Strain Fitness in Pseudomonas sp. S08-1 around OH686_18425

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_18415 and OH686_18420 are separated by 53 nucleotidesOH686_18420 and OH686_18425 are separated by 36 nucleotidesOH686_18425 and OH686_18430 are separated by 15 nucleotides OH686_18415: OH686_18415 - O-acetylhomoserine sulfhydrylase , at 3,827,020 to 3,828,333 _18415 OH686_18420: OH686_18420 - COGs COG3558, at 3,828,387 to 3,828,863 _18420 OH686_18425: OH686_18425 - hypothetical protein, at 3,828,900 to 3,829,139 _18425 OH686_18430: OH686_18430 - probable iron-sulfur binding protein, at 3,829,155 to 3,831,209 _18430 Position (kb) 3828 3829 3830Strain fitness (log2 ratio) -2 -1 0 1 2at 3827.914 kb on + strand, within OH686_18415at 3827.914 kb on + strand, within OH686_18415at 3827.914 kb on + strand, within OH686_18415at 3827.915 kb on - strand, within OH686_18415at 3827.915 kb on - strand, within OH686_18415at 3827.915 kb on - strand, within OH686_18415at 3827.915 kb on - strand, within OH686_18415at 3827.915 kb on - strand, within OH686_18415at 3827.915 kb on - strand, within OH686_18415at 3827.917 kb on + strand, within OH686_18415at 3827.918 kb on - strand, within OH686_18415at 3827.965 kb on + strand, within OH686_18415at 3827.965 kb on + strand, within OH686_18415at 3827.965 kb on + strand, within OH686_18415at 3827.965 kb on + strand, within OH686_18415at 3827.965 kb on + strand, within OH686_18415at 3827.965 kb on + strand, within OH686_18415at 3827.965 kb on + strand, within OH686_18415at 3827.965 kb on + strand, within OH686_18415at 3827.966 kb on - strand, within OH686_18415at 3827.966 kb on - strand, within OH686_18415at 3827.966 kb on - strand, within OH686_18415at 3827.966 kb on - strand, within OH686_18415at 3827.966 kb on - strand, within OH686_18415at 3827.966 kb on - strand, within OH686_18415at 3827.966 kb on - strand, within OH686_18415at 3828.131 kb on - strand, within OH686_18415at 3828.142 kb on + strand, within OH686_18415at 3828.143 kb on - strand, within OH686_18415at 3828.143 kb on - strand, within OH686_18415at 3828.221 kb on - strandat 3828.304 kb on + strandat 3828.304 kb on + strandat 3828.304 kb on + strandat 3828.304 kb on + strandat 3828.304 kb on + strandat 3828.305 kb on - strandat 3828.305 kb on - strandat 3828.305 kb on - strandat 3828.305 kb on - strandat 3828.305 kb on - strandat 3828.305 kb on - strandat 3828.305 kb on - strandat 3828.305 kb on - strandat 3828.305 kb on - strandat 3828.305 kb on - strandat 3828.307 kb on + strandat 3828.307 kb on + strandat 3828.308 kb on - strandat 3828.308 kb on - strandat 3828.308 kb on - strandat 3828.308 kb on - strandat 3828.544 kb on + strand, within OH686_18420at 3828.545 kb on - strand, within OH686_18420at 3828.583 kb on + strand, within OH686_18420at 3828.583 kb on + strand, within OH686_18420at 3828.583 kb on + strand, within OH686_18420at 3828.584 kb on - strand, within OH686_18420at 3828.584 kb on - strand, within OH686_18420at 3828.589 kb on + strand, within OH686_18420at 3828.740 kb on + strand, within OH686_18420at 3828.741 kb on - strand, within OH686_18420at 3828.741 kb on - strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.742 kb on + strand, within OH686_18420at 3828.743 kb on - strand, within OH686_18420at 3828.743 kb on - strand, within OH686_18420at 3828.743 kb on - strand, within OH686_18420at 3828.743 kb on - strand, within OH686_18420at 3828.743 kb on - strand, within OH686_18420at 3828.743 kb on - strand, within OH686_18420at 3828.743 kb on - strand, within OH686_18420at 3828.957 kb on + strand, within OH686_18425at 3828.957 kb on + strand, within OH686_18425at 3828.957 kb on + strand, within OH686_18425at 3828.957 kb on + strand, within OH686_18425at 3828.957 kb on + strand, within OH686_18425at 3828.958 kb on - strand, within OH686_18425at 3828.958 kb on - strand, within OH686_18425at 3828.997 kb on + strand, within OH686_18425at 3828.998 kb on - strand, within OH686_18425at 3829.063 kb on - strand, within OH686_18425at 3829.063 kb on - strand, within OH686_18425at 3829.063 kb on - strand, within OH686_18425at 3829.160 kb on + strandat 3829.161 kb on - strandat 3829.262 kb on - strandat 3829.414 kb on + strand, within OH686_18430at 3829.414 kb on + strand, within OH686_18430at 3829.414 kb on + strand, within OH686_18430at 3829.414 kb on + strand, within OH686_18430at 3829.414 kb on + strand, within OH686_18430at 3829.415 kb on - strand, within OH686_18430at 3829.415 kb on - strand, within OH686_18430at 3829.415 kb on - strand, within OH686_18430at 3829.415 kb on - strand, within OH686_18430at 3829.415 kb on - strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.555 kb on + strand, within OH686_18430at 3829.556 kb on - strand, within OH686_18430at 3829.556 kb on - strand, within OH686_18430at 3829.556 kb on - strand, within OH686_18430at 3829.556 kb on - strand, within OH686_18430at 3829.556 kb on - strand, within OH686_18430at 3829.556 kb on - strand, within OH686_18430at 3829.591 kb on + strand, within OH686_18430at 3829.591 kb on + strand, within OH686_18430at 3829.591 kb on + strand, within OH686_18430at 3829.591 kb on + strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.592 kb on - strand, within OH686_18430at 3829.600 kb on + strand, within OH686_18430at 3829.600 kb on + strand, within OH686_18430at 3829.600 kb on + strand, within OH686_18430at 3829.660 kb on + strand, within OH686_18430at 3829.660 kb on + strand, within OH686_18430at 3829.661 kb on - strand, within OH686_18430at 3829.661 kb on - strand, within OH686_18430at 3829.806 kb on - strand, within OH686_18430at 3830.030 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.062 kb on + strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430at 3830.063 kb on - strand, within OH686_18430

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,827,914 + OH686_18415 0.68 +1.8
3,827,914 + OH686_18415 0.68 +0.3
3,827,914 + OH686_18415 0.68 +0.1
3,827,915 - OH686_18415 0.68 -0.3
3,827,915 - OH686_18415 0.68 -0.7
3,827,915 - OH686_18415 0.68 -0.1
3,827,915 - OH686_18415 0.68 -0.8
3,827,915 - OH686_18415 0.68 +0.1
3,827,915 - OH686_18415 0.68 +0.5
3,827,917 + OH686_18415 0.68 -1.2
3,827,918 - OH686_18415 0.68 +0.4
3,827,965 + OH686_18415 0.72 -0.4
3,827,965 + OH686_18415 0.72 -0.8
3,827,965 + OH686_18415 0.72 +0.4
3,827,965 + OH686_18415 0.72 -0.6
3,827,965 + OH686_18415 0.72 -0.7
3,827,965 + OH686_18415 0.72 -0.3
3,827,965 + OH686_18415 0.72 -0.4
3,827,965 + OH686_18415 0.72 -1.1
3,827,966 - OH686_18415 0.72 -0.5
3,827,966 - OH686_18415 0.72 +0.6
3,827,966 - OH686_18415 0.72 -0.1
3,827,966 - OH686_18415 0.72 +0.4
3,827,966 - OH686_18415 0.72 -0.3
3,827,966 - OH686_18415 0.72 -1.1
3,827,966 - OH686_18415 0.72 -0.1
3,828,131 - OH686_18415 0.85 +1.0
3,828,142 + OH686_18415 0.85 +0.4
3,828,143 - OH686_18415 0.85 +0.4
3,828,143 - OH686_18415 0.85 +0.2
3,828,221 - -0.4
3,828,304 + -0.2
3,828,304 + +0.4
3,828,304 + -0.3
3,828,304 + -0.3
3,828,304 + +0.2
3,828,305 - -0.4
3,828,305 - -0.4
3,828,305 - +0.4
3,828,305 - -1.3
3,828,305 - -1.1
3,828,305 - +1.0
3,828,305 - -0.9
3,828,305 - +0.5
3,828,305 - -0.5
3,828,305 - +0.5
3,828,307 + +0.3
3,828,307 + +0.3
3,828,308 - +0.6
3,828,308 - -0.3
3,828,308 - -0.2
3,828,308 - +1.8
3,828,544 + OH686_18420 0.33 +0.7
3,828,545 - OH686_18420 0.33 -0.4
3,828,583 + OH686_18420 0.41 +0.8
3,828,583 + OH686_18420 0.41 +0.0
3,828,583 + OH686_18420 0.41 -0.2
3,828,584 - OH686_18420 0.41 +1.3
3,828,584 - OH686_18420 0.41 +0.1
3,828,589 + OH686_18420 0.42 +0.3
3,828,740 + OH686_18420 0.74 -0.7
3,828,741 - OH686_18420 0.74 +0.0
3,828,741 - OH686_18420 0.74 -0.2
3,828,742 + OH686_18420 0.74 -0.2
3,828,742 + OH686_18420 0.74 -0.3
3,828,742 + OH686_18420 0.74 -1.5
3,828,742 + OH686_18420 0.74 -0.5
3,828,742 + OH686_18420 0.74 +0.2
3,828,742 + OH686_18420 0.74 -1.7
3,828,742 + OH686_18420 0.74 -1.4
3,828,742 + OH686_18420 0.74 +0.4
3,828,742 + OH686_18420 0.74 +0.0
3,828,742 + OH686_18420 0.74 -0.2
3,828,743 - OH686_18420 0.75 -1.1
3,828,743 - OH686_18420 0.75 +0.1
3,828,743 - OH686_18420 0.75 +0.7
3,828,743 - OH686_18420 0.75 -0.4
3,828,743 - OH686_18420 0.75 -0.6
3,828,743 - OH686_18420 0.75 -1.4
3,828,743 - OH686_18420 0.75 +0.5
3,828,957 + OH686_18425 0.24 +0.1
3,828,957 + OH686_18425 0.24 +0.4
3,828,957 + OH686_18425 0.24 -0.3
3,828,957 + OH686_18425 0.24 -0.5
3,828,957 + OH686_18425 0.24 -0.6
3,828,958 - OH686_18425 0.24 -0.3
3,828,958 - OH686_18425 0.24 -0.1
3,828,997 + OH686_18425 0.40 +0.4
3,828,998 - OH686_18425 0.41 +0.3
3,829,063 - OH686_18425 0.68 -0.7
3,829,063 - OH686_18425 0.68 -0.9
3,829,063 - OH686_18425 0.68 -0.5
3,829,160 + -0.3
3,829,161 - -0.2
3,829,262 - +1.0
3,829,414 + OH686_18430 0.13 -0.6
3,829,414 + OH686_18430 0.13 -0.3
3,829,414 + OH686_18430 0.13 -0.3
3,829,414 + OH686_18430 0.13 -0.8
3,829,414 + OH686_18430 0.13 +0.2
3,829,415 - OH686_18430 0.13 +0.7
3,829,415 - OH686_18430 0.13 -0.2
3,829,415 - OH686_18430 0.13 -1.0
3,829,415 - OH686_18430 0.13 -0.1
3,829,415 - OH686_18430 0.13 -1.4
3,829,555 + OH686_18430 0.19 -0.4
3,829,555 + OH686_18430 0.19 -0.2
3,829,555 + OH686_18430 0.19 +1.5
3,829,555 + OH686_18430 0.19 +1.6
3,829,555 + OH686_18430 0.19 +0.8
3,829,555 + OH686_18430 0.19 -0.1
3,829,555 + OH686_18430 0.19 -0.1
3,829,555 + OH686_18430 0.19 -1.0
3,829,555 + OH686_18430 0.19 -0.1
3,829,555 + OH686_18430 0.19 +0.7
3,829,555 + OH686_18430 0.19 +0.0
3,829,555 + OH686_18430 0.19 +0.3
3,829,555 + OH686_18430 0.19 +0.4
3,829,555 + OH686_18430 0.19 -0.1
3,829,555 + OH686_18430 0.19 +0.2
3,829,556 - OH686_18430 0.20 +0.6
3,829,556 - OH686_18430 0.20 -0.9
3,829,556 - OH686_18430 0.20 -0.4
3,829,556 - OH686_18430 0.20 -0.2
3,829,556 - OH686_18430 0.20 +0.3
3,829,556 - OH686_18430 0.20 -0.5
3,829,591 + OH686_18430 0.21 -0.7
3,829,591 + OH686_18430 0.21 +1.2
3,829,591 + OH686_18430 0.21 -0.6
3,829,591 + OH686_18430 0.21 +0.3
3,829,592 - OH686_18430 0.21 +1.4
3,829,592 - OH686_18430 0.21 -0.2
3,829,592 - OH686_18430 0.21 +0.3
3,829,592 - OH686_18430 0.21 -0.4
3,829,592 - OH686_18430 0.21 +0.6
3,829,592 - OH686_18430 0.21 +0.5
3,829,592 - OH686_18430 0.21 -0.8
3,829,592 - OH686_18430 0.21 +0.4
3,829,592 - OH686_18430 0.21 -0.2
3,829,592 - OH686_18430 0.21 +0.3
3,829,600 + OH686_18430 0.22 -0.2
3,829,600 + OH686_18430 0.22 -0.6
3,829,600 + OH686_18430 0.22 -0.3
3,829,660 + OH686_18430 0.25 +0.1
3,829,660 + OH686_18430 0.25 +0.2
3,829,661 - OH686_18430 0.25 +0.3
3,829,661 - OH686_18430 0.25 -0.9
3,829,806 - OH686_18430 0.32 +0.6
3,830,030 + OH686_18430 0.43 +0.6
3,830,062 + OH686_18430 0.44 -0.1
3,830,062 + OH686_18430 0.44 +0.2
3,830,062 + OH686_18430 0.44 +2.0
3,830,062 + OH686_18430 0.44 +0.9
3,830,062 + OH686_18430 0.44 -0.6
3,830,062 + OH686_18430 0.44 +0.3
3,830,062 + OH686_18430 0.44 -0.6
3,830,062 + OH686_18430 0.44 +0.8
3,830,062 + OH686_18430 0.44 -0.7
3,830,062 + OH686_18430 0.44 +0.7
3,830,062 + OH686_18430 0.44 +0.2
3,830,063 - OH686_18430 0.44 -0.1
3,830,063 - OH686_18430 0.44 -2.2
3,830,063 - OH686_18430 0.44 +0.1
3,830,063 - OH686_18430 0.44 +0.4
3,830,063 - OH686_18430 0.44 -0.1
3,830,063 - OH686_18430 0.44 -0.1
3,830,063 - OH686_18430 0.44 +0.9
3,830,063 - OH686_18430 0.44 +1.3
3,830,063 - OH686_18430 0.44 +0.2
3,830,063 - OH686_18430 0.44 -1.4
3,830,063 - OH686_18430 0.44 -0.3
3,830,063 - OH686_18430 0.44 +0.9
3,830,063 - OH686_18430 0.44 +0.8
3,830,063 - OH686_18430 0.44 +0.2
3,830,063 - OH686_18430 0.44 +0.0

Or see this region's nucleotide sequence