Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02650

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS02640 and PFLU_RS02645 are separated by 36 nucleotidesPFLU_RS02645 and PFLU_RS02650 are separated by 18 nucleotidesPFLU_RS02650 and PFLU_RS02655 are separated by 110 nucleotides PFLU_RS02640: PFLU_RS02640 - 30S ribosomal protein S18, at 606,076 to 606,306 _RS02640 PFLU_RS02645: PFLU_RS02645 - hypothetical protein, at 606,343 to 607,236 _RS02645 PFLU_RS02650: PFLU_RS02650 - 50S ribosomal protein L9, at 607,255 to 607,701 _RS02650 PFLU_RS02655: PFLU_RS02655 - replicative DNA helicase, at 607,812 to 609,209 _RS02655 Position (kb) 607 608Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 606.283 kb on + strand, within PFLU_RS02640at 606.325 kb on + strandat 606.325 kb on + strandat 606.325 kb on + strandat 606.325 kb on + strandat 606.325 kb on + strandat 606.325 kb on + strandat 606.325 kb on + strandat 606.325 kb on + strandat 606.325 kb on + strandat 606.325 kb on + strandat 606.328 kb on + strandat 606.328 kb on + strandat 606.328 kb on + strandat 606.427 kb on + strandat 606.427 kb on + strandat 606.427 kb on + strandat 606.427 kb on + strandat 606.427 kb on + strandat 606.554 kb on + strand, within PFLU_RS02645at 606.748 kb on + strand, within PFLU_RS02645at 606.748 kb on + strand, within PFLU_RS02645at 606.868 kb on + strand, within PFLU_RS02645at 606.886 kb on + strand, within PFLU_RS02645at 607.022 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.105 kb on + strand, within PFLU_RS02645at 607.106 kb on - strand, within PFLU_RS02645at 607.106 kb on - strand, within PFLU_RS02645at 607.106 kb on - strand, within PFLU_RS02645at 607.106 kb on - strand, within PFLU_RS02645at 607.106 kb on - strand, within PFLU_RS02645at 607.106 kb on - strand, within PFLU_RS02645at 607.106 kb on - strand, within PFLU_RS02645at 607.106 kb on - strand, within PFLU_RS02645at 607.234 kb on + strandat 607.234 kb on + strandat 607.234 kb on + strandat 607.235 kb on - strandat 607.339 kb on + strand, within PFLU_RS02650at 607.339 kb on + strand, within PFLU_RS02650at 607.340 kb on - strand, within PFLU_RS02650at 607.488 kb on + strand, within PFLU_RS02650at 607.640 kb on + strand, within PFLU_RS02650at 607.641 kb on - strand, within PFLU_RS02650at 607.676 kb on + strandat 607.677 kb on - strandat 607.699 kb on + strandat 607.700 kb on - strandat 607.710 kb on + strandat 607.710 kb on + strandat 607.710 kb on + strandat 607.710 kb on + strandat 607.710 kb on + strandat 607.741 kb on + strandat 607.741 kb on + strandat 607.741 kb on + strandat 607.741 kb on + strandat 607.741 kb on + strandat 607.787 kb on + strandat 607.787 kb on + strandat 607.787 kb on + strandat 607.797 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
606,283 + PFLU_RS02640 0.90 +2.3
606,325 + -0.1
606,325 + +1.2
606,325 + +0.4
606,325 + +1.0
606,325 + -0.7
606,325 + -0.6
606,325 + +0.4
606,325 + -0.0
606,325 + +0.4
606,325 + -0.0
606,328 + -1.5
606,328 + +2.0
606,328 + -1.6
606,427 + -0.0
606,427 + -1.6
606,427 + -1.3
606,427 + -0.8
606,427 + -0.8
606,554 + PFLU_RS02645 0.24 +1.0
606,748 + PFLU_RS02645 0.45 +1.1
606,748 + PFLU_RS02645 0.45 -1.0
606,868 + PFLU_RS02645 0.59 +0.4
606,886 + PFLU_RS02645 0.61 +0.1
607,022 + PFLU_RS02645 0.76 +0.3
607,105 + PFLU_RS02645 0.85 +0.9
607,105 + PFLU_RS02645 0.85 -0.2
607,105 + PFLU_RS02645 0.85 +0.3
607,105 + PFLU_RS02645 0.85 +1.5
607,105 + PFLU_RS02645 0.85 -2.6
607,105 + PFLU_RS02645 0.85 +2.3
607,105 + PFLU_RS02645 0.85 -1.7
607,105 + PFLU_RS02645 0.85 +0.7
607,105 + PFLU_RS02645 0.85 -0.2
607,105 + PFLU_RS02645 0.85 +0.8
607,105 + PFLU_RS02645 0.85 +0.3
607,105 + PFLU_RS02645 0.85 -1.7
607,105 + PFLU_RS02645 0.85 -1.1
607,105 + PFLU_RS02645 0.85 +0.3
607,105 + PFLU_RS02645 0.85 +0.2
607,105 + PFLU_RS02645 0.85 -0.7
607,105 + PFLU_RS02645 0.85 +0.1
607,105 + PFLU_RS02645 0.85 +0.5
607,105 + PFLU_RS02645 0.85 +0.3
607,105 + PFLU_RS02645 0.85 -0.7
607,105 + PFLU_RS02645 0.85 -0.8
607,105 + PFLU_RS02645 0.85 -0.7
607,105 + PFLU_RS02645 0.85 +1.2
607,105 + PFLU_RS02645 0.85 +0.2
607,105 + PFLU_RS02645 0.85 -1.8
607,105 + PFLU_RS02645 0.85 +0.4
607,105 + PFLU_RS02645 0.85 +0.3
607,105 + PFLU_RS02645 0.85 -1.3
607,105 + PFLU_RS02645 0.85 -0.3
607,105 + PFLU_RS02645 0.85 +1.0
607,105 + PFLU_RS02645 0.85 +0.5
607,105 + PFLU_RS02645 0.85 -0.1
607,105 + PFLU_RS02645 0.85 -0.2
607,106 - PFLU_RS02645 0.85 +2.0
607,106 - PFLU_RS02645 0.85 +2.0
607,106 - PFLU_RS02645 0.85 +4.0
607,106 - PFLU_RS02645 0.85 +0.4
607,106 - PFLU_RS02645 0.85 +0.4
607,106 - PFLU_RS02645 0.85 +2.0
607,106 - PFLU_RS02645 0.85 -0.3
607,106 - PFLU_RS02645 0.85 +2.0
607,234 + +0.0
607,234 + +0.4
607,234 + +0.2
607,235 - +0.4
607,339 + PFLU_RS02650 0.19 +1.0
607,339 + PFLU_RS02650 0.19 -0.3
607,340 - PFLU_RS02650 0.19 +2.7
607,488 + PFLU_RS02650 0.52 -0.0
607,640 + PFLU_RS02650 0.86 +2.4
607,641 - PFLU_RS02650 0.86 +1.0
607,676 + +2.0
607,677 - +0.4
607,699 + -0.0
607,700 - -0.0
607,710 + +2.0
607,710 + -0.8
607,710 + +1.0
607,710 + +1.0
607,710 + +2.0
607,741 + -1.0
607,741 + +0.3
607,741 + +3.6
607,741 + +2.0
607,741 + -0.6
607,787 + +0.7
607,787 + -2.1
607,787 + +0.9
607,797 + -0.5

Or see this region's nucleotide sequence