Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05540

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,246,351	+				+0.2
1,246,351	+				-0.4
1,246,351	+				+0.7
1,246,351	+				+0.1
1,246,351	+				+0.2
1,246,352	-				-2.0
1,246,352	-				+1.8
1,246,352	-				+0.1
1,246,352	-				-2.0
1,246,354	+				-2.6
1,246,407	+		PFLU_RS05530	0.16	-0.7
1,246,407	+		PFLU_RS05530	0.16	-0.2
1,246,407	+		PFLU_RS05530	0.16	-1.4
1,246,407	+		PFLU_RS05530	0.16	+1.3
1,246,407	+		PFLU_RS05530	0.16	-0.8
1,246,407	+		PFLU_RS05530	0.16	+0.6
1,246,407	+		PFLU_RS05530	0.16	-2.0
1,246,407	+		PFLU_RS05530	0.16	+0.8
1,246,408	-		PFLU_RS05530	0.16	+1.4
1,246,408	-		PFLU_RS05530	0.16	-0.0
1,246,408	-		PFLU_RS05530	0.16	+0.2
1,246,408	-		PFLU_RS05530	0.16	+1.1
1,246,408	-		PFLU_RS05530	0.16	+0.9
1,246,408	-		PFLU_RS05530	0.16	+1.0
1,246,408	-		PFLU_RS05530	0.16	-0.4
1,246,408	-		PFLU_RS05530	0.16	-1.5
1,246,408	-		PFLU_RS05530	0.16	-1.8
1,246,538	+		PFLU_RS05530	0.47	-0.7
1,246,653	+		PFLU_RS05530	0.75	+1.1
1,246,653	+		PFLU_RS05530	0.75	+0.5
1,246,654	-		PFLU_RS05530	0.75	+0.8
1,246,654	-		PFLU_RS05530	0.75	-0.2
1,246,654	-		PFLU_RS05530	0.75	-0.5
1,246,727	+				-0.6
1,246,761	+				+1.4
1,246,761	+				+1.0
1,246,761	+				-0.4
1,246,762	-				-1.6
1,246,976	-		PFLU_RS05535	0.42	+1.1
1,247,019	+		PFLU_RS05535	0.51	-0.2
1,247,019	+		PFLU_RS05535	0.51	+1.4
1,247,019	+		PFLU_RS05535	0.51	+1.4
1,247,020	-		PFLU_RS05535	0.51	-0.9
1,247,020	-		PFLU_RS05535	0.51	+2.1
1,247,020	-		PFLU_RS05535	0.51	+0.2
1,247,020	-		PFLU_RS05535	0.51	+0.5
1,247,023	+		PFLU_RS05535	0.51	-0.6
1,247,023	+		PFLU_RS05535	0.51	+0.9
1,247,023	+		PFLU_RS05535	0.51	-0.0
1,247,023	+		PFLU_RS05535	0.51	+0.4
1,247,023	+		PFLU_RS05535	0.51	-0.8
1,247,023	+		PFLU_RS05535	0.51	-0.2
1,247,023	+		PFLU_RS05535	0.51	+0.7
1,247,023	+		PFLU_RS05535	0.51	-0.7
1,247,023	+		PFLU_RS05535	0.51	+1.2
1,247,023	+		PFLU_RS05535	0.51	+1.1
1,247,023	+		PFLU_RS05535	0.51	+1.4
1,247,023	+		PFLU_RS05535	0.51	+0.0
1,247,023	+		PFLU_RS05535	0.51	+0.8
1,247,023	+		PFLU_RS05535	0.51	+0.5
1,247,023	+		PFLU_RS05535	0.51	+0.9
1,247,023	+		PFLU_RS05535	0.51	-1.3
1,247,023	+		PFLU_RS05535	0.51	-0.8
1,247,023	+		PFLU_RS05535	0.51	+0.5
1,247,023	+		PFLU_RS05535	0.51	+0.2
1,247,024	-		PFLU_RS05535	0.52	-1.3
1,247,024	-		PFLU_RS05535	0.52	-0.5
1,247,024	-		PFLU_RS05535	0.52	+0.3
1,247,024	-		PFLU_RS05535	0.52	+1.5
1,247,024	-		PFLU_RS05535	0.52	-1.9
1,247,024	-		PFLU_RS05535	0.52	-0.4
1,247,024	-		PFLU_RS05535	0.52	+0.2
1,247,024	-		PFLU_RS05535	0.52	-1.7
1,247,024	-		PFLU_RS05535	0.52	-0.5
1,247,024	-		PFLU_RS05535	0.52	+0.8
1,247,024	-		PFLU_RS05535	0.52	+1.2
1,247,162	-		PFLU_RS05535	0.79	+1.3
1,247,162	-		PFLU_RS05535	0.79	-0.2
1,247,185	+		PFLU_RS05535	0.83	-0.4
1,247,185	+		PFLU_RS05535	0.83	+0.5
1,247,186	-		PFLU_RS05535	0.84	-0.7
1,247,186	-		PFLU_RS05535	0.84	+0.6
1,247,224	+				+1.2
1,247,224	+				-2.7
1,247,224	+				+0.8
1,247,225	-				-0.5
1,247,225	-				+1.2
1,247,225	-				+0.5
1,247,269	+				-0.4
1,247,391	+				-1.4
1,247,391	+				-0.4
1,247,391	+				-0.1
1,247,391	+				+0.9
1,247,392	-				-0.9
1,247,392	-				-1.9
1,247,392	-				-1.6
1,247,393	+				-0.8
1,247,393	+				-1.1
1,247,393	+				-1.5
1,247,393	+				-1.9
1,247,393	+				-2.6
1,247,393	+				+0.2
1,247,394	-				+0.5
1,247,394	-				-1.7
1,247,394	-				-0.5
1,247,394	-				-0.5
1,247,429	+		PFLU_RS05540	0.12	+0.1
1,247,429	+		PFLU_RS05540	0.12	-3.2
1,247,429	+		PFLU_RS05540	0.12	-0.1
1,247,429	+		PFLU_RS05540	0.12	-1.0
1,247,430	-		PFLU_RS05540	0.12	-1.4
1,247,430	-		PFLU_RS05540	0.12	-1.2
1,247,430	-		PFLU_RS05540	0.12	-0.9
1,247,492	+		PFLU_RS05540	0.19	+0.5
1,247,492	+		PFLU_RS05540	0.19	-2.1
1,247,492	+		PFLU_RS05540	0.19	-2.3
1,247,492	+		PFLU_RS05540	0.19	-3.1
1,247,493	-		PFLU_RS05540	0.19	-0.9
1,247,696	+		PFLU_RS05540	0.41	-0.5
1,247,696	+		PFLU_RS05540	0.41	-0.5
1,247,696	+		PFLU_RS05540	0.41	-0.8
1,247,696	+		PFLU_RS05540	0.41	-0.7
1,247,696	+		PFLU_RS05540	0.41	-2.5
1,247,696	+		PFLU_RS05540	0.41	-2.9
1,247,696	+		PFLU_RS05540	0.41	-0.2
1,247,696	+		PFLU_RS05540	0.41	-1.0
1,247,696	+		PFLU_RS05540	0.41	-0.3
1,247,697	-		PFLU_RS05540	0.41	-1.5
1,247,697	-		PFLU_RS05540	0.41	-2.2
1,247,697	-		PFLU_RS05540	0.41	-1.6
1,247,697	-		PFLU_RS05540	0.41	-1.0
1,247,697	-		PFLU_RS05540	0.41	+0.8
1,247,697	-		PFLU_RS05540	0.41	-2.5
1,247,697	-		PFLU_RS05540	0.41	-1.5
1,247,697	-		PFLU_RS05540	0.41	-0.3
1,247,747	+		PFLU_RS05540	0.47	-0.1
1,247,747	+		PFLU_RS05540	0.47	-1.7
1,247,747	+		PFLU_RS05540	0.47	-1.4
1,247,747	+		PFLU_RS05540	0.47	-0.5
1,247,747	+		PFLU_RS05540	0.47	-1.1
1,247,748	-		PFLU_RS05540	0.47	-0.4
1,247,748	-		PFLU_RS05540	0.47	-1.1
1,247,748	-		PFLU_RS05540	0.47	-2.0
1,247,748	-		PFLU_RS05540	0.47	-1.7
1,247,748	-		PFLU_RS05540	0.47	-0.5
1,247,748	-		PFLU_RS05540	0.47	-2.1
1,247,748	-		PFLU_RS05540	0.47	-1.3
1,247,748	-		PFLU_RS05540	0.47	-0.5
1,247,765	+		PFLU_RS05540	0.48	-0.5
1,247,765	+		PFLU_RS05540	0.48	-1.6
1,247,765	+		PFLU_RS05540	0.48	-2.1
1,247,765	+		PFLU_RS05540	0.48	-0.6
1,247,765	+		PFLU_RS05540	0.48	-1.9
1,247,765	+		PFLU_RS05540	0.48	-0.3
1,247,765	+		PFLU_RS05540	0.48	-1.3
1,247,765	+		PFLU_RS05540	0.48	-1.1
1,247,765	+		PFLU_RS05540	0.48	+0.6
1,247,765	+		PFLU_RS05540	0.48	-0.4
1,247,765	+		PFLU_RS05540	0.48	-0.7
1,247,765	+		PFLU_RS05540	0.48	-0.6
1,247,765	+		PFLU_RS05540	0.48	-1.0
1,247,765	+		PFLU_RS05540	0.48	+0.5
1,247,765	+		PFLU_RS05540	0.48	-2.3
1,247,765	+		PFLU_RS05540	0.48	-2.3
1,247,765	+		PFLU_RS05540	0.48	-0.8
1,247,765	+		PFLU_RS05540	0.48	-1.6
1,247,766	-		PFLU_RS05540	0.49	-0.3
1,247,766	-		PFLU_RS05540	0.49	-2.2
1,247,766	-		PFLU_RS05540	0.49	-0.6
1,247,766	-		PFLU_RS05540	0.49	-0.9
1,247,766	-		PFLU_RS05540	0.49	-2.7
1,247,766	-		PFLU_RS05540	0.49	-2.1
1,247,766	-		PFLU_RS05540	0.49	-2.6
1,247,766	-		PFLU_RS05540	0.49	-1.8
1,247,766	-		PFLU_RS05540	0.49	-1.0
1,247,766	-		PFLU_RS05540	0.49	+0.1
1,247,766	-		PFLU_RS05540	0.49	-2.8
1,247,766	-		PFLU_RS05540	0.49	-1.5
1,247,766	-		PFLU_RS05540	0.49	-1.3
1,247,766	-		PFLU_RS05540	0.49	-1.3
1,247,766	-		PFLU_RS05540	0.49	-0.6
1,247,766	-		PFLU_RS05540	0.49	-2.0
1,247,766	-		PFLU_RS05540	0.49	-2.2
1,247,769	+		PFLU_RS05540	0.49	-1.2
1,247,769	+		PFLU_RS05540	0.49	-1.8
1,247,770	-		PFLU_RS05540	0.49	-0.2
1,247,770	-		PFLU_RS05540	0.49	-1.3
1,247,770	-		PFLU_RS05540	0.49	-1.5
1,247,770	-		PFLU_RS05540	0.49	-2.0
1,247,770	-		PFLU_RS05540	0.49	-2.2
1,247,770	-		PFLU_RS05540	0.49	-1.5
1,247,770	-		PFLU_RS05540	0.49	-2.4
1,248,232	+				-0.9
1,248,233	-				-0.1
1,248,233	-				-0.6
1,248,233	-				-2.9
1,248,233	-				-1.3
1,248,233	-				-0.5
1,248,370	+				+0.2
1,248,371	-				+1.0
1,248,507	+				+0.7
1,248,507	+				-1.3
1,248,507	+				-1.5
1,248,507	+				-0.7
1,248,508	-				-1.1
1,248,508	-				-0.1
1,248,568	-				+0.3
1,248,568	-				-0.1
1,248,599	+				+0.7
1,248,600	-				+0.4
1,248,628	+				-1.2
1,248,628	+				+1.1
1,248,635	+				+1.9
1,248,635	+				+0.4
1,248,636	-				+0.4
1,248,636	-				+0.5
1,248,649	+				+1.2
1,248,649	+				-0.3
1,248,650	-				+0.3
1,248,650	-				-0.8
1,248,773	+				+0.7
1,248,773	+				-0.5
1,248,773	+				-0.5
1,248,773	+				+0.9
1,248,773	+				-0.0
1,248,773	+				+1.0
1,248,773	+				+0.9
1,248,773	+				-0.2
1,248,773	+				-0.2
1,248,773	+				-0.4
1,248,774	-				+0.4
1,248,774	-				-0.3
1,248,774	-				-0.4
1,248,774	-				-0.0
1,248,774	-				+0.2
1,248,774	-				+1.0
1,248,774	-				-1.8
1,248,774	-				+1.6
1,248,774	-				-0.8
1,248,774	-				-0.9
1,248,775	+				-1.1
1,248,775	+				-0.5
1,248,775	+				-1.3
1,248,775	+				-0.2
1,248,775	+				+1.9
1,248,775	+				-0.2
1,248,775	+				+0.8
1,248,775	+				-0.0
1,248,775	+				+0.8
1,248,775	+				+0.4
1,248,775	+				-1.3
1,248,775	+				-3.4
1,248,776	-				+0.6
1,248,776	-				+0.1
1,248,776	-				-0.0
1,248,776	-				+0.5
1,248,776	-				-0.5
1,248,776	-				+0.6
1,248,776	-				-0.7
1,248,776	-				+0.5
1,248,776	-				-2.1
1,248,776	-				-0.2
1,248,776	-				+0.1
1,248,776	-				-0.2
1,248,776	-				+0.1
1,248,776	-				-1.8
1,248,776	-				+0.4
1,248,776	-				-0.9
1,248,776	-				-1.5
1,248,903	+		PFLU_RS05545	0.10	-0.1
1,248,903	+		PFLU_RS05545	0.10	+1.7
1,248,903	+		PFLU_RS05545	0.10	+0.4
1,248,903	+		PFLU_RS05545	0.10	-0.5
1,248,904	-		PFLU_RS05545	0.10	+2.2
1,248,904	-		PFLU_RS05545	0.10	-1.1
1,248,904	-		PFLU_RS05545	0.10	-0.6
1,248,904	-		PFLU_RS05545	0.10	-0.6
1,248,904	-		PFLU_RS05545	0.10	-2.4
1,249,002	+		PFLU_RS05545	0.12	+0.2
1,249,003	-		PFLU_RS05545	0.12	+0.5
1,249,003	-		PFLU_RS05545	0.12	-0.5
1,249,006	-		PFLU_RS05545	0.12	-0.2
1,249,065	+		PFLU_RS05545	0.13	+0.0
1,249,065	+		PFLU_RS05545	0.13	+0.7
1,249,066	-		PFLU_RS05545	0.13	+0.2
1,249,066	-		PFLU_RS05545	0.13	+0.2
1,249,066	-		PFLU_RS05545	0.13	+1.3
1,249,073	+		PFLU_RS05545	0.14	+0.5
1,249,156	+		PFLU_RS05545	0.15	+1.0
1,249,156	+		PFLU_RS05545	0.15	+2.6
1,249,156	+		PFLU_RS05545	0.15	-0.2