Strain Fitness in Pseudomonas sp. S08-1 around OH686_17915

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_17910 and OH686_17915 are separated by 28 nucleotidesOH686_17915 and OH686_17920 are separated by 204 nucleotides OH686_17910: OH686_17910 - 3-ketoacyl-CoA thiolase or Acetyl-CoA acetyltransferase , at 3,733,093 to 3,734,277 _17910 OH686_17915: OH686_17915 - putative 4-hydroxybenzoyl-CoA thioesterase, at 3,734,306 to 3,734,740 _17915 OH686_17920: OH686_17920 - Alcohol dehydrogenase, at 3,734,945 to 3,736,108 _17920 Position (kb) 3734 3735Strain fitness (log2 ratio) -2 -1 0 1 2at 3733.796 kb on + strand, within OH686_17910at 3733.796 kb on + strand, within OH686_17910at 3733.797 kb on - strand, within OH686_17910at 3733.797 kb on - strand, within OH686_17910at 3733.797 kb on - strand, within OH686_17910at 3733.797 kb on - strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.838 kb on + strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.839 kb on - strand, within OH686_17910at 3733.874 kb on + strand, within OH686_17910at 3733.875 kb on - strand, within OH686_17910at 3734.304 kb on + strandat 3734.305 kb on - strandat 3734.451 kb on + strand, within OH686_17915at 3734.451 kb on + strand, within OH686_17915at 3734.452 kb on - strand, within OH686_17915at 3734.486 kb on + strand, within OH686_17915at 3734.529 kb on + strand, within OH686_17915at 3734.529 kb on + strand, within OH686_17915at 3734.530 kb on - strand, within OH686_17915at 3734.530 kb on - strand, within OH686_17915at 3734.530 kb on - strand, within OH686_17915at 3734.530 kb on - strand, within OH686_17915at 3734.530 kb on - strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.604 kb on + strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.605 kb on - strand, within OH686_17915at 3734.634 kb on + strand, within OH686_17915at 3734.637 kb on + strand, within OH686_17915at 3734.638 kb on - strand, within OH686_17915at 3734.638 kb on - strand, within OH686_17915at 3734.638 kb on - strand, within OH686_17915at 3734.661 kb on + strand, within OH686_17915at 3734.709 kb on + strandat 3734.710 kb on - strandat 3734.710 kb on - strandat 3734.770 kb on - strandat 3734.792 kb on + strandat 3734.811 kb on + strandat 3734.811 kb on + strandat 3734.811 kb on + strandat 3734.811 kb on + strandat 3734.812 kb on - strandat 3734.812 kb on - strandat 3734.812 kb on - strandat 3734.812 kb on - strandat 3734.812 kb on - strandat 3734.812 kb on - strandat 3734.812 kb on - strandat 3734.812 kb on - strandat 3734.812 kb on - strandat 3734.812 kb on - strandat 3734.821 kb on + strandat 3734.821 kb on + strandat 3734.822 kb on - strandat 3734.822 kb on - strandat 3734.822 kb on - strandat 3734.878 kb on + strandat 3734.878 kb on + strandat 3734.878 kb on + strandat 3734.878 kb on + strandat 3734.878 kb on + strandat 3734.878 kb on + strandat 3734.878 kb on + strandat 3734.878 kb on + strandat 3734.878 kb on + strandat 3734.878 kb on + strandat 3734.879 kb on - strandat 3734.879 kb on - strandat 3734.879 kb on - strandat 3734.879 kb on - strandat 3734.879 kb on - strandat 3734.879 kb on - strandat 3734.885 kb on + strandat 3734.885 kb on + strandat 3734.886 kb on - strandat 3734.886 kb on - strandat 3734.915 kb on + strandat 3734.916 kb on - strandat 3734.942 kb on + strandat 3734.942 kb on + strandat 3734.942 kb on + strandat 3734.942 kb on + strandat 3734.942 kb on + strandat 3734.942 kb on + strandat 3734.942 kb on + strandat 3734.943 kb on - strandat 3734.943 kb on - strandat 3734.943 kb on - strandat 3734.943 kb on - strandat 3734.943 kb on - strandat 3734.943 kb on - strandat 3734.943 kb on - strandat 3734.943 kb on - strandat 3734.943 kb on - strandat 3734.949 kb on + strandat 3734.950 kb on - strandat 3735.204 kb on + strand, within OH686_17920at 3735.204 kb on + strand, within OH686_17920at 3735.204 kb on + strand, within OH686_17920at 3735.204 kb on + strand, within OH686_17920at 3735.262 kb on + strand, within OH686_17920at 3735.280 kb on + strand, within OH686_17920at 3735.280 kb on + strand, within OH686_17920at 3735.280 kb on + strand, within OH686_17920at 3735.281 kb on - strand, within OH686_17920at 3735.304 kb on - strand, within OH686_17920at 3735.498 kb on + strand, within OH686_17920at 3735.498 kb on + strand, within OH686_17920at 3735.498 kb on + strand, within OH686_17920at 3735.499 kb on - strand, within OH686_17920at 3735.499 kb on - strand, within OH686_17920at 3735.499 kb on - strand, within OH686_17920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
3,733,796 + OH686_17910 0.59 -0.7
3,733,796 + OH686_17910 0.59 -0.2
3,733,797 - OH686_17910 0.59 -1.1
3,733,797 - OH686_17910 0.59 +0.2
3,733,797 - OH686_17910 0.59 +0.2
3,733,797 - OH686_17910 0.59 +0.2
3,733,838 + OH686_17910 0.63 +0.2
3,733,838 + OH686_17910 0.63 +0.1
3,733,838 + OH686_17910 0.63 -0.2
3,733,838 + OH686_17910 0.63 +0.1
3,733,838 + OH686_17910 0.63 -0.6
3,733,838 + OH686_17910 0.63 +0.2
3,733,838 + OH686_17910 0.63 +0.5
3,733,838 + OH686_17910 0.63 +1.2
3,733,838 + OH686_17910 0.63 +0.3
3,733,838 + OH686_17910 0.63 +0.3
3,733,838 + OH686_17910 0.63 -0.7
3,733,838 + OH686_17910 0.63 -2.1
3,733,838 + OH686_17910 0.63 +0.7
3,733,838 + OH686_17910 0.63 -0.2
3,733,838 + OH686_17910 0.63 +0.2
3,733,838 + OH686_17910 0.63 -0.2
3,733,838 + OH686_17910 0.63 -1.6
3,733,838 + OH686_17910 0.63 +0.1
3,733,838 + OH686_17910 0.63 +0.1
3,733,838 + OH686_17910 0.63 -0.4
3,733,838 + OH686_17910 0.63 +0.6
3,733,838 + OH686_17910 0.63 -0.3
3,733,838 + OH686_17910 0.63 -0.5
3,733,839 - OH686_17910 0.63 +1.0
3,733,839 - OH686_17910 0.63 +0.7
3,733,839 - OH686_17910 0.63 +0.2
3,733,839 - OH686_17910 0.63 +0.2
3,733,839 - OH686_17910 0.63 +0.6
3,733,839 - OH686_17910 0.63 -0.3
3,733,839 - OH686_17910 0.63 +0.3
3,733,839 - OH686_17910 0.63 +0.1
3,733,839 - OH686_17910 0.63 +0.9
3,733,839 - OH686_17910 0.63 -0.3
3,733,839 - OH686_17910 0.63 +0.7
3,733,839 - OH686_17910 0.63 -0.6
3,733,839 - OH686_17910 0.63 -0.4
3,733,839 - OH686_17910 0.63 +0.1
3,733,839 - OH686_17910 0.63 -0.1
3,733,839 - OH686_17910 0.63 +1.4
3,733,839 - OH686_17910 0.63 +0.4
3,733,839 - OH686_17910 0.63 +1.4
3,733,839 - OH686_17910 0.63 -0.1
3,733,874 + OH686_17910 0.66 +0.1
3,733,875 - OH686_17910 0.66 -0.2
3,734,304 + +0.1
3,734,305 - -0.9
3,734,451 + OH686_17915 0.33 +1.3
3,734,451 + OH686_17915 0.33 -0.5
3,734,452 - OH686_17915 0.34 +0.1
3,734,486 + OH686_17915 0.41 -0.3
3,734,529 + OH686_17915 0.51 +0.1
3,734,529 + OH686_17915 0.51 -0.9
3,734,530 - OH686_17915 0.51 +0.0
3,734,530 - OH686_17915 0.51 +0.3
3,734,530 - OH686_17915 0.51 +0.5
3,734,530 - OH686_17915 0.51 +0.5
3,734,530 - OH686_17915 0.51 +0.0
3,734,604 + OH686_17915 0.69 +0.2
3,734,604 + OH686_17915 0.69 -0.2
3,734,604 + OH686_17915 0.69 -0.3
3,734,604 + OH686_17915 0.69 +0.0
3,734,604 + OH686_17915 0.69 +0.1
3,734,604 + OH686_17915 0.69 -0.3
3,734,604 + OH686_17915 0.69 +0.1
3,734,604 + OH686_17915 0.69 -0.9
3,734,604 + OH686_17915 0.69 +0.1
3,734,604 + OH686_17915 0.69 -0.6
3,734,604 + OH686_17915 0.69 +0.3
3,734,604 + OH686_17915 0.69 +0.8
3,734,604 + OH686_17915 0.69 -1.0
3,734,604 + OH686_17915 0.69 -0.0
3,734,605 - OH686_17915 0.69 +0.3
3,734,605 - OH686_17915 0.69 -0.0
3,734,605 - OH686_17915 0.69 +0.0
3,734,605 - OH686_17915 0.69 +0.1
3,734,605 - OH686_17915 0.69 -0.6
3,734,605 - OH686_17915 0.69 -0.2
3,734,605 - OH686_17915 0.69 +0.1
3,734,605 - OH686_17915 0.69 -0.8
3,734,605 - OH686_17915 0.69 -0.2
3,734,605 - OH686_17915 0.69 -0.2
3,734,605 - OH686_17915 0.69 -0.1
3,734,605 - OH686_17915 0.69 -0.5
3,734,605 - OH686_17915 0.69 +0.8
3,734,605 - OH686_17915 0.69 +0.4
3,734,605 - OH686_17915 0.69 +0.2
3,734,634 + OH686_17915 0.75 +0.8
3,734,637 + OH686_17915 0.76 +1.9
3,734,638 - OH686_17915 0.76 +0.1
3,734,638 - OH686_17915 0.76 +1.2
3,734,638 - OH686_17915 0.76 -0.1
3,734,661 + OH686_17915 0.82 +0.8
3,734,709 + +0.3
3,734,710 - -0.1
3,734,710 - +0.0
3,734,770 - -2.3
3,734,792 + -2.2
3,734,811 + +0.4
3,734,811 + -0.4
3,734,811 + +0.3
3,734,811 + +0.1
3,734,812 - -2.0
3,734,812 - +0.3
3,734,812 - -1.9
3,734,812 - +0.1
3,734,812 - +0.2
3,734,812 - +0.2
3,734,812 - +0.3
3,734,812 - +1.0
3,734,812 - -0.2
3,734,812 - +0.1
3,734,821 + +0.3
3,734,821 + -0.2
3,734,822 - -0.3
3,734,822 - +0.4
3,734,822 - -0.1
3,734,878 + +0.4
3,734,878 + -0.9
3,734,878 + -0.3
3,734,878 + -1.4
3,734,878 + +0.3
3,734,878 + -0.3
3,734,878 + -1.2
3,734,878 + -0.3
3,734,878 + -1.2
3,734,878 + -0.1
3,734,879 - -0.2
3,734,879 - +1.1
3,734,879 - +0.8
3,734,879 - +0.0
3,734,879 - -1.3
3,734,879 - -0.0
3,734,885 + -0.8
3,734,885 + -0.6
3,734,886 - +0.8
3,734,886 - +0.1
3,734,915 + +0.3
3,734,916 - -0.2
3,734,942 + +0.8
3,734,942 + +0.3
3,734,942 + -0.1
3,734,942 + -0.1
3,734,942 + +0.8
3,734,942 + +0.6
3,734,942 + -0.4
3,734,943 - +0.1
3,734,943 - -0.5
3,734,943 - -0.3
3,734,943 - -0.6
3,734,943 - +0.5
3,734,943 - +1.2
3,734,943 - -0.8
3,734,943 - +0.4
3,734,943 - -1.0
3,734,949 + -1.2
3,734,950 - +1.2
3,735,204 + OH686_17920 0.22 +0.9
3,735,204 + OH686_17920 0.22 +0.2
3,735,204 + OH686_17920 0.22 -0.8
3,735,204 + OH686_17920 0.22 +0.5
3,735,262 + OH686_17920 0.27 -0.2
3,735,280 + OH686_17920 0.29 -0.5
3,735,280 + OH686_17920 0.29 +1.5
3,735,280 + OH686_17920 0.29 -1.2
3,735,281 - OH686_17920 0.29 +0.1
3,735,304 - OH686_17920 0.31 +0.2
3,735,498 + OH686_17920 0.48 -0.0
3,735,498 + OH686_17920 0.48 +0.3
3,735,498 + OH686_17920 0.48 +0.4
3,735,499 - OH686_17920 0.48 +0.3
3,735,499 - OH686_17920 0.48 +0.5
3,735,499 - OH686_17920 0.48 +0.3

Or see this region's nucleotide sequence