Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00355 and PFLU_RS00360 are separated by 65 nucleotides PFLU_RS00360 and PFLU_RS00365 are separated by 37 nucleotides PFLU_RS00365 and PFLU_RS00370 overlap by 8 nucleotides
PFLU_RS00355: PFLU_RS00355 - catalase HPII, at 70,664 to 72,805
_RS00355
PFLU_RS00360: PFLU_RS00360 - hypothetical protein, at 72,871 to 73,590
_RS00360
PFLU_RS00365: PFLU_RS00365 - zinc ABC transporter permease subunit ZnuB, at 73,628 to 74,416
_RS00365
PFLU_RS00370: PFLU_RS00370 - zinc ABC transporter ATP-binding protein ZnuC, at 74,409 to 75,194
_RS00370
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.879 kb on - strand, within PFLU_RS00355 at 71.934 kb on - strand, within PFLU_RS00355 at 71.934 kb on - strand, within PFLU_RS00355 at 71.934 kb on - strand, within PFLU_RS00355 at 72.020 kb on - strand, within PFLU_RS00355 at 72.134 kb on + strand, within PFLU_RS00355 at 72.134 kb on + strand, within PFLU_RS00355 at 72.134 kb on + strand, within PFLU_RS00355 at 72.134 kb on + strand, within PFLU_RS00355 at 72.134 kb on + strand, within PFLU_RS00355 at 72.134 kb on + strand, within PFLU_RS00355 at 72.134 kb on + strand, within PFLU_RS00355 at 72.135 kb on - strand, within PFLU_RS00355 at 72.135 kb on - strand, within PFLU_RS00355 at 72.136 kb on + strand, within PFLU_RS00355 at 72.136 kb on + strand, within PFLU_RS00355 at 72.136 kb on + strand, within PFLU_RS00355 at 72.136 kb on + strand, within PFLU_RS00355 at 72.136 kb on + strand, within PFLU_RS00355 at 72.136 kb on + strand, within PFLU_RS00355 at 72.136 kb on + strand, within PFLU_RS00355 at 72.136 kb on + strand, within PFLU_RS00355 at 72.137 kb on - strand, within PFLU_RS00355 at 72.137 kb on - strand, within PFLU_RS00355 at 72.137 kb on - strand, within PFLU_RS00355 at 72.137 kb on - strand, within PFLU_RS00355 at 72.137 kb on - strand, within PFLU_RS00355 at 72.137 kb on - strand, within PFLU_RS00355 at 72.137 kb on - strand, within PFLU_RS00355 at 72.206 kb on - strand, within PFLU_RS00355 at 72.273 kb on + strand, within PFLU_RS00355 at 72.273 kb on + strand, within PFLU_RS00355 at 72.620 kb on + strand at 72.620 kb on + strand at 72.620 kb on + strand at 72.620 kb on + strand at 72.620 kb on + strand at 72.621 kb on - strand at 72.621 kb on - strand at 72.621 kb on - strand at 72.782 kb on - strand at 72.803 kb on + strand at 72.803 kb on + strand at 72.803 kb on + strand at 72.804 kb on - strand at 72.822 kb on + strand at 72.822 kb on + strand at 72.822 kb on + strand at 72.822 kb on + strand at 72.822 kb on + strand at 72.823 kb on - strand at 72.823 kb on - strand at 72.823 kb on - strand at 72.823 kb on - strand at 72.823 kb on - strand at 72.872 kb on + strand at 72.872 kb on + strand at 72.872 kb on + strand at 72.872 kb on + strand at 72.872 kb on + strand at 72.873 kb on - strand at 72.873 kb on - strand at 72.912 kb on + strand at 72.913 kb on - strand at 73.043 kb on + strand, within PFLU_RS00360 at 73.043 kb on + strand, within PFLU_RS00360 at 73.044 kb on - strand, within PFLU_RS00360 at 73.044 kb on - strand, within PFLU_RS00360 at 73.044 kb on - strand, within PFLU_RS00360 at 73.235 kb on - strand, within PFLU_RS00360 at 73.306 kb on + strand, within PFLU_RS00360 at 73.306 kb on + strand, within PFLU_RS00360 at 73.306 kb on + strand, within PFLU_RS00360 at 73.306 kb on + strand, within PFLU_RS00360 at 73.307 kb on - strand, within PFLU_RS00360 at 73.307 kb on - strand, within PFLU_RS00360 at 73.346 kb on + strand, within PFLU_RS00360 at 73.347 kb on - strand, within PFLU_RS00360 at 73.347 kb on - strand, within PFLU_RS00360 at 73.347 kb on - strand, within PFLU_RS00360 at 73.347 kb on - strand, within PFLU_RS00360 at 73.370 kb on + strand, within PFLU_RS00360 at 73.371 kb on - strand, within PFLU_RS00360 at 73.409 kb on - strand, within PFLU_RS00360 at 73.417 kb on + strand, within PFLU_RS00360 at 73.417 kb on + strand, within PFLU_RS00360 at 73.418 kb on - strand, within PFLU_RS00360 at 73.604 kb on + strand at 73.604 kb on + strand at 73.604 kb on + strand at 73.604 kb on + strand at 73.604 kb on + strand at 73.605 kb on - strand at 73.605 kb on - strand at 73.629 kb on + strand at 73.630 kb on - strand at 73.630 kb on - strand at 73.630 kb on - strand at 73.630 kb on - strand at 73.708 kb on + strand, within PFLU_RS00365 at 73.709 kb on - strand, within PFLU_RS00365 at 73.850 kb on + strand, within PFLU_RS00365 at 73.850 kb on + strand, within PFLU_RS00365 at 73.851 kb on - strand, within PFLU_RS00365 at 73.851 kb on - strand, within PFLU_RS00365 at 73.851 kb on - strand, within PFLU_RS00365 at 73.859 kb on + strand, within PFLU_RS00365 at 73.859 kb on + strand, within PFLU_RS00365 at 73.859 kb on + strand, within PFLU_RS00365 at 73.859 kb on + strand, within PFLU_RS00365 at 73.860 kb on - strand, within PFLU_RS00365 at 73.860 kb on - strand, within PFLU_RS00365 at 74.000 kb on + strand, within PFLU_RS00365 at 74.000 kb on + strand, within PFLU_RS00365 at 74.076 kb on + strand, within PFLU_RS00365 at 74.076 kb on + strand, within PFLU_RS00365 at 74.077 kb on - strand, within PFLU_RS00365 at 74.319 kb on + strand, within PFLU_RS00365 at 74.319 kb on + strand, within PFLU_RS00365 at 74.319 kb on + strand, within PFLU_RS00365 at 74.319 kb on + strand, within PFLU_RS00365 at 74.320 kb on - strand, within PFLU_RS00365 at 74.320 kb on - strand, within PFLU_RS00365 at 74.320 kb on - strand, within PFLU_RS00365 at 74.320 kb on - strand, within PFLU_RS00365 at 74.320 kb on - strand, within PFLU_RS00365 at 74.320 kb on - strand, within PFLU_RS00365 at 74.320 kb on - strand, within PFLU_RS00365 at 74.320 kb on - strand, within PFLU_RS00365 at 74.397 kb on + strand at 74.397 kb on + strand at 74.397 kb on + strand at 74.398 kb on - strand at 74.398 kb on - strand at 74.398 kb on - strand at 74.398 kb on - strand at 74.426 kb on + strand at 74.426 kb on + strand at 74.426 kb on + strand at 74.426 kb on + strand at 74.426 kb on + strand at 74.426 kb on + strand at 74.426 kb on + strand at 74.426 kb on + strand at 74.426 kb on + strand at 74.427 kb on - strand at 74.427 kb on - strand at 74.427 kb on - strand at 74.427 kb on - strand at 74.427 kb on - strand at 74.427 kb on - strand at 74.427 kb on - strand at 74.427 kb on - strand at 74.427 kb on - strand at 74.512 kb on + strand, within PFLU_RS00370 at 74.512 kb on + strand, within PFLU_RS00370 at 74.512 kb on + strand, within PFLU_RS00370 at 74.512 kb on + strand, within PFLU_RS00370 at 74.512 kb on + strand, within PFLU_RS00370 at 74.512 kb on + strand, within PFLU_RS00370 at 74.513 kb on - strand, within PFLU_RS00370 at 74.513 kb on - strand, within PFLU_RS00370 at 74.513 kb on - strand, within PFLU_RS00370 at 74.513 kb on - strand, within PFLU_RS00370 at 74.513 kb on - strand, within PFLU_RS00370 at 74.513 kb on - strand, within PFLU_RS00370 at 74.513 kb on - strand, within PFLU_RS00370
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 71,879 - PFLU_RS00355 0.57 +1.7 71,934 - PFLU_RS00355 0.59 -0.0 71,934 - PFLU_RS00355 0.59 +1.0 71,934 - PFLU_RS00355 0.59 -0.1 72,020 - PFLU_RS00355 0.63 +0.0 72,134 + PFLU_RS00355 0.69 +0.4 72,134 + PFLU_RS00355 0.69 -1.0 72,134 + PFLU_RS00355 0.69 -1.1 72,134 + PFLU_RS00355 0.69 +0.6 72,134 + PFLU_RS00355 0.69 +0.8 72,134 + PFLU_RS00355 0.69 +0.9 72,134 + PFLU_RS00355 0.69 +0.7 72,135 - PFLU_RS00355 0.69 +0.7 72,135 - PFLU_RS00355 0.69 +1.4 72,136 + PFLU_RS00355 0.69 -0.7 72,136 + PFLU_RS00355 0.69 +0.3 72,136 + PFLU_RS00355 0.69 -1.5 72,136 + PFLU_RS00355 0.69 -0.6 72,136 + PFLU_RS00355 0.69 +0.6 72,136 + PFLU_RS00355 0.69 -0.6 72,136 + PFLU_RS00355 0.69 +0.3 72,136 + PFLU_RS00355 0.69 -1.6 72,137 - PFLU_RS00355 0.69 -0.8 72,137 - PFLU_RS00355 0.69 +0.5 72,137 - PFLU_RS00355 0.69 +1.8 72,137 - PFLU_RS00355 0.69 -0.1 72,137 - PFLU_RS00355 0.69 -2.3 72,137 - PFLU_RS00355 0.69 -1.0 72,137 - PFLU_RS00355 0.69 +0.0 72,206 - PFLU_RS00355 0.72 +1.1 72,273 + PFLU_RS00355 0.75 +1.0 72,273 + PFLU_RS00355 0.75 -0.8 72,620 + +0.7 72,620 + -0.9 72,620 + +0.7 72,620 + +0.2 72,620 + -0.4 72,621 - -0.4 72,621 - -0.7 72,621 - -1.6 72,782 - -0.2 72,803 + -1.1 72,803 + +1.8 72,803 + +0.4 72,804 - -0.1 72,822 + -0.1 72,822 + +0.3 72,822 + -0.1 72,822 + +0.4 72,822 + -0.8 72,823 - -0.6 72,823 - -1.1 72,823 - -1.0 72,823 - +0.5 72,823 - +0.7 72,872 + +0.4 72,872 + +0.5 72,872 + +0.9 72,872 + +0.1 72,872 + +1.1 72,873 - -2.1 72,873 - +0.1 72,912 + +0.1 72,913 - -0.9 73,043 + PFLU_RS00360 0.24 +1.0 73,043 + PFLU_RS00360 0.24 -0.3 73,044 - PFLU_RS00360 0.24 +0.2 73,044 - PFLU_RS00360 0.24 -1.0 73,044 - PFLU_RS00360 0.24 +1.1 73,235 - PFLU_RS00360 0.51 -0.6 73,306 + PFLU_RS00360 0.60 +1.0 73,306 + PFLU_RS00360 0.60 +1.8 73,306 + PFLU_RS00360 0.60 +0.7 73,306 + PFLU_RS00360 0.60 +1.9 73,307 - PFLU_RS00360 0.61 +0.7 73,307 - PFLU_RS00360 0.61 -0.2 73,346 + PFLU_RS00360 0.66 +0.5 73,347 - PFLU_RS00360 0.66 +0.2 73,347 - PFLU_RS00360 0.66 +1.4 73,347 - PFLU_RS00360 0.66 -0.3 73,347 - PFLU_RS00360 0.66 +2.1 73,370 + PFLU_RS00360 0.69 +0.3 73,371 - PFLU_RS00360 0.69 +0.6 73,409 - PFLU_RS00360 0.75 +1.1 73,417 + PFLU_RS00360 0.76 +0.1 73,417 + PFLU_RS00360 0.76 +1.2 73,418 - PFLU_RS00360 0.76 +0.8 73,604 + +0.0 73,604 + +1.5 73,604 + +0.3 73,604 + +0.4 73,604 + -0.4 73,605 - -0.2 73,605 - +0.2 73,629 + +1.1 73,630 - -0.2 73,630 - +1.2 73,630 - +0.7 73,630 - -1.2 73,708 + PFLU_RS00365 0.10 -1.2 73,709 - PFLU_RS00365 0.10 +0.4 73,850 + PFLU_RS00365 0.28 +1.4 73,850 + PFLU_RS00365 0.28 -0.9 73,851 - PFLU_RS00365 0.28 +0.0 73,851 - PFLU_RS00365 0.28 +0.8 73,851 - PFLU_RS00365 0.28 -0.9 73,859 + PFLU_RS00365 0.29 -1.1 73,859 + PFLU_RS00365 0.29 +0.6 73,859 + PFLU_RS00365 0.29 +1.1 73,859 + PFLU_RS00365 0.29 -1.6 73,860 - PFLU_RS00365 0.29 +0.2 73,860 - PFLU_RS00365 0.29 -0.3 74,000 + PFLU_RS00365 0.47 +2.1 74,000 + PFLU_RS00365 0.47 +0.4 74,076 + PFLU_RS00365 0.57 -0.3 74,076 + PFLU_RS00365 0.57 +0.5 74,077 - PFLU_RS00365 0.57 +0.8 74,319 + PFLU_RS00365 0.88 -0.3 74,319 + PFLU_RS00365 0.88 +0.6 74,319 + PFLU_RS00365 0.88 -1.0 74,319 + PFLU_RS00365 0.88 -0.8 74,320 - PFLU_RS00365 0.88 +0.7 74,320 - PFLU_RS00365 0.88 +0.9 74,320 - PFLU_RS00365 0.88 -0.2 74,320 - PFLU_RS00365 0.88 -0.2 74,320 - PFLU_RS00365 0.88 -0.1 74,320 - PFLU_RS00365 0.88 +0.1 74,320 - PFLU_RS00365 0.88 +0.7 74,320 - PFLU_RS00365 0.88 +0.1 74,397 + -0.7 74,397 + +0.9 74,397 + -1.7 74,398 - -1.7 74,398 - +1.0 74,398 - +0.1 74,398 - +0.1 74,426 + +0.4 74,426 + -0.3 74,426 + +0.6 74,426 + -0.5 74,426 + +0.4 74,426 + -2.3 74,426 + +0.2 74,426 + +0.6 74,426 + +0.2 74,427 - +0.2 74,427 - +0.2 74,427 - +0.4 74,427 - -0.5 74,427 - -2.6 74,427 - +0.7 74,427 - -0.5 74,427 - -1.6 74,427 - -0.4 74,512 + PFLU_RS00370 0.13 -1.1 74,512 + PFLU_RS00370 0.13 -0.3 74,512 + PFLU_RS00370 0.13 -0.5 74,512 + PFLU_RS00370 0.13 -0.3 74,512 + PFLU_RS00370 0.13 +0.4 74,512 + PFLU_RS00370 0.13 +0.1 74,513 - PFLU_RS00370 0.13 +0.6 74,513 - PFLU_RS00370 0.13 +0.2 74,513 - PFLU_RS00370 0.13 +0.3 74,513 - PFLU_RS00370 0.13 +0.6 74,513 - PFLU_RS00370 0.13 +1.2 74,513 - PFLU_RS00370 0.13 +1.7 74,513 - PFLU_RS00370 0.13 -0.4
Or see this region's nucleotide sequence