Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01405

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS01400 and PFLU_RS01405 overlap by 4 nucleotidesPFLU_RS01405 and PFLU_RS01410 are separated by 36 nucleotidesPFLU_RS01410 and PFLU_RS01415 overlap by 4 nucleotides PFLU_RS01400: PFLU_RS01400 - sigma-54-dependent Fis family transcriptional regulator, at 309,839 to 311,215 _RS01400 PFLU_RS01405: PFLU_RS01405 - sensor histidine kinase, at 311,212 to 313,020 _RS01405 PFLU_RS01410: PFLU_RS01410 - dTDP-4-dehydrorhamnose reductase, at 313,057 to 313,926 _RS01410 PFLU_RS01415: PFLU_RS01415 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 313,923 to 314,468 _RS01415 Position (kb) 311 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.911 kb on + strand, within PFLU_RS01400at 311.209 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.215 kb on + strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.216 kb on - strandat 311.394 kb on + strand, within PFLU_RS01405at 311.394 kb on + strand, within PFLU_RS01405at 311.395 kb on - strand, within PFLU_RS01405at 311.395 kb on - strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.396 kb on + strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.397 kb on - strand, within PFLU_RS01405at 311.459 kb on + strand, within PFLU_RS01405at 311.459 kb on + strand, within PFLU_RS01405at 311.460 kb on - strand, within PFLU_RS01405at 311.460 kb on - strand, within PFLU_RS01405at 311.460 kb on - strand, within PFLU_RS01405at 311.460 kb on - strand, within PFLU_RS01405at 312.101 kb on + strand, within PFLU_RS01405at 312.101 kb on + strand, within PFLU_RS01405at 312.102 kb on - strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.180 kb on + strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405at 312.181 kb on - strand, within PFLU_RS01405at 312.312 kb on - strand, within PFLU_RS01405at 312.412 kb on - strand, within PFLU_RS01405at 312.536 kb on + strand, within PFLU_RS01405at 312.536 kb on + strand, within PFLU_RS01405at 312.536 kb on + strand, within PFLU_RS01405at 312.698 kb on + strand, within PFLU_RS01405at 312.698 kb on + strand, within PFLU_RS01405at 312.698 kb on + strand, within PFLU_RS01405at 312.698 kb on + strand, within PFLU_RS01405at 312.699 kb on - strand, within PFLU_RS01405at 312.699 kb on - strand, within PFLU_RS01405at 312.837 kb on - strand, within PFLU_RS01405at 312.869 kb on + strandat 312.869 kb on + strandat 312.870 kb on - strandat 312.870 kb on - strandat 312.870 kb on - strandat 312.870 kb on - strandat 312.870 kb on - strandat 312.870 kb on - strandat 312.917 kb on + strandat 312.917 kb on + strandat 312.917 kb on + strandat 312.917 kb on + strandat 313.052 kb on + strandat 313.052 kb on + strandat 313.052 kb on + strandat 313.059 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
310,299 + PFLU_RS01400 0.33 -0.8
310,299 + PFLU_RS01400 0.33 +0.4
310,299 + PFLU_RS01400 0.33 -1.0
310,299 + PFLU_RS01400 0.33 -3.1
310,299 + PFLU_RS01400 0.33 +0.4
310,299 + PFLU_RS01400 0.33 +0.6
310,299 + PFLU_RS01400 0.33 +0.3
310,300 - PFLU_RS01400 0.33 +1.8
310,300 - PFLU_RS01400 0.33 -0.4
310,300 - PFLU_RS01400 0.33 +1.0
310,300 - PFLU_RS01400 0.33 +0.8
310,300 - PFLU_RS01400 0.33 -0.1
310,300 - PFLU_RS01400 0.33 +0.1
310,300 - PFLU_RS01400 0.33 +1.3
310,300 - PFLU_RS01400 0.33 +0.1
310,300 - PFLU_RS01400 0.33 -1.3
310,300 - PFLU_RS01400 0.33 -1.8
310,448 + PFLU_RS01400 0.44 -3.1
310,448 + PFLU_RS01400 0.44 +0.3
310,448 + PFLU_RS01400 0.44 -0.6
310,448 + PFLU_RS01400 0.44 +0.6
310,448 + PFLU_RS01400 0.44 -1.2
310,448 + PFLU_RS01400 0.44 +1.6
310,448 + PFLU_RS01400 0.44 -0.3
310,448 + PFLU_RS01400 0.44 -1.8
310,448 + PFLU_RS01400 0.44 +0.5
310,449 - PFLU_RS01400 0.44 +0.0
310,449 - PFLU_RS01400 0.44 +0.0
310,449 - PFLU_RS01400 0.44 +1.0
310,449 - PFLU_RS01400 0.44 -1.3
310,449 - PFLU_RS01400 0.44 +0.5
310,449 - PFLU_RS01400 0.44 +0.4
310,449 - PFLU_RS01400 0.44 -0.2
310,911 + PFLU_RS01400 0.78 +0.2
311,209 + +2.6
311,215 + +0.0
311,215 + -1.3
311,215 + +0.3
311,215 + -0.6
311,215 + -0.2
311,215 + -0.5
311,215 + -0.5
311,215 + -0.4
311,215 + +0.2
311,215 + -0.6
311,215 + +0.1
311,215 + +0.1
311,215 + -0.2
311,215 + -0.7
311,215 + -1.4
311,216 - +0.3
311,216 - +1.3
311,216 - -0.0
311,216 - -0.3
311,216 - -0.7
311,216 - +1.3
311,216 - +0.1
311,216 - -0.2
311,216 - -0.5
311,216 - +0.0
311,216 - +0.3
311,216 - -0.4
311,216 - +0.1
311,216 - -0.5
311,394 + PFLU_RS01405 0.10 +0.3
311,394 + PFLU_RS01405 0.10 -0.2
311,395 - PFLU_RS01405 0.10 +2.5
311,395 - PFLU_RS01405 0.10 +2.5
311,396 + PFLU_RS01405 0.10 +1.2
311,396 + PFLU_RS01405 0.10 +0.2
311,396 + PFLU_RS01405 0.10 -0.5
311,396 + PFLU_RS01405 0.10 +0.5
311,396 + PFLU_RS01405 0.10 +1.5
311,396 + PFLU_RS01405 0.10 +0.3
311,397 - PFLU_RS01405 0.10 +2.9
311,397 - PFLU_RS01405 0.10 +1.7
311,397 - PFLU_RS01405 0.10 +1.9
311,397 - PFLU_RS01405 0.10 +2.8
311,397 - PFLU_RS01405 0.10 +1.4
311,459 + PFLU_RS01405 0.14 +1.4
311,459 + PFLU_RS01405 0.14 +0.6
311,460 - PFLU_RS01405 0.14 +1.2
311,460 - PFLU_RS01405 0.14 -0.2
311,460 - PFLU_RS01405 0.14 +2.1
311,460 - PFLU_RS01405 0.14 +0.7
312,101 + PFLU_RS01405 0.49 +1.8
312,101 + PFLU_RS01405 0.49 -0.6
312,102 - PFLU_RS01405 0.49 +1.3
312,180 + PFLU_RS01405 0.54 -1.6
312,180 + PFLU_RS01405 0.54 +0.5
312,180 + PFLU_RS01405 0.54 +0.8
312,180 + PFLU_RS01405 0.54 -0.1
312,180 + PFLU_RS01405 0.54 -0.1
312,181 - PFLU_RS01405 0.54 +0.3
312,181 - PFLU_RS01405 0.54 +0.9
312,181 - PFLU_RS01405 0.54 +0.2
312,181 - PFLU_RS01405 0.54 +0.3
312,181 - PFLU_RS01405 0.54 +1.6
312,312 - PFLU_RS01405 0.61 +1.0
312,412 - PFLU_RS01405 0.66 -0.2
312,536 + PFLU_RS01405 0.73 +0.5
312,536 + PFLU_RS01405 0.73 +0.1
312,536 + PFLU_RS01405 0.73 -0.0
312,698 + PFLU_RS01405 0.82 +0.5
312,698 + PFLU_RS01405 0.82 -0.1
312,698 + PFLU_RS01405 0.82 -0.7
312,698 + PFLU_RS01405 0.82 -0.6
312,699 - PFLU_RS01405 0.82 +0.5
312,699 - PFLU_RS01405 0.82 +0.2
312,837 - PFLU_RS01405 0.90 +0.4
312,869 + +0.6
312,869 + -0.5
312,870 - +1.3
312,870 - +0.4
312,870 - +0.8
312,870 - +1.6
312,870 - +1.7
312,870 - +2.1
312,917 + -1.3
312,917 + +1.9
312,917 + +0.4
312,917 + -1.1
313,052 + -0.8
313,052 + -0.5
313,052 + -0.2
313,059 - -0.6

Or see this region's nucleotide sequence