Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01055 and PFLU_RS01060 are separated by 51 nucleotides PFLU_RS01060 and PFLU_RS01065 are separated by 1 nucleotides PFLU_RS01065 and PFLU_RS31370 are separated by 34 nucleotides PFLU_RS31370 and PFLU_RS01070 are separated by 76 nucleotides PFLU_RS01070 and PFLU_RS01075 are separated by 49 nucleotides
PFLU_RS01055: PFLU_RS01055 - energy transducer TonB, at 236,868 to 237,683
_RS01055
PFLU_RS01060: PFLU_RS01060 - MotA/TolQ/ExbB proton channel family protein, at 237,735 to 238,457
_RS01060
PFLU_RS01065: PFLU_RS01065 - biopolymer transporter ExbD, at 238,459 to 238,860
_RS01065
PFLU_RS31370: PFLU_RS31370 - hypothetical protein, at 238,895 to 239,113
_RS31370
PFLU_RS01070: PFLU_RS01070 - alpha/beta hydrolase, at 239,190 to 239,771
_RS01070
PFLU_RS01075: PFLU_RS01075 - sigma-54-dependent Fis family transcriptional regulator, at 239,821 to 240,741
_RS01075
Position (kb) 238
239 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.511 kb on + strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.512 kb on - strand, within PFLU_RS01055 at 237.681 kb on + strand at 237.681 kb on + strand at 237.681 kb on + strand at 237.681 kb on + strand at 237.682 kb on - strand at 237.682 kb on - strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.685 kb on + strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.686 kb on - strand at 237.718 kb on + strand at 237.718 kb on + strand at 237.719 kb on - strand at 237.719 kb on - strand at 237.719 kb on - strand at 237.719 kb on - strand at 237.719 kb on - strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.721 kb on + strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.722 kb on - strand at 237.745 kb on + strand at 237.746 kb on - strand at 237.746 kb on - strand at 237.746 kb on - strand at 237.746 kb on - strand at 238.293 kb on + strand, within PFLU_RS01060 at 238.293 kb on + strand, within PFLU_RS01060 at 238.293 kb on + strand, within PFLU_RS01060 at 238.294 kb on - strand, within PFLU_RS01060 at 238.294 kb on - strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.299 kb on + strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.300 kb on - strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.359 kb on + strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.360 kb on - strand, within PFLU_RS01060 at 238.535 kb on + strand, within PFLU_RS01065 at 238.535 kb on + strand, within PFLU_RS01065 at 238.536 kb on - strand, within PFLU_RS01065 at 238.536 kb on - strand, within PFLU_RS01065 at 238.551 kb on + strand, within PFLU_RS01065 at 238.551 kb on + strand, within PFLU_RS01065 at 238.783 kb on + strand, within PFLU_RS01065 at 238.783 kb on + strand, within PFLU_RS01065 at 238.812 kb on + strand, within PFLU_RS01065 at 238.831 kb on - strand at 238.858 kb on + strand at 238.858 kb on + strand at 238.858 kb on + strand at 238.858 kb on + strand at 238.858 kb on + strand at 238.858 kb on + strand at 238.858 kb on + strand at 238.858 kb on + strand at 238.859 kb on - strand at 238.859 kb on - strand at 238.859 kb on - strand at 238.859 kb on - strand at 238.859 kb on - strand at 238.859 kb on - strand at 238.859 kb on - strand at 238.859 kb on - strand at 238.859 kb on - strand at 238.879 kb on + strand at 238.880 kb on - strand at 238.880 kb on - strand at 238.941 kb on + strand, within PFLU_RS31370 at 238.941 kb on + strand, within PFLU_RS31370 at 238.942 kb on - strand, within PFLU_RS31370 at 238.942 kb on - strand, within PFLU_RS31370 at 238.962 kb on + strand, within PFLU_RS31370 at 238.962 kb on + strand, within PFLU_RS31370 at 238.962 kb on + strand, within PFLU_RS31370 at 238.962 kb on + strand, within PFLU_RS31370 at 238.962 kb on + strand, within PFLU_RS31370 at 238.962 kb on + strand, within PFLU_RS31370 at 238.963 kb on - strand, within PFLU_RS31370 at 238.963 kb on - strand, within PFLU_RS31370 at 238.963 kb on - strand, within PFLU_RS31370 at 239.011 kb on + strand, within PFLU_RS31370 at 239.011 kb on + strand, within PFLU_RS31370 at 239.012 kb on - strand, within PFLU_RS31370 at 239.012 kb on - strand, within PFLU_RS31370 at 239.012 kb on - strand, within PFLU_RS31370 at 239.012 kb on - strand, within PFLU_RS31370 at 239.027 kb on + strand, within PFLU_RS31370 at 239.027 kb on + strand, within PFLU_RS31370 at 239.028 kb on - strand, within PFLU_RS31370 at 239.028 kb on - strand, within PFLU_RS31370 at 239.135 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.148 kb on + strand at 239.149 kb on - strand at 239.149 kb on - strand at 239.149 kb on - strand at 239.149 kb on - strand at 239.149 kb on - strand at 239.149 kb on - strand at 239.149 kb on - strand at 239.149 kb on - strand at 239.149 kb on - strand at 239.149 kb on - strand at 239.150 kb on + strand at 239.150 kb on + strand at 239.150 kb on + strand at 239.150 kb on + strand at 239.150 kb on + strand at 239.150 kb on + strand at 239.151 kb on - strand at 239.151 kb on - strand at 239.151 kb on - strand at 239.151 kb on - strand at 239.151 kb on - strand at 239.151 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.396 kb on + strand, within PFLU_RS01070 at 239.396 kb on + strand, within PFLU_RS01070 at 239.396 kb on + strand, within PFLU_RS01070 at 239.397 kb on - strand, within PFLU_RS01070 at 239.397 kb on - strand, within PFLU_RS01070 at 239.631 kb on - strand, within PFLU_RS01070 at 239.631 kb on - strand, within PFLU_RS01070 at 239.774 kb on - strand at 239.774 kb on - strand at 239.840 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 237,511 + PFLU_RS01055 0.79 +0.9 237,511 + PFLU_RS01055 0.79 -0.0 237,511 + PFLU_RS01055 0.79 -1.7 237,511 + PFLU_RS01055 0.79 -0.5 237,511 + PFLU_RS01055 0.79 -0.6 237,511 + PFLU_RS01055 0.79 +1.0 237,511 + PFLU_RS01055 0.79 -0.0 237,511 + PFLU_RS01055 0.79 -0.8 237,511 + PFLU_RS01055 0.79 +0.2 237,511 + PFLU_RS01055 0.79 +0.6 237,511 + PFLU_RS01055 0.79 +0.7 237,511 + PFLU_RS01055 0.79 -0.3 237,511 + PFLU_RS01055 0.79 +0.7 237,511 + PFLU_RS01055 0.79 +0.1 237,512 - PFLU_RS01055 0.79 -0.1 237,512 - PFLU_RS01055 0.79 +0.2 237,512 - PFLU_RS01055 0.79 +0.7 237,512 - PFLU_RS01055 0.79 +0.6 237,512 - PFLU_RS01055 0.79 +1.2 237,512 - PFLU_RS01055 0.79 -1.8 237,512 - PFLU_RS01055 0.79 +0.7 237,512 - PFLU_RS01055 0.79 -0.5 237,512 - PFLU_RS01055 0.79 -0.5 237,512 - PFLU_RS01055 0.79 -0.5 237,681 + -1.2 237,681 + +0.5 237,681 + +1.5 237,681 + +0.4 237,682 - -0.4 237,682 - -0.1 237,685 + +0.0 237,685 + -0.8 237,685 + +0.2 237,685 + +0.0 237,685 + +1.0 237,685 + -3.1 237,685 + +0.9 237,685 + -0.5 237,685 + -1.3 237,685 + +0.2 237,685 + -2.0 237,685 + +1.6 237,685 + -2.4 237,685 + -0.1 237,685 + -1.6 237,685 + +0.8 237,685 + +0.6 237,686 - -0.4 237,686 - -0.5 237,686 - -0.5 237,686 - -0.9 237,686 - +0.3 237,686 - -1.1 237,686 - -1.9 237,686 - +0.7 237,686 - -1.6 237,686 - +0.3 237,686 - +0.9 237,686 - -0.2 237,686 - -0.9 237,686 - +1.2 237,718 + -0.4 237,718 + +0.5 237,719 - -1.0 237,719 - -0.5 237,719 - -0.0 237,719 - -1.1 237,719 - -0.6 237,721 + +0.5 237,721 + +0.4 237,721 + +0.5 237,721 + +0.6 237,721 + -0.4 237,721 + +0.6 237,721 + -0.3 237,721 + -0.1 237,721 + +1.6 237,721 + +0.1 237,721 + +0.3 237,722 - -0.7 237,722 - +0.7 237,722 - +0.1 237,722 - -0.9 237,722 - -0.6 237,722 - +0.3 237,745 + -1.2 237,746 - +0.5 237,746 - +1.6 237,746 - +0.7 237,746 - +0.5 238,293 + PFLU_RS01060 0.77 +0.6 238,293 + PFLU_RS01060 0.77 -0.3 238,293 + PFLU_RS01060 0.77 +1.2 238,294 - PFLU_RS01060 0.77 -0.8 238,294 - PFLU_RS01060 0.77 +0.3 238,299 + PFLU_RS01060 0.78 +0.8 238,299 + PFLU_RS01060 0.78 +0.6 238,299 + PFLU_RS01060 0.78 +1.1 238,299 + PFLU_RS01060 0.78 +0.5 238,299 + PFLU_RS01060 0.78 -0.6 238,299 + PFLU_RS01060 0.78 +1.1 238,299 + PFLU_RS01060 0.78 -0.2 238,299 + PFLU_RS01060 0.78 +0.9 238,299 + PFLU_RS01060 0.78 -2.3 238,299 + PFLU_RS01060 0.78 +0.8 238,299 + PFLU_RS01060 0.78 +0.1 238,300 - PFLU_RS01060 0.78 -0.1 238,300 - PFLU_RS01060 0.78 +1.0 238,300 - PFLU_RS01060 0.78 -0.1 238,300 - PFLU_RS01060 0.78 +0.3 238,300 - PFLU_RS01060 0.78 +0.7 238,300 - PFLU_RS01060 0.78 +2.1 238,359 + PFLU_RS01060 0.86 +0.2 238,359 + PFLU_RS01060 0.86 -1.4 238,359 + PFLU_RS01060 0.86 -0.4 238,359 + PFLU_RS01060 0.86 -0.5 238,359 + PFLU_RS01060 0.86 +0.7 238,359 + PFLU_RS01060 0.86 +0.4 238,360 - PFLU_RS01060 0.86 +1.0 238,360 - PFLU_RS01060 0.86 +1.9 238,360 - PFLU_RS01060 0.86 +0.4 238,360 - PFLU_RS01060 0.86 +0.3 238,360 - PFLU_RS01060 0.86 +0.7 238,360 - PFLU_RS01060 0.86 +0.2 238,535 + PFLU_RS01065 0.19 +0.5 238,535 + PFLU_RS01065 0.19 +2.1 238,536 - PFLU_RS01065 0.19 +1.1 238,536 - PFLU_RS01065 0.19 -1.5 238,551 + PFLU_RS01065 0.23 -0.2 238,551 + PFLU_RS01065 0.23 +0.9 238,783 + PFLU_RS01065 0.81 +0.4 238,783 + PFLU_RS01065 0.81 +0.3 238,812 + PFLU_RS01065 0.88 +1.3 238,831 - -1.1 238,858 + -0.3 238,858 + +0.8 238,858 + -0.7 238,858 + +0.9 238,858 + +0.5 238,858 + +1.8 238,858 + -0.1 238,858 + -0.6 238,859 - -0.3 238,859 - -2.0 238,859 - -0.6 238,859 - -3.9 238,859 - -0.8 238,859 - -0.2 238,859 - +0.1 238,859 - -0.8 238,859 - +0.1 238,879 + +0.6 238,880 - +0.1 238,880 - -0.0 238,941 + PFLU_RS31370 0.21 -1.2 238,941 + PFLU_RS31370 0.21 -0.1 238,942 - PFLU_RS31370 0.21 +0.6 238,942 - PFLU_RS31370 0.21 -0.4 238,962 + PFLU_RS31370 0.31 -0.6 238,962 + PFLU_RS31370 0.31 +0.1 238,962 + PFLU_RS31370 0.31 -1.1 238,962 + PFLU_RS31370 0.31 -1.3 238,962 + PFLU_RS31370 0.31 +0.8 238,962 + PFLU_RS31370 0.31 +1.1 238,963 - PFLU_RS31370 0.31 +1.3 238,963 - PFLU_RS31370 0.31 -0.2 238,963 - PFLU_RS31370 0.31 -0.3 239,011 + PFLU_RS31370 0.53 +0.4 239,011 + PFLU_RS31370 0.53 +0.7 239,012 - PFLU_RS31370 0.53 +1.0 239,012 - PFLU_RS31370 0.53 +0.7 239,012 - PFLU_RS31370 0.53 +0.6 239,012 - PFLU_RS31370 0.53 +0.1 239,027 + PFLU_RS31370 0.60 +1.1 239,027 + PFLU_RS31370 0.60 -1.2 239,028 - PFLU_RS31370 0.61 -1.5 239,028 - PFLU_RS31370 0.61 -0.5 239,135 + -0.4 239,148 + -0.2 239,148 + +0.4 239,148 + -0.3 239,148 + +1.0 239,148 + +0.6 239,148 + +0.5 239,148 + +0.2 239,148 + -1.8 239,148 + +0.0 239,148 + -0.3 239,148 + +0.6 239,149 - -1.2 239,149 - +0.3 239,149 - -0.2 239,149 - +0.9 239,149 - +0.4 239,149 - +1.2 239,149 - +0.6 239,149 - -0.7 239,149 - +0.6 239,149 - +0.3 239,150 + -0.2 239,150 + +1.5 239,150 + +0.2 239,150 + +0.2 239,150 + -0.9 239,150 + +0.1 239,151 - +0.2 239,151 - -1.6 239,151 - +0.4 239,151 - -0.1 239,151 - +0.4 239,151 - -1.0 239,167 - +1.1 239,167 - -0.6 239,396 + PFLU_RS01070 0.35 +0.2 239,396 + PFLU_RS01070 0.35 -0.1 239,396 + PFLU_RS01070 0.35 +0.6 239,397 - PFLU_RS01070 0.36 +1.2 239,397 - PFLU_RS01070 0.36 +0.4 239,631 - PFLU_RS01070 0.76 +1.3 239,631 - PFLU_RS01070 0.76 +0.3 239,774 - +1.1 239,774 - -1.0 239,840 - +0.1
Or see this region's nucleotide sequence