Strain Fitness in Pseudomonas sp. S08-1 around OH686_19755

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_19750 and OH686_19755 are separated by 173 nucleotidesOH686_19755 and OH686_19760 are separated by 58 nucleotidesOH686_19760 and OH686_19765 are separated by 56 nucleotides OH686_19750: OH686_19750 - Transcriptional regulator, GntR family, at 4,045,854 to 4,046,570 _19750 OH686_19755: OH686_19755 - Aspartyl aminopeptidase , at 4,046,744 to 4,048,033 _19755 OH686_19760: OH686_19760 - LSU rRNA pseudouridine(746) synthase or tRNA pseudouridine(32) synthase , at 4,048,092 to 4,048,727 _19760 OH686_19765: OH686_19765 - cell division topological specificity factor MinE, at 4,048,784 to 4,049,038 _19765 Position (kb) 4046 4047 4048 4049Strain fitness (log2 ratio) -2 -1 0 1 2at 4045.786 kb on + strandat 4045.786 kb on + strandat 4045.787 kb on - strandat 4045.787 kb on - strandat 4045.787 kb on - strandat 4045.795 kb on + strandat 4045.796 kb on - strandat 4045.796 kb on - strandat 4045.832 kb on + strandat 4045.832 kb on + strandat 4046.017 kb on + strand, within OH686_19750at 4046.017 kb on + strand, within OH686_19750at 4046.017 kb on + strand, within OH686_19750at 4046.018 kb on - strand, within OH686_19750at 4046.037 kb on + strand, within OH686_19750at 4046.038 kb on - strand, within OH686_19750at 4046.038 kb on - strand, within OH686_19750at 4046.085 kb on + strand, within OH686_19750at 4046.085 kb on + strand, within OH686_19750at 4046.085 kb on + strand, within OH686_19750at 4046.085 kb on + strand, within OH686_19750at 4046.086 kb on - strand, within OH686_19750at 4046.086 kb on - strand, within OH686_19750at 4046.086 kb on - strand, within OH686_19750at 4046.086 kb on - strand, within OH686_19750at 4046.086 kb on - strand, within OH686_19750at 4046.086 kb on - strand, within OH686_19750at 4046.086 kb on - strand, within OH686_19750at 4046.155 kb on + strand, within OH686_19750at 4046.156 kb on - strand, within OH686_19750at 4046.156 kb on - strand, within OH686_19750at 4046.156 kb on - strand, within OH686_19750at 4046.190 kb on - strand, within OH686_19750at 4046.274 kb on + strand, within OH686_19750at 4046.274 kb on + strand, within OH686_19750at 4046.274 kb on + strand, within OH686_19750at 4046.274 kb on + strand, within OH686_19750at 4046.275 kb on - strand, within OH686_19750at 4046.275 kb on - strand, within OH686_19750at 4046.275 kb on - strand, within OH686_19750at 4046.275 kb on - strand, within OH686_19750at 4046.275 kb on - strand, within OH686_19750at 4046.275 kb on - strand, within OH686_19750at 4046.275 kb on - strand, within OH686_19750at 4046.286 kb on + strand, within OH686_19750at 4046.286 kb on + strand, within OH686_19750at 4046.286 kb on + strand, within OH686_19750at 4046.287 kb on - strand, within OH686_19750at 4046.287 kb on - strand, within OH686_19750at 4046.301 kb on + strand, within OH686_19750at 4046.301 kb on + strand, within OH686_19750at 4046.301 kb on + strand, within OH686_19750at 4046.301 kb on + strand, within OH686_19750at 4046.302 kb on - strand, within OH686_19750at 4046.302 kb on - strand, within OH686_19750at 4046.302 kb on - strand, within OH686_19750at 4046.352 kb on + strand, within OH686_19750at 4046.352 kb on + strand, within OH686_19750at 4046.352 kb on + strand, within OH686_19750at 4046.352 kb on + strand, within OH686_19750at 4046.353 kb on - strand, within OH686_19750at 4046.353 kb on - strand, within OH686_19750at 4046.365 kb on - strand, within OH686_19750at 4046.377 kb on - strand, within OH686_19750at 4046.402 kb on - strand, within OH686_19750at 4046.523 kb on + strandat 4046.524 kb on - strandat 4046.524 kb on - strandat 4046.524 kb on - strandat 4046.524 kb on - strandat 4046.524 kb on - strandat 4046.662 kb on + strandat 4046.662 kb on + strandat 4046.662 kb on + strandat 4046.662 kb on + strandat 4046.663 kb on - strandat 4046.663 kb on - strandat 4046.663 kb on - strandat 4046.736 kb on + strandat 4046.736 kb on + strandat 4046.737 kb on - strandat 4046.737 kb on - strandat 4046.766 kb on + strandat 4046.767 kb on - strandat 4046.767 kb on - strandat 4046.767 kb on - strandat 4046.767 kb on - strandat 4046.870 kb on + strandat 4046.870 kb on + strandat 4046.871 kb on - strandat 4047.087 kb on + strand, within OH686_19755at 4047.087 kb on + strand, within OH686_19755at 4047.087 kb on + strand, within OH686_19755at 4047.088 kb on - strand, within OH686_19755at 4047.088 kb on - strand, within OH686_19755at 4047.088 kb on - strand, within OH686_19755at 4047.088 kb on - strand, within OH686_19755at 4047.088 kb on - strand, within OH686_19755at 4047.088 kb on - strand, within OH686_19755at 4047.088 kb on - strand, within OH686_19755at 4047.310 kb on - strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.880 kb on - strand, within OH686_19755at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.211 kb on - strand, within OH686_19760at 4048.211 kb on - strand, within OH686_19760at 4048.211 kb on - strand, within OH686_19760at 4048.211 kb on - strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.399 kb on + strand, within OH686_19760at 4048.462 kb on + strand, within OH686_19760at 4048.463 kb on - strand, within OH686_19760at 4048.463 kb on - strand, within OH686_19760at 4048.463 kb on - strand, within OH686_19760at 4048.878 kb on + strand, within OH686_19765at 4048.878 kb on + strand, within OH686_19765at 4048.878 kb on + strand, within OH686_19765at 4048.879 kb on - strand, within OH686_19765at 4048.879 kb on - strand, within OH686_19765at 4048.879 kb on - strand, within OH686_19765

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,045,786 + -0.0
4,045,786 + +0.4
4,045,787 - +0.4
4,045,787 - -0.4
4,045,787 - -0.2
4,045,795 + -0.5
4,045,796 - -0.1
4,045,796 - +1.1
4,045,832 + -1.3
4,045,832 + +0.3
4,046,017 + OH686_19750 0.23 +0.6
4,046,017 + OH686_19750 0.23 +0.1
4,046,017 + OH686_19750 0.23 +0.3
4,046,018 - OH686_19750 0.23 +0.6
4,046,037 + OH686_19750 0.26 -0.1
4,046,038 - OH686_19750 0.26 +0.2
4,046,038 - OH686_19750 0.26 +0.3
4,046,085 + OH686_19750 0.32 +1.2
4,046,085 + OH686_19750 0.32 -0.0
4,046,085 + OH686_19750 0.32 -1.3
4,046,085 + OH686_19750 0.32 -0.2
4,046,086 - OH686_19750 0.32 -0.8
4,046,086 - OH686_19750 0.32 +0.3
4,046,086 - OH686_19750 0.32 -0.5
4,046,086 - OH686_19750 0.32 -0.5
4,046,086 - OH686_19750 0.32 +0.0
4,046,086 - OH686_19750 0.32 -0.2
4,046,086 - OH686_19750 0.32 -0.1
4,046,155 + OH686_19750 0.42 -0.8
4,046,156 - OH686_19750 0.42 +0.6
4,046,156 - OH686_19750 0.42 +1.6
4,046,156 - OH686_19750 0.42 +0.4
4,046,190 - OH686_19750 0.47 +0.9
4,046,274 + OH686_19750 0.59 +0.5
4,046,274 + OH686_19750 0.59 +0.8
4,046,274 + OH686_19750 0.59 -0.3
4,046,274 + OH686_19750 0.59 +0.5
4,046,275 - OH686_19750 0.59 -0.8
4,046,275 - OH686_19750 0.59 +0.8
4,046,275 - OH686_19750 0.59 +0.7
4,046,275 - OH686_19750 0.59 -0.6
4,046,275 - OH686_19750 0.59 +0.1
4,046,275 - OH686_19750 0.59 -0.1
4,046,275 - OH686_19750 0.59 +0.2
4,046,286 + OH686_19750 0.60 -1.6
4,046,286 + OH686_19750 0.60 +0.8
4,046,286 + OH686_19750 0.60 -0.3
4,046,287 - OH686_19750 0.60 +0.5
4,046,287 - OH686_19750 0.60 +0.0
4,046,301 + OH686_19750 0.62 +0.2
4,046,301 + OH686_19750 0.62 -0.1
4,046,301 + OH686_19750 0.62 -0.3
4,046,301 + OH686_19750 0.62 +0.2
4,046,302 - OH686_19750 0.62 -0.9
4,046,302 - OH686_19750 0.62 -0.8
4,046,302 - OH686_19750 0.62 -0.4
4,046,352 + OH686_19750 0.69 +0.2
4,046,352 + OH686_19750 0.69 +0.1
4,046,352 + OH686_19750 0.69 -0.9
4,046,352 + OH686_19750 0.69 -1.0
4,046,353 - OH686_19750 0.70 -0.4
4,046,353 - OH686_19750 0.70 -0.4
4,046,365 - OH686_19750 0.71 +0.6
4,046,377 - OH686_19750 0.73 +1.6
4,046,402 - OH686_19750 0.76 -0.3
4,046,523 + +0.5
4,046,524 - -0.5
4,046,524 - -1.5
4,046,524 - -0.5
4,046,524 - +0.0
4,046,524 - +0.0
4,046,662 + -0.5
4,046,662 + -1.0
4,046,662 + -0.2
4,046,662 + +0.2
4,046,663 - -0.2
4,046,663 - -1.0
4,046,663 - +0.3
4,046,736 + -0.6
4,046,736 + +0.1
4,046,737 - +0.1
4,046,737 - +0.6
4,046,766 + -0.2
4,046,767 - -0.8
4,046,767 - -0.5
4,046,767 - -0.7
4,046,767 - -1.2
4,046,870 + +1.0
4,046,870 + +0.7
4,046,871 - -1.9
4,047,087 + OH686_19755 0.27 -0.4
4,047,087 + OH686_19755 0.27 +0.1
4,047,087 + OH686_19755 0.27 -0.4
4,047,088 - OH686_19755 0.27 -1.0
4,047,088 - OH686_19755 0.27 -0.0
4,047,088 - OH686_19755 0.27 -0.2
4,047,088 - OH686_19755 0.27 +0.9
4,047,088 - OH686_19755 0.27 -1.2
4,047,088 - OH686_19755 0.27 -0.1
4,047,088 - OH686_19755 0.27 -1.6
4,047,310 - OH686_19755 0.44 -0.2
4,047,390 + OH686_19755 0.50 -0.5
4,047,390 + OH686_19755 0.50 -0.9
4,047,390 + OH686_19755 0.50 -1.0
4,047,390 + OH686_19755 0.50 -1.2
4,047,390 + OH686_19755 0.50 +0.1
4,047,390 + OH686_19755 0.50 -0.0
4,047,390 + OH686_19755 0.50 +0.6
4,047,391 - OH686_19755 0.50 -1.1
4,047,391 - OH686_19755 0.50 +0.3
4,047,391 - OH686_19755 0.50 -0.2
4,047,391 - OH686_19755 0.50 -0.5
4,047,391 - OH686_19755 0.50 +0.2
4,047,391 - OH686_19755 0.50 +0.6
4,047,391 - OH686_19755 0.50 +2.6
4,047,391 - OH686_19755 0.50 -1.3
4,047,405 + OH686_19755 0.51 +0.2
4,047,405 + OH686_19755 0.51 +0.2
4,047,405 + OH686_19755 0.51 +0.4
4,047,405 + OH686_19755 0.51 +0.5
4,047,405 + OH686_19755 0.51 -1.0
4,047,406 - OH686_19755 0.51 -0.5
4,047,406 - OH686_19755 0.51 -0.5
4,047,406 - OH686_19755 0.51 -0.1
4,047,406 - OH686_19755 0.51 -1.2
4,047,406 - OH686_19755 0.51 -0.0
4,047,876 + OH686_19755 0.88 -2.2
4,047,876 + OH686_19755 0.88 -0.7
4,047,876 + OH686_19755 0.88 +0.2
4,047,876 + OH686_19755 0.88 -1.0
4,047,876 + OH686_19755 0.88 -0.6
4,047,876 + OH686_19755 0.88 -0.6
4,047,876 + OH686_19755 0.88 +0.2
4,047,876 + OH686_19755 0.88 -0.4
4,047,876 + OH686_19755 0.88 -0.1
4,047,876 + OH686_19755 0.88 -0.2
4,047,876 + OH686_19755 0.88 -0.9
4,047,876 + OH686_19755 0.88 +0.0
4,047,877 - OH686_19755 0.88 +1.0
4,047,877 - OH686_19755 0.88 -0.0
4,047,877 - OH686_19755 0.88 -0.2
4,047,877 - OH686_19755 0.88 +0.2
4,047,877 - OH686_19755 0.88 +0.6
4,047,877 - OH686_19755 0.88 +0.0
4,047,877 - OH686_19755 0.88 -0.9
4,047,880 - OH686_19755 0.88 -0.3
4,048,210 + OH686_19760 0.19 +0.6
4,048,210 + OH686_19760 0.19 +0.2
4,048,210 + OH686_19760 0.19 -0.4
4,048,210 + OH686_19760 0.19 +0.1
4,048,210 + OH686_19760 0.19 +0.1
4,048,210 + OH686_19760 0.19 -0.6
4,048,211 - OH686_19760 0.19 +0.4
4,048,211 - OH686_19760 0.19 -0.7
4,048,211 - OH686_19760 0.19 +0.2
4,048,211 - OH686_19760 0.19 -1.5
4,048,250 + OH686_19760 0.25 +0.1
4,048,250 + OH686_19760 0.25 -0.4
4,048,250 + OH686_19760 0.25 +0.6
4,048,250 + OH686_19760 0.25 +1.4
4,048,250 + OH686_19760 0.25 -0.1
4,048,250 + OH686_19760 0.25 +0.5
4,048,250 + OH686_19760 0.25 +0.2
4,048,250 + OH686_19760 0.25 +0.2
4,048,250 + OH686_19760 0.25 +0.2
4,048,250 + OH686_19760 0.25 -0.4
4,048,250 + OH686_19760 0.25 -0.5
4,048,250 + OH686_19760 0.25 +0.2
4,048,250 + OH686_19760 0.25 +1.0
4,048,250 + OH686_19760 0.25 -0.2
4,048,251 - OH686_19760 0.25 -0.5
4,048,251 - OH686_19760 0.25 +0.3
4,048,251 - OH686_19760 0.25 -1.0
4,048,251 - OH686_19760 0.25 -0.7
4,048,251 - OH686_19760 0.25 -0.5
4,048,251 - OH686_19760 0.25 -0.0
4,048,251 - OH686_19760 0.25 -0.3
4,048,251 - OH686_19760 0.25 +0.2
4,048,251 - OH686_19760 0.25 -0.1
4,048,251 - OH686_19760 0.25 +0.5
4,048,251 - OH686_19760 0.25 +0.8
4,048,251 - OH686_19760 0.25 -0.6
4,048,251 - OH686_19760 0.25 +0.1
4,048,251 - OH686_19760 0.25 -0.2
4,048,251 - OH686_19760 0.25 +0.5
4,048,251 - OH686_19760 0.25 -0.7
4,048,251 - OH686_19760 0.25 -1.0
4,048,251 - OH686_19760 0.25 -0.2
4,048,399 + OH686_19760 0.48 -0.4
4,048,462 + OH686_19760 0.58 -0.1
4,048,463 - OH686_19760 0.58 +0.4
4,048,463 - OH686_19760 0.58 -0.3
4,048,463 - OH686_19760 0.58 -1.0
4,048,878 + OH686_19765 0.37 -0.2
4,048,878 + OH686_19765 0.37 -1.6
4,048,878 + OH686_19765 0.37 +0.5
4,048,879 - OH686_19765 0.37 -0.9
4,048,879 - OH686_19765 0.37 -1.2
4,048,879 - OH686_19765 0.37 -1.7

Or see this region's nucleotide sequence