Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05925

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS05920 and PFLU_RS05925 are separated by 65 nucleotidesPFLU_RS05925 and PFLU_RS05930 are separated by 62 nucleotidesPFLU_RS05930 and PFLU_RS05935 are separated by 3 nucleotides PFLU_RS05920: PFLU_RS05920 - LysR family transcriptional regulator, at 1,324,068 to 1,325,054 _RS05920 PFLU_RS05925: PFLU_RS05925 - ferredoxin--NADP reductase, at 1,325,120 to 1,325,899 _RS05925 PFLU_RS05930: PFLU_RS05930 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 1,325,962 to 1,326,657 _RS05930 PFLU_RS05935: PFLU_RS05935 - DUF1456 family protein, at 1,326,661 to 1,327,122 _RS05935 Position (kb) 1325 1326Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1324.165 kb on + strandat 1324.165 kb on + strandat 1324.166 kb on - strandat 1324.175 kb on + strand, within PFLU_RS05920at 1324.189 kb on + strand, within PFLU_RS05920at 1324.189 kb on + strand, within PFLU_RS05920at 1324.189 kb on + strand, within PFLU_RS05920at 1324.189 kb on + strand, within PFLU_RS05920at 1324.189 kb on + strand, within PFLU_RS05920at 1324.190 kb on - strand, within PFLU_RS05920at 1324.190 kb on - strand, within PFLU_RS05920at 1324.190 kb on - strand, within PFLU_RS05920at 1324.346 kb on + strand, within PFLU_RS05920at 1324.580 kb on - strand, within PFLU_RS05920at 1324.684 kb on + strand, within PFLU_RS05920at 1324.684 kb on + strand, within PFLU_RS05920at 1324.684 kb on + strand, within PFLU_RS05920at 1324.684 kb on + strand, within PFLU_RS05920at 1324.684 kb on + strand, within PFLU_RS05920at 1324.684 kb on + strand, within PFLU_RS05920at 1324.685 kb on - strand, within PFLU_RS05920at 1324.685 kb on - strand, within PFLU_RS05920at 1324.685 kb on - strand, within PFLU_RS05920at 1324.685 kb on - strand, within PFLU_RS05920at 1324.685 kb on - strand, within PFLU_RS05920at 1324.685 kb on - strand, within PFLU_RS05920at 1324.849 kb on - strand, within PFLU_RS05920at 1324.849 kb on - strand, within PFLU_RS05920at 1324.880 kb on + strand, within PFLU_RS05920at 1324.881 kb on - strand, within PFLU_RS05920at 1324.881 kb on - strand, within PFLU_RS05920at 1324.881 kb on - strand, within PFLU_RS05920at 1324.908 kb on + strand, within PFLU_RS05920at 1324.908 kb on + strand, within PFLU_RS05920at 1324.909 kb on - strand, within PFLU_RS05920at 1324.985 kb on + strandat 1324.986 kb on - strandat 1325.000 kb on + strandat 1325.021 kb on + strandat 1325.040 kb on + strandat 1325.055 kb on + strandat 1325.055 kb on + strandat 1325.056 kb on - strandat 1325.056 kb on - strandat 1325.897 kb on + strandat 1325.897 kb on + strandat 1325.898 kb on - strandat 1325.959 kb on + strandat 1325.967 kb on + strandat 1325.967 kb on + strandat 1325.967 kb on + strandat 1325.967 kb on + strandat 1325.967 kb on + strandat 1325.968 kb on - strandat 1325.968 kb on - strandat 1326.050 kb on + strand, within PFLU_RS05930at 1326.050 kb on + strand, within PFLU_RS05930at 1326.050 kb on + strand, within PFLU_RS05930at 1326.050 kb on + strand, within PFLU_RS05930at 1326.051 kb on - strand, within PFLU_RS05930at 1326.051 kb on - strand, within PFLU_RS05930at 1326.051 kb on - strand, within PFLU_RS05930at 1326.051 kb on - strand, within PFLU_RS05930at 1326.051 kb on - strand, within PFLU_RS05930at 1326.251 kb on + strand, within PFLU_RS05930at 1326.251 kb on + strand, within PFLU_RS05930at 1326.251 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.260 kb on + strand, within PFLU_RS05930at 1326.261 kb on - strand, within PFLU_RS05930at 1326.261 kb on - strand, within PFLU_RS05930at 1326.261 kb on - strand, within PFLU_RS05930at 1326.261 kb on - strand, within PFLU_RS05930at 1326.261 kb on - strand, within PFLU_RS05930at 1326.261 kb on - strand, within PFLU_RS05930at 1326.261 kb on - strand, within PFLU_RS05930at 1326.261 kb on - strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.490 kb on + strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.491 kb on - strand, within PFLU_RS05930at 1326.650 kb on + strandat 1326.650 kb on + strandat 1326.650 kb on + strandat 1326.651 kb on - strandat 1326.651 kb on - strandat 1326.651 kb on - strandat 1326.651 kb on - strandat 1326.651 kb on - strandat 1326.662 kb on + strandat 1326.700 kb on - strandat 1326.700 kb on - strandat 1326.729 kb on - strand, within PFLU_RS05935at 1326.729 kb on - strand, within PFLU_RS05935

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,324,165 + -0.3
1,324,165 + -0.0
1,324,166 - +0.6
1,324,175 + PFLU_RS05920 0.11 -0.1
1,324,189 + PFLU_RS05920 0.12 -1.1
1,324,189 + PFLU_RS05920 0.12 -1.0
1,324,189 + PFLU_RS05920 0.12 -0.1
1,324,189 + PFLU_RS05920 0.12 -0.3
1,324,189 + PFLU_RS05920 0.12 -0.3
1,324,190 - PFLU_RS05920 0.12 +0.9
1,324,190 - PFLU_RS05920 0.12 +0.0
1,324,190 - PFLU_RS05920 0.12 -0.0
1,324,346 + PFLU_RS05920 0.28 -0.1
1,324,580 - PFLU_RS05920 0.52 -1.1
1,324,684 + PFLU_RS05920 0.62 +1.0
1,324,684 + PFLU_RS05920 0.62 +0.2
1,324,684 + PFLU_RS05920 0.62 -0.3
1,324,684 + PFLU_RS05920 0.62 +2.1
1,324,684 + PFLU_RS05920 0.62 +0.3
1,324,684 + PFLU_RS05920 0.62 -0.6
1,324,685 - PFLU_RS05920 0.63 +0.2
1,324,685 - PFLU_RS05920 0.63 -0.4
1,324,685 - PFLU_RS05920 0.63 -0.8
1,324,685 - PFLU_RS05920 0.63 -0.3
1,324,685 - PFLU_RS05920 0.63 +1.0
1,324,685 - PFLU_RS05920 0.63 +0.8
1,324,849 - PFLU_RS05920 0.79 -0.4
1,324,849 - PFLU_RS05920 0.79 +0.3
1,324,880 + PFLU_RS05920 0.82 -0.8
1,324,881 - PFLU_RS05920 0.82 +0.3
1,324,881 - PFLU_RS05920 0.82 +0.5
1,324,881 - PFLU_RS05920 0.82 -2.1
1,324,908 + PFLU_RS05920 0.85 +1.2
1,324,908 + PFLU_RS05920 0.85 -0.0
1,324,909 - PFLU_RS05920 0.85 -0.0
1,324,985 + +2.5
1,324,986 - -0.8
1,325,000 + -0.6
1,325,021 + -1.2
1,325,040 + -2.0
1,325,055 + -0.8
1,325,055 + -0.8
1,325,056 - -2.0
1,325,056 - -1.8
1,325,897 + -2.5
1,325,897 + +1.6
1,325,898 - +0.1
1,325,959 + +0.1
1,325,967 + +1.5
1,325,967 + +0.8
1,325,967 + +1.2
1,325,967 + -1.1
1,325,967 + +0.1
1,325,968 - +0.4
1,325,968 - +0.6
1,326,050 + PFLU_RS05930 0.13 -1.0
1,326,050 + PFLU_RS05930 0.13 -2.0
1,326,050 + PFLU_RS05930 0.13 +1.9
1,326,050 + PFLU_RS05930 0.13 -1.3
1,326,051 - PFLU_RS05930 0.13 +0.3
1,326,051 - PFLU_RS05930 0.13 -0.3
1,326,051 - PFLU_RS05930 0.13 +1.9
1,326,051 - PFLU_RS05930 0.13 +0.4
1,326,051 - PFLU_RS05930 0.13 +0.4
1,326,251 + PFLU_RS05930 0.42 -0.6
1,326,251 + PFLU_RS05930 0.42 -0.4
1,326,251 + PFLU_RS05930 0.42 +0.7
1,326,260 + PFLU_RS05930 0.43 -1.0
1,326,260 + PFLU_RS05930 0.43 -1.9
1,326,260 + PFLU_RS05930 0.43 +1.1
1,326,260 + PFLU_RS05930 0.43 +0.1
1,326,260 + PFLU_RS05930 0.43 +0.2
1,326,260 + PFLU_RS05930 0.43 +1.7
1,326,260 + PFLU_RS05930 0.43 -0.1
1,326,260 + PFLU_RS05930 0.43 +1.1
1,326,260 + PFLU_RS05930 0.43 +0.9
1,326,260 + PFLU_RS05930 0.43 +0.7
1,326,261 - PFLU_RS05930 0.43 -0.1
1,326,261 - PFLU_RS05930 0.43 -0.2
1,326,261 - PFLU_RS05930 0.43 +3.3
1,326,261 - PFLU_RS05930 0.43 +0.8
1,326,261 - PFLU_RS05930 0.43 -0.7
1,326,261 - PFLU_RS05930 0.43 +0.2
1,326,261 - PFLU_RS05930 0.43 +0.4
1,326,261 - PFLU_RS05930 0.43 +0.1
1,326,490 + PFLU_RS05930 0.76 +0.3
1,326,490 + PFLU_RS05930 0.76 +0.0
1,326,490 + PFLU_RS05930 0.76 -0.0
1,326,490 + PFLU_RS05930 0.76 +0.3
1,326,490 + PFLU_RS05930 0.76 -1.7
1,326,490 + PFLU_RS05930 0.76 +0.9
1,326,490 + PFLU_RS05930 0.76 -1.3
1,326,490 + PFLU_RS05930 0.76 -0.1
1,326,490 + PFLU_RS05930 0.76 -0.0
1,326,490 + PFLU_RS05930 0.76 -0.9
1,326,490 + PFLU_RS05930 0.76 -0.3
1,326,490 + PFLU_RS05930 0.76 +0.8
1,326,490 + PFLU_RS05930 0.76 -1.2
1,326,490 + PFLU_RS05930 0.76 +0.8
1,326,490 + PFLU_RS05930 0.76 +0.4
1,326,490 + PFLU_RS05930 0.76 +0.4
1,326,490 + PFLU_RS05930 0.76 -0.3
1,326,490 + PFLU_RS05930 0.76 +0.3
1,326,490 + PFLU_RS05930 0.76 +0.6
1,326,490 + PFLU_RS05930 0.76 +1.5
1,326,490 + PFLU_RS05930 0.76 -0.7
1,326,490 + PFLU_RS05930 0.76 +0.5
1,326,491 - PFLU_RS05930 0.76 +0.7
1,326,491 - PFLU_RS05930 0.76 +0.4
1,326,491 - PFLU_RS05930 0.76 +0.1
1,326,491 - PFLU_RS05930 0.76 -2.7
1,326,491 - PFLU_RS05930 0.76 -0.3
1,326,491 - PFLU_RS05930 0.76 +0.7
1,326,491 - PFLU_RS05930 0.76 -0.3
1,326,491 - PFLU_RS05930 0.76 -1.6
1,326,491 - PFLU_RS05930 0.76 -1.0
1,326,491 - PFLU_RS05930 0.76 +0.5
1,326,491 - PFLU_RS05930 0.76 +0.3
1,326,491 - PFLU_RS05930 0.76 -1.2
1,326,491 - PFLU_RS05930 0.76 +0.7
1,326,491 - PFLU_RS05930 0.76 -0.6
1,326,491 - PFLU_RS05930 0.76 -0.5
1,326,491 - PFLU_RS05930 0.76 -0.9
1,326,491 - PFLU_RS05930 0.76 -0.7
1,326,491 - PFLU_RS05930 0.76 -0.1
1,326,491 - PFLU_RS05930 0.76 -0.9
1,326,491 - PFLU_RS05930 0.76 +0.7
1,326,491 - PFLU_RS05930 0.76 -1.7
1,326,491 - PFLU_RS05930 0.76 +0.6
1,326,491 - PFLU_RS05930 0.76 -0.7
1,326,491 - PFLU_RS05930 0.76 -0.6
1,326,491 - PFLU_RS05930 0.76 +2.2
1,326,491 - PFLU_RS05930 0.76 +0.6
1,326,491 - PFLU_RS05930 0.76 +1.1
1,326,650 + -0.7
1,326,650 + -0.3
1,326,650 + +0.2
1,326,651 - -0.1
1,326,651 - +0.6
1,326,651 - -1.1
1,326,651 - -2.0
1,326,651 - -0.4
1,326,662 + -0.9
1,326,700 - +0.1
1,326,700 - +0.7
1,326,729 - PFLU_RS05935 0.15 -0.8
1,326,729 - PFLU_RS05935 0.15 +1.1

Or see this region's nucleotide sequence