Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05210

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,159,378	+		PFLU_RS05205	0.45	+0.7
1,159,423	+		PFLU_RS05205	0.50	-0.5
1,159,423	+		PFLU_RS05205	0.50	+1.5
1,159,423	+		PFLU_RS05205	0.50	-0.4
1,159,423	+		PFLU_RS05205	0.50	+0.8
1,159,424	-		PFLU_RS05205	0.50	-0.0
1,159,424	-		PFLU_RS05205	0.50	+0.8
1,159,424	-		PFLU_RS05205	0.50	+0.1
1,159,424	-		PFLU_RS05205	0.50	+0.0
1,159,424	-		PFLU_RS05205	0.50	+0.9
1,159,424	-		PFLU_RS05205	0.50	-0.8
1,159,576	+		PFLU_RS05205	0.65	+0.5
1,159,577	-		PFLU_RS05205	0.65	-0.5
1,159,577	-		PFLU_RS05205	0.65	+0.7
1,159,711	+		PFLU_RS05205	0.78	-0.1
1,159,711	+		PFLU_RS05205	0.78	-1.5
1,159,711	+		PFLU_RS05205	0.78	+0.2
1,159,711	+		PFLU_RS05205	0.78	+0.8
1,159,711	+		PFLU_RS05205	0.78	-0.2
1,159,712	-		PFLU_RS05205	0.78	+0.3
1,159,712	-		PFLU_RS05205	0.78	-0.5
1,159,712	-		PFLU_RS05205	0.78	-0.3
1,159,792	+		PFLU_RS05205	0.86	+3.1
1,159,792	+		PFLU_RS05205	0.86	+0.7
1,159,792	+		PFLU_RS05205	0.86	-0.8
1,159,792	+		PFLU_RS05205	0.86	-1.8
1,159,792	+		PFLU_RS05205	0.86	+0.7
1,159,793	-		PFLU_RS05205	0.86	-0.0
1,159,793	-		PFLU_RS05205	0.86	-0.6
1,159,793	-		PFLU_RS05205	0.86	+1.4
1,159,793	-		PFLU_RS05205	0.86	-1.8
1,159,793	-		PFLU_RS05205	0.86	-0.0
1,159,793	-		PFLU_RS05205	0.86	+1.1
1,159,793	-		PFLU_RS05205	0.86	-0.6
1,159,928	+				+0.3
1,159,928	+				+0.8
1,159,928	+				+1.1
1,159,929	-				-2.2
1,160,046	+				+0.7
1,160,047	-				-0.7
1,160,066	+				+0.2
1,160,074	+				-1.0
1,160,074	+				+0.6
1,160,093	-				+1.3
1,160,096	+				+0.1
1,160,096	+				+0.4
1,160,096	+				+2.3
1,160,096	+				-0.6
1,160,096	+				+0.5
1,160,096	+				+1.5
1,160,096	+				+1.5
1,160,096	+				-0.2
1,160,096	+				+0.1
1,160,097	-				+0.8
1,160,097	-				-0.6
1,160,097	-				-0.7
1,160,097	-				-2.9
1,160,097	-				+0.3
1,160,097	-				-0.2
1,160,097	-				-0.8
1,160,097	-				-0.3
1,160,107	-				-0.4
1,160,125	+				-0.0
1,160,125	+				-1.5
1,160,126	-				-0.9
1,160,211	+				-1.1
1,160,211	+				-0.4
1,160,211	+				+0.3
1,160,211	+				+0.6
1,160,211	+				-0.6
1,160,211	+				+1.4
1,160,211	+				-0.6
1,160,211	+				+0.6
1,160,211	+				+1.6
1,160,211	+				-0.3
1,160,211	+				+0.7
1,160,211	+				-0.4
1,160,211	+				-0.8
1,160,211	+				+1.0
1,160,211	+				+0.6
1,160,211	+				+0.8
1,160,211	+				+1.4
1,160,211	+				+0.9
1,160,211	+				+1.1
1,160,211	+				+0.2
1,160,211	+				+0.4
1,160,211	+				-0.8
1,160,211	+				+0.0
1,160,211	+				+1.0
1,160,211	+				+0.5
1,160,211	+				+1.7
1,160,212	-				-2.6
1,160,212	-				-2.7
1,160,212	-				-1.4
1,160,212	-				-2.0
1,160,212	-				-1.2
1,160,212	-				-0.2
1,160,212	-				-2.6
1,160,212	-				-0.4
1,160,212	-				-0.4
1,160,212	-				-0.6
1,160,212	-				-1.6
1,160,212	-				-2.5
1,160,212	-				-0.2
1,160,212	-				-2.9
1,160,212	-				-0.7
1,160,212	-				-1.0
1,160,212	-				-1.7
1,160,212	-				-1.9
1,160,234	+				-0.4
1,160,235	-				-0.2
1,160,235	-				-1.5
1,160,297	-				-0.1
1,160,308	-				-2.6
1,160,330	+				+0.1
1,160,330	+				-1.2
1,160,330	+				+0.1
1,160,330	+				-2.8
1,160,330	+				+0.1
1,160,331	-				+0.1
1,160,331	-				-0.9
1,160,333	+				+0.1
1,160,333	+				-1.2
1,160,333	+				+0.4
1,160,333	+				-2.1
1,160,334	-				-1.6
1,160,334	-				-1.4
1,160,334	-				-1.6
1,160,334	-				-2.2
1,160,334	-				-3.9
1,160,334	-				-0.3
1,160,334	-				-1.8
1,160,334	-				-1.3
1,160,336	+				-0.5
1,160,336	+				-2.9
1,160,337	-				+0.2
1,160,337	-				-2.9
1,160,337	-				+1.0
1,160,337	-				-2.9
1,160,371	+		PFLU_RS05210	0.16	-1.6
1,160,372	-		PFLU_RS05210	0.17	-2.5
1,160,597	+				-1.3
1,160,604	+				-0.5
1,160,604	+				-1.4
1,160,604	+				-1.2
1,160,605	-				+0.6
1,160,605	-				-2.3
1,160,605	-				-0.6
1,160,605	-				-1.8
1,160,605	-				+0.4
1,160,605	-				+0.0
1,160,605	-				-1.4
1,160,668	+				+0.2
1,160,668	+				+0.6
1,160,668	+				-0.8
1,160,668	+				-0.7
1,160,669	-				+0.6
1,160,669	-				-0.7
1,160,673	+				-0.7
1,160,674	-				+0.4
1,160,674	-				+0.3
1,160,674	-				+0.4
1,160,674	-				-0.8
1,160,674	-				+0.5
1,160,674	-				+1.0
1,160,674	-				-0.0
1,160,674	-				-0.2
1,160,674	-				-0.8
1,160,674	-				+0.2
1,160,674	-				-1.0
1,160,674	-				+0.5
1,161,346	+		PFLU_RS05215	0.56	-0.4
1,161,346	+		PFLU_RS05215	0.56	+1.5
1,161,347	-		PFLU_RS05215	0.56	+0.4
1,161,347	-		PFLU_RS05215	0.56	+0.6
1,161,466	+		PFLU_RS05215	0.68	-1.0
1,161,466	+		PFLU_RS05215	0.68	-0.7
1,161,466	+		PFLU_RS05215	0.68	+0.1
1,161,466	+		PFLU_RS05215	0.68	-0.2
1,161,466	+		PFLU_RS05215	0.68	+0.3
1,161,466	+		PFLU_RS05215	0.68	+0.3
1,161,466	+		PFLU_RS05215	0.68	-0.4
1,161,467	-		PFLU_RS05215	0.68	-0.4
1,161,500	-		PFLU_RS05215	0.71	-0.6
1,161,532	+		PFLU_RS05215	0.75	+0.4
1,161,532	+		PFLU_RS05215	0.75	-0.5
1,161,532	+		PFLU_RS05215	0.75	-0.8
1,161,532	+		PFLU_RS05215	0.75	+0.5
1,161,532	+		PFLU_RS05215	0.75	+0.9
1,161,533	-		PFLU_RS05215	0.75	-0.2
1,161,533	-		PFLU_RS05215	0.75	+0.3
1,161,533	-		PFLU_RS05215	0.75	-0.4
1,161,533	-		PFLU_RS05215	0.75	+0.3
1,161,533	-		PFLU_RS05215	0.75	-1.1
1,161,533	-		PFLU_RS05215	0.75	+0.4
1,161,533	-		PFLU_RS05215	0.75	+1.2
1,161,533	-		PFLU_RS05215	0.75	+1.8
1,161,533	-		PFLU_RS05215	0.75	+0.3
1,161,533	-		PFLU_RS05215	0.75	-0.2
1,161,533	-		PFLU_RS05215	0.75	-0.4
1,161,533	-		PFLU_RS05215	0.75	-0.8
1,161,533	-		PFLU_RS05215	0.75	+0.8