Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00645

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00640 and PFLU_RS00645 are separated by 1 nucleotidesPFLU_RS00645 and PFLU_RS00650 are separated by 11 nucleotidesPFLU_RS00650 and PFLU_RS00655 are separated by 99 nucleotides PFLU_RS00640: PFLU_RS00640 - ABC transporter substrate-binding protein, at 135,383 to 136,408 _RS00640 PFLU_RS00645: PFLU_RS00645 - ABC transporter ATP-binding protein, at 136,410 to 137,261 _RS00645 PFLU_RS00650: PFLU_RS00650 - ABC transporter permease, at 137,273 to 138,121 _RS00650 PFLU_RS00655: PFLU_RS00655 - TonB family protein, at 138,221 to 138,847 _RS00655 Position (kb) 136 137 138Strain fitness (log2 ratio) -2 -1 0 1 2at 135.434 kb on - strandat 135.521 kb on + strand, within PFLU_RS00640at 135.521 kb on + strand, within PFLU_RS00640at 135.521 kb on + strand, within PFLU_RS00640at 135.522 kb on - strand, within PFLU_RS00640at 135.522 kb on - strand, within PFLU_RS00640at 135.522 kb on - strand, within PFLU_RS00640at 135.528 kb on + strand, within PFLU_RS00640at 135.567 kb on - strand, within PFLU_RS00640at 135.758 kb on + strand, within PFLU_RS00640at 135.759 kb on - strand, within PFLU_RS00640at 135.759 kb on - strand, within PFLU_RS00640at 135.761 kb on + strand, within PFLU_RS00640at 135.761 kb on + strand, within PFLU_RS00640at 135.761 kb on + strand, within PFLU_RS00640at 135.761 kb on + strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.762 kb on - strand, within PFLU_RS00640at 135.870 kb on - strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.920 kb on + strand, within PFLU_RS00640at 135.921 kb on - strand, within PFLU_RS00640at 135.921 kb on - strand, within PFLU_RS00640at 135.921 kb on - strand, within PFLU_RS00640at 135.921 kb on - strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.058 kb on + strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.059 kb on - strand, within PFLU_RS00640at 136.133 kb on + strand, within PFLU_RS00640at 136.133 kb on + strand, within PFLU_RS00640at 136.133 kb on + strand, within PFLU_RS00640at 136.133 kb on + strand, within PFLU_RS00640at 136.134 kb on - strand, within PFLU_RS00640at 136.134 kb on - strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.208 kb on + strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.209 kb on - strand, within PFLU_RS00640at 136.304 kb on + strand, within PFLU_RS00640at 136.370 kb on + strandat 136.370 kb on + strandat 136.370 kb on + strandat 136.371 kb on - strandat 136.371 kb on - strandat 136.371 kb on - strandat 136.563 kb on + strand, within PFLU_RS00645at 136.563 kb on + strand, within PFLU_RS00645at 136.592 kb on + strand, within PFLU_RS00645at 136.592 kb on + strand, within PFLU_RS00645at 136.593 kb on - strand, within PFLU_RS00645at 136.593 kb on - strand, within PFLU_RS00645at 136.625 kb on + strand, within PFLU_RS00645at 136.626 kb on - strand, within PFLU_RS00645at 136.626 kb on - strand, within PFLU_RS00645at 136.816 kb on - strand, within PFLU_RS00645at 136.878 kb on - strand, within PFLU_RS00645at 137.133 kb on + strand, within PFLU_RS00645at 137.133 kb on + strand, within PFLU_RS00645at 137.134 kb on - strand, within PFLU_RS00645at 137.134 kb on - strand, within PFLU_RS00645at 137.134 kb on - strand, within PFLU_RS00645at 137.286 kb on - strandat 137.480 kb on + strand, within PFLU_RS00650at 137.481 kb on - strand, within PFLU_RS00650at 137.481 kb on - strand, within PFLU_RS00650at 137.481 kb on - strand, within PFLU_RS00650at 137.762 kb on + strand, within PFLU_RS00650at 137.763 kb on - strand, within PFLU_RS00650at 137.763 kb on - strand, within PFLU_RS00650at 137.813 kb on + strand, within PFLU_RS00650at 137.813 kb on + strand, within PFLU_RS00650at 137.813 kb on + strand, within PFLU_RS00650at 137.813 kb on + strand, within PFLU_RS00650at 137.814 kb on - strand, within PFLU_RS00650at 137.814 kb on - strand, within PFLU_RS00650at 137.938 kb on - strand, within PFLU_RS00650at 137.975 kb on + strand, within PFLU_RS00650at 137.975 kb on + strand, within PFLU_RS00650at 137.975 kb on + strand, within PFLU_RS00650at 137.975 kb on + strand, within PFLU_RS00650at 137.975 kb on + strand, within PFLU_RS00650at 137.975 kb on + strand, within PFLU_RS00650at 137.975 kb on + strand, within PFLU_RS00650at 137.975 kb on + strand, within PFLU_RS00650at 137.975 kb on + strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 137.976 kb on - strand, within PFLU_RS00650at 138.002 kb on + strand, within PFLU_RS00650at 138.002 kb on + strand, within PFLU_RS00650at 138.002 kb on + strand, within PFLU_RS00650at 138.002 kb on + strand, within PFLU_RS00650at 138.002 kb on + strand, within PFLU_RS00650at 138.003 kb on - strand, within PFLU_RS00650at 138.003 kb on - strand, within PFLU_RS00650at 138.003 kb on - strand, within PFLU_RS00650at 138.003 kb on - strand, within PFLU_RS00650at 138.005 kb on - strand, within PFLU_RS00650at 138.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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135,434 - +1.0
135,521 + PFLU_RS00640 0.13 +1.7
135,521 + PFLU_RS00640 0.13 +0.3
135,521 + PFLU_RS00640 0.13 +0.3
135,522 - PFLU_RS00640 0.14 +0.4
135,522 - PFLU_RS00640 0.14 +1.5
135,522 - PFLU_RS00640 0.14 +0.6
135,528 + PFLU_RS00640 0.14 +0.9
135,567 - PFLU_RS00640 0.18 -1.4
135,758 + PFLU_RS00640 0.37 -0.2
135,759 - PFLU_RS00640 0.37 -1.7
135,759 - PFLU_RS00640 0.37 +0.6
135,761 + PFLU_RS00640 0.37 +0.3
135,761 + PFLU_RS00640 0.37 +2.1
135,761 + PFLU_RS00640 0.37 +0.6
135,761 + PFLU_RS00640 0.37 +0.8
135,762 - PFLU_RS00640 0.37 -1.0
135,762 - PFLU_RS00640 0.37 -0.4
135,762 - PFLU_RS00640 0.37 -1.0
135,762 - PFLU_RS00640 0.37 -0.4
135,762 - PFLU_RS00640 0.37 +0.2
135,762 - PFLU_RS00640 0.37 -0.4
135,870 - PFLU_RS00640 0.47 +0.4
135,920 + PFLU_RS00640 0.52 +0.1
135,920 + PFLU_RS00640 0.52 +0.0
135,920 + PFLU_RS00640 0.52 -1.1
135,920 + PFLU_RS00640 0.52 -1.0
135,920 + PFLU_RS00640 0.52 +0.8
135,920 + PFLU_RS00640 0.52 +0.7
135,921 - PFLU_RS00640 0.52 -0.2
135,921 - PFLU_RS00640 0.52 -0.1
135,921 - PFLU_RS00640 0.52 +1.5
135,921 - PFLU_RS00640 0.52 -0.4
136,058 + PFLU_RS00640 0.66 +0.6
136,058 + PFLU_RS00640 0.66 +0.6
136,058 + PFLU_RS00640 0.66 -0.3
136,058 + PFLU_RS00640 0.66 -0.2
136,058 + PFLU_RS00640 0.66 +0.1
136,058 + PFLU_RS00640 0.66 -0.2
136,059 - PFLU_RS00640 0.66 -0.6
136,059 - PFLU_RS00640 0.66 +0.7
136,059 - PFLU_RS00640 0.66 -0.1
136,059 - PFLU_RS00640 0.66 +0.0
136,059 - PFLU_RS00640 0.66 +0.2
136,133 + PFLU_RS00640 0.73 +1.5
136,133 + PFLU_RS00640 0.73 +0.8
136,133 + PFLU_RS00640 0.73 -0.1
136,133 + PFLU_RS00640 0.73 -0.2
136,134 - PFLU_RS00640 0.73 +0.6
136,134 - PFLU_RS00640 0.73 -0.2
136,208 + PFLU_RS00640 0.80 +0.7
136,208 + PFLU_RS00640 0.80 +2.4
136,208 + PFLU_RS00640 0.80 -0.9
136,208 + PFLU_RS00640 0.80 +0.1
136,208 + PFLU_RS00640 0.80 -0.5
136,208 + PFLU_RS00640 0.80 +0.2
136,208 + PFLU_RS00640 0.80 +0.8
136,208 + PFLU_RS00640 0.80 +0.2
136,208 + PFLU_RS00640 0.80 +0.1
136,208 + PFLU_RS00640 0.80 -0.2
136,208 + PFLU_RS00640 0.80 -0.2
136,208 + PFLU_RS00640 0.80 +0.6
136,208 + PFLU_RS00640 0.80 -0.5
136,208 + PFLU_RS00640 0.80 -0.6
136,209 - PFLU_RS00640 0.81 +1.2
136,209 - PFLU_RS00640 0.81 -0.6
136,209 - PFLU_RS00640 0.81 -1.1
136,209 - PFLU_RS00640 0.81 +0.8
136,209 - PFLU_RS00640 0.81 -1.6
136,209 - PFLU_RS00640 0.81 +0.3
136,209 - PFLU_RS00640 0.81 -0.2
136,209 - PFLU_RS00640 0.81 +0.8
136,209 - PFLU_RS00640 0.81 -0.1
136,209 - PFLU_RS00640 0.81 -0.1
136,209 - PFLU_RS00640 0.81 +1.4
136,209 - PFLU_RS00640 0.81 +0.4
136,209 - PFLU_RS00640 0.81 +1.2
136,209 - PFLU_RS00640 0.81 -0.1
136,209 - PFLU_RS00640 0.81 +0.6
136,209 - PFLU_RS00640 0.81 -0.9
136,209 - PFLU_RS00640 0.81 -1.8
136,304 + PFLU_RS00640 0.90 -0.9
136,370 + +0.1
136,370 + +1.4
136,370 + +0.2
136,371 - +1.3
136,371 - -1.2
136,371 - +1.1
136,563 + PFLU_RS00645 0.18 +0.8
136,563 + PFLU_RS00645 0.18 -0.4
136,592 + PFLU_RS00645 0.21 -0.1
136,592 + PFLU_RS00645 0.21 +0.7
136,593 - PFLU_RS00645 0.21 -0.4
136,593 - PFLU_RS00645 0.21 -0.3
136,625 + PFLU_RS00645 0.25 +0.1
136,626 - PFLU_RS00645 0.25 -0.6
136,626 - PFLU_RS00645 0.25 +0.3
136,816 - PFLU_RS00645 0.48 -0.7
136,878 - PFLU_RS00645 0.55 +0.9
137,133 + PFLU_RS00645 0.85 +1.0
137,133 + PFLU_RS00645 0.85 -0.4
137,134 - PFLU_RS00645 0.85 +1.5
137,134 - PFLU_RS00645 0.85 -0.0
137,134 - PFLU_RS00645 0.85 +1.1
137,286 - +0.6
137,480 + PFLU_RS00650 0.24 +0.3
137,481 - PFLU_RS00650 0.24 -0.5
137,481 - PFLU_RS00650 0.24 +0.7
137,481 - PFLU_RS00650 0.24 -0.7
137,762 + PFLU_RS00650 0.58 +0.7
137,763 - PFLU_RS00650 0.58 -0.2
137,763 - PFLU_RS00650 0.58 +1.7
137,813 + PFLU_RS00650 0.64 -1.3
137,813 + PFLU_RS00650 0.64 -0.8
137,813 + PFLU_RS00650 0.64 -1.1
137,813 + PFLU_RS00650 0.64 -0.6
137,814 - PFLU_RS00650 0.64 -0.5
137,814 - PFLU_RS00650 0.64 +0.5
137,938 - PFLU_RS00650 0.78 +0.3
137,975 + PFLU_RS00650 0.83 -0.4
137,975 + PFLU_RS00650 0.83 +0.1
137,975 + PFLU_RS00650 0.83 +0.4
137,975 + PFLU_RS00650 0.83 -0.3
137,975 + PFLU_RS00650 0.83 -0.1
137,975 + PFLU_RS00650 0.83 -0.0
137,975 + PFLU_RS00650 0.83 -0.9
137,975 + PFLU_RS00650 0.83 +0.5
137,975 + PFLU_RS00650 0.83 -0.9
137,976 - PFLU_RS00650 0.83 -0.9
137,976 - PFLU_RS00650 0.83 -0.4
137,976 - PFLU_RS00650 0.83 -0.3
137,976 - PFLU_RS00650 0.83 +2.5
137,976 - PFLU_RS00650 0.83 +0.1
137,976 - PFLU_RS00650 0.83 +1.0
137,976 - PFLU_RS00650 0.83 +0.5
137,976 - PFLU_RS00650 0.83 +0.8
137,976 - PFLU_RS00650 0.83 -0.6
137,976 - PFLU_RS00650 0.83 -0.6
137,976 - PFLU_RS00650 0.83 -0.2
137,976 - PFLU_RS00650 0.83 -1.5
137,976 - PFLU_RS00650 0.83 +1.4
138,002 + PFLU_RS00650 0.86 -0.6
138,002 + PFLU_RS00650 0.86 +0.1
138,002 + PFLU_RS00650 0.86 -1.6
138,002 + PFLU_RS00650 0.86 -1.5
138,002 + PFLU_RS00650 0.86 +1.0
138,003 - PFLU_RS00650 0.86 -1.1
138,003 - PFLU_RS00650 0.86 -0.1
138,003 - PFLU_RS00650 0.86 +0.9
138,003 - PFLU_RS00650 0.86 +0.0
138,005 - PFLU_RS00650 0.86 +1.6
138,120 - -0.8

Or see this region's nucleotide sequence