Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02880 and PFLU_RS02885 are separated by 30 nucleotides PFLU_RS02885 and PFLU_RS02890 are separated by 50 nucleotides PFLU_RS02890 and PFLU_RS02895 are separated by 8 nucleotides
PFLU_RS02880: PFLU_RS02880 - urease accessory protein UreD, at 660,481 to 661,320
_RS02880
PFLU_RS02885: PFLU_RS02885 - urea ABC transporter ATP-binding subunit UrtE, at 661,351 to 662,049
_RS02885
PFLU_RS02890: PFLU_RS02890 - urea ABC transporter ATP-binding protein UrtD, at 662,100 to 662,921
_RS02890
PFLU_RS02895: PFLU_RS02895 - urea ABC transporter permease subunit UrtC, at 662,930 to 663,997
_RS02895
Position (kb) 662
663 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 661.150 kb on - strand, within PFLU_RS02880 at 661.181 kb on + strand, within PFLU_RS02880 at 661.331 kb on + strand at 661.345 kb on + strand at 661.352 kb on + strand at 661.352 kb on + strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.389 kb on + strand at 661.439 kb on + strand, within PFLU_RS02885 at 661.439 kb on + strand, within PFLU_RS02885 at 661.700 kb on + strand, within PFLU_RS02885 at 661.700 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.812 kb on - strand, within PFLU_RS02885 at 661.812 kb on - strand, within PFLU_RS02885 at 661.812 kb on - strand, within PFLU_RS02885 at 661.812 kb on - strand, within PFLU_RS02885 at 662.022 kb on - strand at 662.049 kb on + strand at 662.049 kb on + strand at 662.049 kb on + strand at 662.049 kb on + strand at 662.049 kb on + strand at 662.093 kb on + strand at 662.093 kb on + strand at 662.093 kb on + strand at 662.093 kb on + strand at 662.093 kb on + strand at 662.094 kb on - strand at 662.094 kb on - strand at 662.094 kb on - strand at 662.094 kb on - strand at 662.113 kb on + strand at 662.113 kb on + strand at 662.114 kb on - strand at 662.762 kb on - strand, within PFLU_RS02890 at 662.762 kb on - strand, within PFLU_RS02890 at 662.762 kb on - strand, within PFLU_RS02890 at 662.967 kb on + strand at 662.967 kb on + strand at 662.967 kb on + strand at 663.031 kb on + strand at 663.180 kb on + strand, within PFLU_RS02895 at 663.180 kb on + strand, within PFLU_RS02895 at 663.180 kb on + strand, within PFLU_RS02895 at 663.180 kb on + strand, within PFLU_RS02895 at 663.180 kb on + strand, within PFLU_RS02895 at 663.180 kb on + strand, within PFLU_RS02895 at 663.180 kb on + strand, within PFLU_RS02895 at 663.180 kb on + strand, within PFLU_RS02895 at 663.180 kb on + strand, within PFLU_RS02895 at 663.180 kb on + strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.181 kb on - strand, within PFLU_RS02895 at 663.525 kb on + strand, within PFLU_RS02895 at 663.525 kb on + strand, within PFLU_RS02895 at 663.639 kb on + strand, within PFLU_RS02895 at 663.714 kb on + strand, within PFLU_RS02895 at 663.714 kb on + strand, within PFLU_RS02895 at 663.714 kb on + strand, within PFLU_RS02895 at 663.714 kb on + strand, within PFLU_RS02895 at 663.714 kb on + strand, within PFLU_RS02895 at 663.715 kb on - strand, within PFLU_RS02895 at 663.715 kb on - strand, within PFLU_RS02895 at 663.715 kb on - strand, within PFLU_RS02895 at 663.715 kb on - strand, within PFLU_RS02895 at 663.715 kb on - strand, within PFLU_RS02895 at 663.715 kb on - strand, within PFLU_RS02895 at 663.819 kb on + strand, within PFLU_RS02895 at 663.819 kb on + strand, within PFLU_RS02895
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 661,150 - PFLU_RS02880 0.80 -0.2 661,181 + PFLU_RS02880 0.83 -0.3 661,331 + +0.7 661,345 + +0.1 661,352 + -0.1 661,352 + -0.2 661,353 - +0.2 661,353 - +0.9 661,353 - +0.3 661,372 + -0.6 661,372 + +0.4 661,372 + -1.0 661,372 + -0.2 661,372 + +0.1 661,372 + +0.4 661,372 + -0.4 661,372 + -0.9 661,372 + +1.2 661,373 - +1.0 661,373 - -2.0 661,373 - +1.2 661,373 - -0.5 661,373 - -0.2 661,373 - -3.2 661,373 - -1.2 661,373 - +0.1 661,373 - +0.4 661,373 - -0.5 661,389 + -0.4 661,439 + PFLU_RS02885 0.13 -0.4 661,439 + PFLU_RS02885 0.13 +0.1 661,700 + PFLU_RS02885 0.50 +1.1 661,700 + PFLU_RS02885 0.50 -0.1 661,811 + PFLU_RS02885 0.66 -1.0 661,811 + PFLU_RS02885 0.66 -0.6 661,812 - PFLU_RS02885 0.66 +1.2 661,812 - PFLU_RS02885 0.66 -0.2 661,812 - PFLU_RS02885 0.66 +1.1 661,812 - PFLU_RS02885 0.66 -0.7 662,022 - +0.1 662,049 + +0.5 662,049 + -2.5 662,049 + -1.8 662,049 + +0.2 662,049 + +0.4 662,093 + +1.5 662,093 + +0.7 662,093 + +0.9 662,093 + -1.6 662,093 + -0.0 662,094 - -0.5 662,094 - +1.0 662,094 - +0.9 662,094 - +0.8 662,113 + +1.1 662,113 + +0.2 662,114 - +1.0 662,762 - PFLU_RS02890 0.81 +0.8 662,762 - PFLU_RS02890 0.81 +1.2 662,762 - PFLU_RS02890 0.81 +0.7 662,967 + -0.0 662,967 + +0.7 662,967 + +0.5 663,031 + -2.5 663,180 + PFLU_RS02895 0.23 -0.3 663,180 + PFLU_RS02895 0.23 +0.5 663,180 + PFLU_RS02895 0.23 +0.9 663,180 + PFLU_RS02895 0.23 +0.7 663,180 + PFLU_RS02895 0.23 +0.2 663,180 + PFLU_RS02895 0.23 -0.0 663,180 + PFLU_RS02895 0.23 +0.5 663,180 + PFLU_RS02895 0.23 -1.1 663,180 + PFLU_RS02895 0.23 +0.4 663,180 + PFLU_RS02895 0.23 +0.0 663,181 - PFLU_RS02895 0.24 -1.0 663,181 - PFLU_RS02895 0.24 +2.1 663,181 - PFLU_RS02895 0.24 -0.5 663,181 - PFLU_RS02895 0.24 +0.7 663,181 - PFLU_RS02895 0.24 +0.3 663,181 - PFLU_RS02895 0.24 +0.5 663,181 - PFLU_RS02895 0.24 +1.3 663,181 - PFLU_RS02895 0.24 +0.7 663,181 - PFLU_RS02895 0.24 -0.0 663,181 - PFLU_RS02895 0.24 -0.1 663,181 - PFLU_RS02895 0.24 -0.3 663,181 - PFLU_RS02895 0.24 -0.2 663,525 + PFLU_RS02895 0.56 -0.2 663,525 + PFLU_RS02895 0.56 -0.2 663,639 + PFLU_RS02895 0.66 +0.5 663,714 + PFLU_RS02895 0.73 +1.1 663,714 + PFLU_RS02895 0.73 -1.9 663,714 + PFLU_RS02895 0.73 -0.0 663,714 + PFLU_RS02895 0.73 -0.9 663,714 + PFLU_RS02895 0.73 +0.4 663,715 - PFLU_RS02895 0.74 +0.6 663,715 - PFLU_RS02895 0.74 +0.6 663,715 - PFLU_RS02895 0.74 +0.6 663,715 - PFLU_RS02895 0.74 -0.7 663,715 - PFLU_RS02895 0.74 -0.4 663,715 - PFLU_RS02895 0.74 +1.2 663,819 + PFLU_RS02895 0.83 -0.4 663,819 + PFLU_RS02895 0.83 -0.1
Or see this region's nucleotide sequence