Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07240

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,613,352	+		PFLU_RS07230	0.44	-0.3
1,613,352	+		PFLU_RS07230	0.44	-1.3
1,613,352	+		PFLU_RS07230	0.44	+2.2
1,613,352	+		PFLU_RS07230	0.44	-1.4
1,613,352	+		PFLU_RS07230	0.44	+0.8
1,613,352	+		PFLU_RS07230	0.44	+0.7
1,613,352	+		PFLU_RS07230	0.44	-1.1
1,613,353	-		PFLU_RS07230	0.44	-0.1
1,613,353	-		PFLU_RS07230	0.44	+0.3
1,613,384	+		PFLU_RS07230	0.49	-2.3
1,613,392	+		PFLU_RS07230	0.51	+1.1
1,613,392	+		PFLU_RS07230	0.51	+0.4
1,613,392	+		PFLU_RS07230	0.51	+0.7
1,613,392	+		PFLU_RS07230	0.51	+0.7
1,613,392	+		PFLU_RS07230	0.51	+2.2
1,613,392	+		PFLU_RS07230	0.51	-0.1
1,613,392	+		PFLU_RS07230	0.51	-0.8
1,613,392	+		PFLU_RS07230	0.51	-0.2
1,613,393	-		PFLU_RS07230	0.51	-1.1
1,613,393	-		PFLU_RS07230	0.51	-0.5
1,613,393	-		PFLU_RS07230	0.51	+0.3
1,613,393	-		PFLU_RS07230	0.51	+0.5
1,613,393	-		PFLU_RS07230	0.51	-0.0
1,613,393	-		PFLU_RS07230	0.51	-1.8
1,613,393	-		PFLU_RS07230	0.51	+0.7
1,613,393	-		PFLU_RS07230	0.51	-0.1
1,613,415	+		PFLU_RS07230	0.55	-0.1
1,613,416	-		PFLU_RS07230	0.55	-1.3
1,613,525	-		PFLU_RS07230	0.74	-0.9
1,613,525	-		PFLU_RS07230	0.74	-1.0
1,613,528	+		PFLU_RS07230	0.74	-0.8
1,613,528	+		PFLU_RS07230	0.74	-1.1
1,613,529	-		PFLU_RS07230	0.74	-1.2
1,613,529	-		PFLU_RS07230	0.74	-0.5
1,613,542	+		PFLU_RS07230	0.76	+0.4
1,613,542	+		PFLU_RS07230	0.76	-0.2
1,613,543	-		PFLU_RS07230	0.77	-2.7
1,613,543	-		PFLU_RS07230	0.77	+1.7
1,613,566	-		PFLU_RS07230	0.81	-1.8
1,613,566	-		PFLU_RS07230	0.81	-2.4
1,613,608	+		PFLU_RS07230	0.88	+0.1
1,613,608	+		PFLU_RS07230	0.88	+0.0
1,613,608	+		PFLU_RS07230	0.88	-0.3
1,613,608	+		PFLU_RS07230	0.88	-0.1
1,613,608	+		PFLU_RS07230	0.88	-1.1
1,613,608	+		PFLU_RS07230	0.88	-1.8
1,613,609	-		PFLU_RS07230	0.88	-0.5
1,613,646	-				+1.9
1,613,676	+				+2.5
1,613,677	-				-0.5
1,613,677	-				+1.1
1,613,677	-				+1.5
1,613,677	-				+0.5
1,613,941	+		PFLU_RS07235	0.39	+0.5
1,613,941	+		PFLU_RS07235	0.39	-0.1
1,613,942	-		PFLU_RS07235	0.39	+0.5
1,613,942	-		PFLU_RS07235	0.39	-0.2
1,613,942	-		PFLU_RS07235	0.39	+1.7
1,613,942	-		PFLU_RS07235	0.39	+0.3
1,613,959	+		PFLU_RS07235	0.42	+0.6
1,613,959	+		PFLU_RS07235	0.42	+0.4
1,614,023	+		PFLU_RS07235	0.53	+2.1
1,614,023	+		PFLU_RS07235	0.53	+2.1
1,614,024	-		PFLU_RS07235	0.53	+3.0
1,614,266	+				+0.1
1,614,266	+				-0.5
1,614,267	-				-1.3
1,614,313	+				+1.1
1,614,313	+				-0.8
1,614,314	-				+0.2
1,614,335	-				+1.2
1,614,349	+				+0.1
1,614,349	+				-0.2
1,614,349	+				-0.5
1,614,349	+				+1.4
1,614,349	+				+0.1
1,614,349	+				+0.9
1,614,350	-				+1.2
1,614,350	-				-0.4
1,614,350	-				-0.3
1,614,350	-				+0.8
1,614,350	-				+1.5
1,614,350	-				+0.4
1,614,439	+		PFLU_RS07240	0.13	+1.0
1,614,439	+		PFLU_RS07240	0.13	+0.4
1,614,439	+		PFLU_RS07240	0.13	+0.7
1,614,439	+		PFLU_RS07240	0.13	+1.3
1,614,439	+		PFLU_RS07240	0.13	+0.1
1,614,440	-		PFLU_RS07240	0.13	+0.1
1,614,440	-		PFLU_RS07240	0.13	+0.2
1,614,440	-		PFLU_RS07240	0.13	-0.7
1,614,449	+		PFLU_RS07240	0.14	+0.1
1,614,458	-		PFLU_RS07240	0.15	-1.1
1,614,458	-		PFLU_RS07240	0.15	+0.3
1,614,571	+		PFLU_RS07240	0.27	+0.5
1,614,571	+		PFLU_RS07240	0.27	+1.7
1,614,572	-		PFLU_RS07240	0.27	+0.5
1,614,572	-		PFLU_RS07240	0.27	+0.0
1,614,665	+		PFLU_RS07240	0.36	-0.3
1,614,666	-		PFLU_RS07240	0.37	-2.1
1,614,721	-		PFLU_RS07240	0.42	+1.5
1,614,856	+		PFLU_RS07240	0.56	+0.5
1,614,867	+		PFLU_RS07240	0.57	+0.8
1,614,867	+		PFLU_RS07240	0.57	+1.7
1,614,892	+		PFLU_RS07240	0.60	+1.0
1,614,893	-		PFLU_RS07240	0.60	-0.7
1,614,893	-		PFLU_RS07240	0.60	+0.5
1,614,893	-		PFLU_RS07240	0.60	+0.1
1,614,893	-		PFLU_RS07240	0.60	+0.8
1,614,964	+		PFLU_RS07240	0.67	+1.1
1,614,964	+		PFLU_RS07240	0.67	-0.8
1,614,964	+		PFLU_RS07240	0.67	-1.0
1,614,964	+		PFLU_RS07240	0.67	-0.9
1,614,964	+		PFLU_RS07240	0.67	+0.0
1,614,964	+		PFLU_RS07240	0.67	+0.3
1,614,964	+		PFLU_RS07240	0.67	+0.7
1,614,965	-		PFLU_RS07240	0.68	-0.3
1,615,001	-		PFLU_RS07240	0.71	+0.3
1,615,052	+		PFLU_RS07240	0.77	+0.2
1,615,052	+		PFLU_RS07240	0.77	+0.3
1,615,052	+		PFLU_RS07240	0.77	-0.6
1,615,052	+		PFLU_RS07240	0.77	+0.6
1,615,052	+		PFLU_RS07240	0.77	+1.7
1,615,052	+		PFLU_RS07240	0.77	-0.3
1,615,052	+		PFLU_RS07240	0.77	+0.5
1,615,052	+		PFLU_RS07240	0.77	+0.0
1,615,053	-		PFLU_RS07240	0.77	-0.1
1,615,053	-		PFLU_RS07240	0.77	-0.7
1,615,053	-		PFLU_RS07240	0.77	+0.6
1,615,053	-		PFLU_RS07240	0.77	+0.3
1,615,053	-		PFLU_RS07240	0.77	-0.9
1,615,053	-		PFLU_RS07240	0.77	+0.3
1,615,053	-		PFLU_RS07240	0.77	+1.2
1,615,053	-		PFLU_RS07240	0.77	+0.4
1,615,165	+		PFLU_RS07240	0.88	-0.2
1,615,206	+				+1.3
1,615,206	+				-1.8
1,615,206	+				-0.7
1,615,207	-				-1.1
1,615,207	-				+0.8
1,615,288	+				-1.4
1,615,288	+				+1.5
1,615,288	+				-1.5
1,615,288	+				+0.2
1,615,288	+				+0.9
1,615,288	+				+1.7
1,615,288	+				-1.1
1,615,288	+				-1.2
1,615,288	+				+0.3
1,615,288	+				+0.0
1,615,288	+				-1.5
1,615,288	+				-1.0
1,615,288	+				+0.3
1,615,288	+				+0.1
1,615,288	+				+0.7
1,615,288	+				+1.1
1,615,289	-				-1.2
1,615,289	-				+0.5
1,615,289	-				-0.8
1,615,289	-				+0.1
1,615,289	-				+0.7
1,615,289	-				+1.5
1,615,289	-				+0.5
1,615,289	-				+0.8
1,615,289	-				+0.6
1,615,289	-				+0.8
1,615,289	-				+0.7
1,615,289	-				+1.5
1,615,312	+				+1.6
1,615,312	+				-0.6
1,615,312	+				-0.7
1,615,313	-				+0.6
1,615,313	-				-1.4
1,615,313	-				-1.7
1,615,313	-				-0.9
1,615,313	-				+0.1
1,615,392	+		PFLU_RS31440	0.48	-0.2
1,615,393	-		PFLU_RS31440	0.48	+1.2
1,615,393	-		PFLU_RS31440	0.48	-0.3
1,615,394	+		PFLU_RS31440	0.49	+0.7
1,615,394	+		PFLU_RS31440	0.49	+0.5
1,615,395	-		PFLU_RS31440	0.49	-0.7
1,615,395	-		PFLU_RS31440	0.49	-0.6
1,615,510	+				-0.2
1,615,510	+				+1.7
1,615,510	+				+0.4
1,615,510	+				+2.0
1,615,510	+				+0.4
1,615,510	+				-0.4
1,615,510	+				+0.2
1,615,510	+				-0.2
1,615,510	+				+0.0
1,615,510	+				+1.1
1,615,510	+				+1.5
1,615,510	+				+0.8
1,615,510	+				+0.9
1,615,510	+				-0.6
1,615,510	+				+0.3
1,615,510	+				-0.1
1,615,510	+				-0.2
1,615,511	-				+3.1
1,615,511	-				+1.5
1,615,511	-				-1.5
1,615,511	-				-0.2
1,615,511	-				-0.6
1,615,511	-				+0.3
1,615,511	-				-1.4
1,615,511	-				+0.1
1,615,511	-				+0.9
1,615,511	-				+0.3
1,615,535	+				-1.2
1,615,535	+				-1.3
1,615,535	+				-0.6
1,615,535	+				+0.2
1,615,535	+				+1.0
1,615,535	+				+0.2
1,615,535	+				-1.8
1,615,535	+				+1.3
1,615,536	-				-0.5
1,615,536	-				-3.3
1,615,536	-				-0.3
1,615,536	-				+0.8
1,615,536	-				+1.1
1,615,536	-				+1.3
1,615,536	-				-2.0
1,615,536	-				-0.1
1,615,536	-				+1.2
1,615,536	-				-1.2
1,615,539	+				-1.2
1,615,539	+				-1.2
1,615,539	+				+0.2
1,615,539	+				+1.5
1,615,540	-				-0.3
1,615,540	-				+0.3
1,615,540	-				-0.7
1,615,540	-				-0.0
1,615,540	-				-1.5
1,615,545	+				-0.3
1,615,546	-				-1.0
1,615,578	+				-1.2
1,615,578	+				-0.2
1,615,578	+				-1.1
1,615,648	+				+0.2
1,615,649	-				+0.2
1,615,649	-				-2.7
1,615,649	-				+1.7
1,615,655	-		PFLU_RS07245	0.10	-0.7
1,615,838	+		PFLU_RS07245	0.23	-1.1
1,615,838	+		PFLU_RS07245	0.23	-0.4
1,615,838	+		PFLU_RS07245	0.23	-0.2
1,615,838	+		PFLU_RS07245	0.23	-1.0
1,615,838	+		PFLU_RS07245	0.23	+1.9
1,615,839	-		PFLU_RS07245	0.23	+2.1
1,615,839	-		PFLU_RS07245	0.23	+0.1
1,615,839	-		PFLU_RS07245	0.23	-1.2
1,615,839	-		PFLU_RS07245	0.23	+0.7
1,615,839	-		PFLU_RS07245	0.23	-1.0
1,615,839	-		PFLU_RS07245	0.23	-1.3
1,615,839	-		PFLU_RS07245	0.23	-0.4
1,615,839	-		PFLU_RS07245	0.23	-0.1
1,615,839	-		PFLU_RS07245	0.23	-2.5
1,615,839	-		PFLU_RS07245	0.23	+0.6
1,615,840	+		PFLU_RS07245	0.23	+0.9
1,615,840	+		PFLU_RS07245	0.23	-0.5
1,615,841	-		PFLU_RS07245	0.23	+2.8
1,615,841	-		PFLU_RS07245	0.23	+0.3
1,616,000	-		PFLU_RS07245	0.34	-1.4
1,616,065	+		PFLU_RS07245	0.39	+0.5
1,616,065	+		PFLU_RS07245	0.39	+0.9
1,616,120	+		PFLU_RS07245	0.42	-0.7
1,616,120	+		PFLU_RS07245	0.42	-1.0
1,616,120	+		PFLU_RS07245	0.42	+1.8
1,616,120	+		PFLU_RS07245	0.42	+0.4
1,616,121	-		PFLU_RS07245	0.42	+0.1
1,616,121	-		PFLU_RS07245	0.42	-2.0
1,616,121	-		PFLU_RS07245	0.42	+0.8
1,616,121	-		PFLU_RS07245	0.42	-1.3
1,616,161	+		PFLU_RS07245	0.45	-0.5
1,616,161	+		PFLU_RS07245	0.45	-0.3
1,616,162	-		PFLU_RS07245	0.45	-0.1
1,616,222	+		PFLU_RS07245	0.49	-0.2
1,616,222	+		PFLU_RS07245	0.49	-1.5
1,616,222	+		PFLU_RS07245	0.49	-0.8
1,616,222	+		PFLU_RS07245	0.49	-2.1
1,616,223	-		PFLU_RS07245	0.50	-1.4
1,616,223	-		PFLU_RS07245	0.50	+0.3
1,616,223	-		PFLU_RS07245	0.50	-1.0
1,616,223	-		PFLU_RS07245	0.50	-1.0