Strain Fitness in Pseudomonas sp. S08-1 around OH686_19640

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_19630 and OH686_19635 are separated by 124 nucleotidesOH686_19635 and OH686_19640 are separated by 170 nucleotidesOH686_19640 and OH686_19645 are separated by 160 nucleotidesOH686_19645 and OH686_19650 are separated by 14 nucleotidesOH686_19650 and OH686_19655 are separated by 226 nucleotides OH686_19630: OH686_19630 - Lysophospholipid transporter LplT / 2-acylglycerophosphoethanolamine acyltransferase , at 4,023,226 to 4,025,097 _19630 OH686_19635: OH686_19635 - small multidrug resistance family (SMR) protein, at 4,025,222 to 4,025,536 _19635 OH686_19640: OH686_19640 - DNA recombination-dependent growth factor RdgC, at 4,025,707 to 4,026,627 _19640 OH686_19645: OH686_19645 - tRNA-Val, at 4,026,788 to 4,026,863 _19645 OH686_19650: OH686_19650 - tRNA-Asp, at 4,026,878 to 4,026,954 _19650 OH686_19655: OH686_19655 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB , at 4,027,181 to 4,027,897 _19655 Position (kb) 4025 4026 4027Strain fitness (log2 ratio) -2 -1 0 1 2at 4024.791 kb on + strand, within OH686_19630at 4024.802 kb on - strand, within OH686_19630at 4025.012 kb on + strandat 4025.012 kb on + strandat 4025.012 kb on + strandat 4025.012 kb on + strandat 4025.012 kb on + strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.013 kb on - strandat 4025.216 kb on - strandat 4025.268 kb on - strand, within OH686_19635at 4025.268 kb on - strand, within OH686_19635at 4025.361 kb on + strand, within OH686_19635at 4025.362 kb on - strand, within OH686_19635at 4025.434 kb on + strand, within OH686_19635at 4025.434 kb on + strand, within OH686_19635at 4025.435 kb on - strand, within OH686_19635at 4025.472 kb on + strand, within OH686_19635at 4025.472 kb on + strand, within OH686_19635at 4025.472 kb on + strand, within OH686_19635at 4025.472 kb on + strand, within OH686_19635at 4025.473 kb on - strand, within OH686_19635at 4025.473 kb on - strand, within OH686_19635at 4025.473 kb on - strand, within OH686_19635at 4025.473 kb on - strand, within OH686_19635at 4025.473 kb on - strand, within OH686_19635at 4025.473 kb on - strand, within OH686_19635at 4025.473 kb on - strand, within OH686_19635at 4025.542 kb on + strandat 4025.550 kb on + strandat 4025.550 kb on + strandat 4025.551 kb on - strandat 4025.551 kb on - strandat 4026.267 kb on + strand, within OH686_19640at 4026.267 kb on + strand, within OH686_19640at 4026.329 kb on + strand, within OH686_19640at 4026.329 kb on + strand, within OH686_19640at 4026.329 kb on + strand, within OH686_19640at 4026.329 kb on + strand, within OH686_19640at 4026.503 kb on + strand, within OH686_19640at 4026.503 kb on + strand, within OH686_19640at 4026.503 kb on + strand, within OH686_19640at 4026.503 kb on + strand, within OH686_19640at 4026.504 kb on - strand, within OH686_19640at 4026.504 kb on - strand, within OH686_19640at 4026.646 kb on + strandat 4026.646 kb on + strandat 4026.647 kb on - strandat 4026.647 kb on - strandat 4026.647 kb on - strandat 4026.663 kb on - strandat 4026.663 kb on - strandat 4026.663 kb on - strandat 4026.955 kb on + strandat 4026.955 kb on + strandat 4026.955 kb on + strandat 4026.955 kb on + strandat 4026.955 kb on + strandat 4026.955 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.959 kb on + strandat 4026.970 kb on + strandat 4026.970 kb on + strandat 4026.970 kb on + strandat 4026.970 kb on + strandat 4027.079 kb on + strandat 4027.099 kb on + strandat 4027.100 kb on - strandat 4027.100 kb on - strandat 4027.100 kb on - strandat 4027.100 kb on - strandat 4027.133 kb on + strandat 4027.133 kb on + strandat 4027.134 kb on - strandat 4027.134 kb on - strandat 4027.134 kb on - strandat 4027.164 kb on + strandat 4027.164 kb on + strandat 4027.164 kb on + strandat 4027.164 kb on + strandat 4027.164 kb on + strandat 4027.164 kb on + strandat 4027.165 kb on - strandat 4027.165 kb on - strandat 4027.197 kb on + strandat 4027.227 kb on + strandat 4027.228 kb on - strandat 4027.292 kb on + strand, within OH686_19655at 4027.293 kb on - strand, within OH686_19655at 4027.565 kb on + strand, within OH686_19655at 4027.565 kb on + strand, within OH686_19655at 4027.566 kb on - strand, within OH686_19655at 4027.566 kb on - strand, within OH686_19655at 4027.566 kb on - strand, within OH686_19655at 4027.566 kb on - strand, within OH686_19655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
4,024,791 + OH686_19630 0.84 -0.0
4,024,802 - OH686_19630 0.84 -0.7
4,025,012 + -0.2
4,025,012 + +0.2
4,025,012 + -0.6
4,025,012 + +0.1
4,025,012 + -0.2
4,025,013 - -1.1
4,025,013 - +1.1
4,025,013 - +0.9
4,025,013 - +0.2
4,025,013 - -0.4
4,025,013 - -0.3
4,025,013 - -0.3
4,025,013 - -0.5
4,025,013 - +0.4
4,025,013 - +0.4
4,025,013 - -1.0
4,025,216 - -0.2
4,025,268 - OH686_19635 0.15 -0.2
4,025,268 - OH686_19635 0.15 +0.3
4,025,361 + OH686_19635 0.44 -0.5
4,025,362 - OH686_19635 0.44 -0.2
4,025,434 + OH686_19635 0.67 +0.0
4,025,434 + OH686_19635 0.67 +0.0
4,025,435 - OH686_19635 0.68 -0.7
4,025,472 + OH686_19635 0.79 +0.5
4,025,472 + OH686_19635 0.79 +0.8
4,025,472 + OH686_19635 0.79 +1.1
4,025,472 + OH686_19635 0.79 -0.1
4,025,473 - OH686_19635 0.80 +1.1
4,025,473 - OH686_19635 0.80 +0.0
4,025,473 - OH686_19635 0.80 -0.0
4,025,473 - OH686_19635 0.80 -0.0
4,025,473 - OH686_19635 0.80 +0.0
4,025,473 - OH686_19635 0.80 -2.3
4,025,473 - OH686_19635 0.80 +0.7
4,025,542 + -0.0
4,025,550 + -0.1
4,025,550 + +1.7
4,025,551 - +0.7
4,025,551 - +0.3
4,026,267 + OH686_19640 0.61 -0.5
4,026,267 + OH686_19640 0.61 -0.3
4,026,329 + OH686_19640 0.68 -0.8
4,026,329 + OH686_19640 0.68 +1.8
4,026,329 + OH686_19640 0.68 +0.5
4,026,329 + OH686_19640 0.68 +0.8
4,026,503 + OH686_19640 0.86 -0.3
4,026,503 + OH686_19640 0.86 -0.5
4,026,503 + OH686_19640 0.86 +1.8
4,026,503 + OH686_19640 0.86 -1.4
4,026,504 - OH686_19640 0.87 -0.2
4,026,504 - OH686_19640 0.87 +0.0
4,026,646 + +0.4
4,026,646 + +0.7
4,026,647 - -0.1
4,026,647 - +1.4
4,026,647 - -1.2
4,026,663 - -0.2
4,026,663 - -0.2
4,026,663 - +0.3
4,026,955 + +1.1
4,026,955 + +0.5
4,026,955 + -0.1
4,026,955 + -2.7
4,026,955 + +0.6
4,026,955 + -0.4
4,026,959 + +0.7
4,026,959 + +0.3
4,026,959 + +0.2
4,026,959 + +0.5
4,026,959 + -0.2
4,026,959 + +0.0
4,026,959 + +0.3
4,026,959 + +1.8
4,026,959 + +0.5
4,026,959 + +0.2
4,026,959 + -1.0
4,026,959 + -0.0
4,026,959 + +1.1
4,026,959 + -0.3
4,026,959 + -0.2
4,026,959 + +0.2
4,026,959 + +0.7
4,026,959 + -0.4
4,026,970 + +0.6
4,026,970 + -0.1
4,026,970 + +0.7
4,026,970 + +0.2
4,027,079 + +0.3
4,027,099 + +0.3
4,027,100 - -0.2
4,027,100 - -1.1
4,027,100 - -0.3
4,027,100 - +0.5
4,027,133 + +2.0
4,027,133 + -0.1
4,027,134 - +0.1
4,027,134 - +0.6
4,027,134 - -1.2
4,027,164 + +1.4
4,027,164 + -0.7
4,027,164 + -0.0
4,027,164 + -1.2
4,027,164 + -0.2
4,027,164 + -1.6
4,027,165 - +0.8
4,027,165 - +0.6
4,027,197 + -0.2
4,027,227 + +0.0
4,027,228 - +0.4
4,027,292 + OH686_19655 0.15 -0.8
4,027,293 - OH686_19655 0.16 -0.5
4,027,565 + OH686_19655 0.54 -0.4
4,027,565 + OH686_19655 0.54 +0.2
4,027,566 - OH686_19655 0.54 +0.5
4,027,566 - OH686_19655 0.54 +0.1
4,027,566 - OH686_19655 0.54 -1.0
4,027,566 - OH686_19655 0.54 +0.6

Or see this region's nucleotide sequence