640,073	+		PFLU_RS07370	0.62	+0.7
1,640,074	-		PFLU_RS07370	0.62	-1.6
1,640,074	-		PFLU_RS07370	0.62	+0.9
1,640,241	+		PFLU_RS07370	0.75	+1.0
1,640,241	+		PFLU_RS07370	0.75	-0.2
1,640,242	-		PFLU_RS07370	0.75	-1.7
1,640,242	-		PFLU_RS07370	0.75	+1.0
1,640,242	-		PFLU_RS07370	0.75	+1.3
1,640,253	-		PFLU_RS07370	0.76	+0.0
1,640,319	+		PFLU_RS07370	0.80	+1.4
1,640,319	+		PFLU_RS07370	0.80	+1.0
1,640,319	+		PFLU_RS07370	0.80	+0.0
1,640,319	+		PFLU_RS07370	0.80	+1.1
1,640,320	-		PFLU_RS07370	0.81	-0.3
1,640,320	-		PFLU_RS07370	0.81	+1.3
1,640,320	-		PFLU_RS07370	0.81	-0.8
1,640,322	+		PFLU_RS07370	0.81	+0.0
1,640,322	+		PFLU_RS07370	0.81	+0.2
1,640,323	-		PFLU_RS07370	0.81	+0.7
1,640,323	-		PFLU_RS07370	0.81	+0.5
1,640,472	+				+0.1
1,640,473	-				-0.8
1,640,473	-				+0.8
1,640,473	-				-0.1
1,640,574	+				-0.2
1,640,574	+				-0.0
1,640,574	+				+0.7
1,640,575	-				+0.2
1,640,575	-				-0.3
1,640,575	-				+0.2
1,640,716	+				+0.1
1,640,717	-				+1.2
1,640,717	-				+0.2
1,640,717	-				+0.8
1,640,717	-				+0.2
1,640,800	+		PFLU_RS07375	0.13	-0.4
1,640,801	-		PFLU_RS07375	0.13	-1.3
1,640,833	+		PFLU_RS07375	0.15	-0.2
1,640,833	+		PFLU_RS07375	0.15	+2.2
1,640,833	+		PFLU_RS07375	0.15	+0.4
1,640,833	+		PFLU_RS07375	0.15	-0.8
1,640,833	+		PFLU_RS07375	0.15	+0.2
1,640,833	+		PFLU_RS07375	0.15	-0.3
1,640,833	+		PFLU_RS07375	0.15	+0.2
1,640,833	+		PFLU_RS07375	0.15	-2.7
1,640,833	+		PFLU_RS07375	0.15	+0.1
1,640,834	-		PFLU_RS07375	0.15	+0.6
1,640,834	-		PFLU_RS07375	0.15	+0.2
1,640,834	-		PFLU_RS07375	0.15	-0.1
1,640,834	-		PFLU_RS07375	0.15	-0.1
1,640,834	-		PFLU_RS07375	0.15	+0.9
1,640,834	-		PFLU_RS07375	0.15	-0.3
1,640,834	-		PFLU_RS07375	0.15	-0.9
1,640,965	+		PFLU_RS07375	0.25	-1.8
1,640,965	+		PFLU_RS07375	0.25	-0.9
1,640,965	+		PFLU_RS07375	0.25	-0.2
1,640,965	+		PFLU_RS07375	0.25	+0.7
1,640,965	+		PFLU_RS07375	0.25	-2.3
1,640,965	+		PFLU_RS07375	0.25	-0.1
1,640,965	+		PFLU_RS07375	0.25	+0.8
1,640,966	-		PFLU_RS07375	0.25	+1.4
1,640,966	-		PFLU_RS07375	0.25	+0.1
1,640,966	-		PFLU_RS07375	0.25	-0.1
1,640,966	-		PFLU_RS07375	0.25	+0.0
1,640,966	-		PFLU_RS07375	0.25	+0.9
1,641,026	-		PFLU_RS07375	0.30	+0.4
1,641,026	-		PFLU_RS07375	0.30	+0.1
1,641,026	-		PFLU_RS07375	0.30	-0.2
1,641,034	+		PFLU_RS07375	0.30	-0.3
1,641,035	-		PFLU_RS07375	0.30	+0.2
1,641,073	+		PFLU_RS07375	0.33	+0.9
1,641,074	-		PFLU_RS07375	0.33	-0.1
1,641,388	+		PFLU_RS07375	0.57	+1.7
1,641,388	+		PFLU_RS07375	0.57	-0.9
1,641,388	+		PFLU_RS07375	0.57	+0.8
1,641,389	-		PFLU_RS07375	0.57	+0.6
1,641,389	-		PFLU_RS07375	0.57	-0.5
1,641,408	+		PFLU_RS07375	0.59	-0.1
1,641,409	-		PFLU_RS07375	0.59	+0.2
1,641,409	-		PFLU_RS07375	0.59	+1.0
1,641,409	-		PFLU_RS07375	0.59	+0.3
1,641,409	-		PFLU_RS07375	0.59	-0.2
1,641,409	-		PFLU_RS07375	0.59	+1.1
1,641,412	+		PFLU_RS07375	0.59	+0.9
1,641,412	+		PFLU_RS07375	0.59	+2.8
1,641,412	+		PFLU_RS07375	0.59	-0.2
1,641,412	+		PFLU_RS07375	0.59	+0.2
1,641,412	+		PFLU_RS07375	0.59	+0.9
1,641,412	+		PFLU_RS07375	0.59	+0.1
1,641,412	+		PFLU_RS07375	0.59	-0.6
1,641,413	-		PFLU_RS07375	0.59	-2.3
1,641,413	-		PFLU_RS07375	0.59	+0.8
1,641,413	-		PFLU_RS07375	0.59	-0.0
1,641,413	-		PFLU_RS07375	0.59	+1.1
1,641,413	-		PFLU_RS07375	0.59	-1.4
1,641,413	-		PFLU_RS07375	0.59	+0.8
1,641,451	+		PFLU_RS07375	0.62	+0.5
1,641,524	+		PFLU_RS07375	0.67	-0.3
1,641,524	+		PFLU_RS07375	0.67	+0.9
1,641,525	-		PFLU_RS07375	0.67	-0.6