Strain Fitness in Pseudomonas sp. S08-1 around OH686_06840

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06830 and OH686_06835 are separated by 9 nucleotidesOH686_06835 and OH686_06840 are separated by 67 nucleotidesOH686_06840 and OH686_06845 are separated by 131 nucleotides OH686_06830: OH686_06830 - hypothetical protein, at 1,391,308 to 1,392,597 _06830 OH686_06835: OH686_06835 - hypothetical protein, at 1,392,607 to 1,393,158 _06835 OH686_06840: OH686_06840 - Transcriptional regulator, AcrR family, at 1,393,226 to 1,393,939 _06840 OH686_06845: OH686_06845 - lysine--tRNA ligase, at 1,394,071 to 1,395,588 _06845 Position (kb) 1393 1394Strain fitness (log2 ratio) -2 -1 0 1at 1392.287 kb on + strand, within OH686_06830at 1392.419 kb on + strand, within OH686_06830at 1392.419 kb on + strand, within OH686_06830at 1392.419 kb on + strand, within OH686_06830at 1392.419 kb on + strand, within OH686_06830at 1392.420 kb on - strand, within OH686_06830at 1392.420 kb on - strand, within OH686_06830at 1392.420 kb on - strand, within OH686_06830at 1392.420 kb on - strand, within OH686_06830at 1392.420 kb on - strand, within OH686_06830at 1392.420 kb on - strand, within OH686_06830at 1392.420 kb on - strand, within OH686_06830at 1392.420 kb on - strand, within OH686_06830at 1392.422 kb on + strand, within OH686_06830at 1392.422 kb on + strand, within OH686_06830at 1392.422 kb on + strand, within OH686_06830at 1392.423 kb on - strand, within OH686_06830at 1392.423 kb on - strand, within OH686_06830at 1392.569 kb on + strandat 1392.570 kb on - strandat 1392.570 kb on - strandat 1392.570 kb on - strandat 1392.608 kb on + strandat 1392.674 kb on + strand, within OH686_06835at 1392.674 kb on + strand, within OH686_06835at 1392.674 kb on + strand, within OH686_06835at 1392.674 kb on + strand, within OH686_06835at 1392.675 kb on - strand, within OH686_06835at 1392.675 kb on - strand, within OH686_06835at 1392.675 kb on - strand, within OH686_06835at 1392.675 kb on - strand, within OH686_06835at 1392.675 kb on - strand, within OH686_06835at 1392.675 kb on - strand, within OH686_06835at 1392.675 kb on - strand, within OH686_06835at 1392.675 kb on - strand, within OH686_06835at 1392.797 kb on + strand, within OH686_06835at 1392.797 kb on + strand, within OH686_06835at 1392.797 kb on + strand, within OH686_06835at 1392.798 kb on - strand, within OH686_06835at 1392.798 kb on - strand, within OH686_06835at 1392.798 kb on - strand, within OH686_06835at 1392.798 kb on - strand, within OH686_06835at 1392.798 kb on - strand, within OH686_06835at 1392.798 kb on - strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.805 kb on + strand, within OH686_06835at 1392.806 kb on - strand, within OH686_06835at 1392.806 kb on - strand, within OH686_06835at 1392.806 kb on - strand, within OH686_06835at 1392.806 kb on - strand, within OH686_06835at 1392.806 kb on - strand, within OH686_06835at 1392.806 kb on - strand, within OH686_06835at 1392.806 kb on - strand, within OH686_06835at 1392.884 kb on + strand, within OH686_06835at 1392.884 kb on + strand, within OH686_06835at 1392.884 kb on + strand, within OH686_06835at 1392.884 kb on + strand, within OH686_06835at 1392.884 kb on + strand, within OH686_06835at 1392.884 kb on + strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.885 kb on - strand, within OH686_06835at 1392.920 kb on + strand, within OH686_06835at 1393.004 kb on + strand, within OH686_06835at 1393.004 kb on + strand, within OH686_06835at 1393.005 kb on - strand, within OH686_06835at 1393.005 kb on - strand, within OH686_06835at 1393.057 kb on - strand, within OH686_06835at 1393.280 kb on + strandat 1393.280 kb on + strandat 1393.281 kb on - strandat 1393.317 kb on + strand, within OH686_06840at 1393.318 kb on - strand, within OH686_06840at 1393.318 kb on - strand, within OH686_06840at 1393.318 kb on - strand, within OH686_06840at 1393.339 kb on + strand, within OH686_06840at 1393.339 kb on + strand, within OH686_06840at 1393.339 kb on + strand, within OH686_06840at 1393.339 kb on + strand, within OH686_06840at 1393.339 kb on + strand, within OH686_06840at 1393.340 kb on - strand, within OH686_06840at 1393.340 kb on - strand, within OH686_06840at 1393.716 kb on + strand, within OH686_06840at 1393.716 kb on + strand, within OH686_06840at 1393.716 kb on + strand, within OH686_06840at 1393.716 kb on + strand, within OH686_06840at 1393.716 kb on + strand, within OH686_06840at 1393.717 kb on - strand, within OH686_06840at 1393.717 kb on - strand, within OH686_06840at 1393.717 kb on - strand, within OH686_06840at 1393.717 kb on - strand, within OH686_06840at 1393.717 kb on - strand, within OH686_06840at 1393.719 kb on + strand, within OH686_06840at 1393.719 kb on + strand, within OH686_06840at 1393.719 kb on + strand, within OH686_06840at 1393.719 kb on + strand, within OH686_06840at 1393.719 kb on + strand, within OH686_06840at 1393.719 kb on + strand, within OH686_06840at 1393.719 kb on + strand, within OH686_06840at 1393.719 kb on + strand, within OH686_06840at 1393.720 kb on - strand, within OH686_06840at 1393.720 kb on - strand, within OH686_06840at 1393.720 kb on - strand, within OH686_06840at 1393.720 kb on - strand, within OH686_06840at 1393.720 kb on - strand, within OH686_06840at 1393.823 kb on - strand, within OH686_06840at 1393.872 kb on + strandat 1393.872 kb on + strandat 1393.873 kb on - strandat 1393.873 kb on - strandat 1393.873 kb on - strandat 1393.969 kb on + strandat 1393.970 kb on - strandat 1393.995 kb on + strandat 1393.996 kb on - strandat 1393.996 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,392,287 + OH686_06830 0.76 +0.8
1,392,419 + OH686_06830 0.86 +0.0
1,392,419 + OH686_06830 0.86 -0.3
1,392,419 + OH686_06830 0.86 -1.0
1,392,419 + OH686_06830 0.86 +0.2
1,392,420 - OH686_06830 0.86 +0.3
1,392,420 - OH686_06830 0.86 -0.4
1,392,420 - OH686_06830 0.86 -0.2
1,392,420 - OH686_06830 0.86 +0.3
1,392,420 - OH686_06830 0.86 -0.8
1,392,420 - OH686_06830 0.86 -0.2
1,392,420 - OH686_06830 0.86 -0.6
1,392,420 - OH686_06830 0.86 +0.3
1,392,422 + OH686_06830 0.86 -1.1
1,392,422 + OH686_06830 0.86 +0.2
1,392,422 + OH686_06830 0.86 -0.4
1,392,423 - OH686_06830 0.86 -0.6
1,392,423 - OH686_06830 0.86 +0.3
1,392,569 + -0.3
1,392,570 - -0.6
1,392,570 - +0.3
1,392,570 - +0.3
1,392,608 + -0.8
1,392,674 + OH686_06835 0.12 -0.3
1,392,674 + OH686_06835 0.12 -0.2
1,392,674 + OH686_06835 0.12 -0.8
1,392,674 + OH686_06835 0.12 -0.5
1,392,675 - OH686_06835 0.12 -0.3
1,392,675 - OH686_06835 0.12 -0.7
1,392,675 - OH686_06835 0.12 -0.4
1,392,675 - OH686_06835 0.12 +0.3
1,392,675 - OH686_06835 0.12 +0.1
1,392,675 - OH686_06835 0.12 +0.1
1,392,675 - OH686_06835 0.12 +0.9
1,392,675 - OH686_06835 0.12 +1.2
1,392,797 + OH686_06835 0.34 +0.0
1,392,797 + OH686_06835 0.34 +1.0
1,392,797 + OH686_06835 0.34 +0.1
1,392,798 - OH686_06835 0.35 -0.7
1,392,798 - OH686_06835 0.35 -0.1
1,392,798 - OH686_06835 0.35 +0.2
1,392,798 - OH686_06835 0.35 -0.2
1,392,798 - OH686_06835 0.35 -0.2
1,392,798 - OH686_06835 0.35 -0.5
1,392,805 + OH686_06835 0.36 -0.0
1,392,805 + OH686_06835 0.36 +0.5
1,392,805 + OH686_06835 0.36 +0.6
1,392,805 + OH686_06835 0.36 +0.0
1,392,805 + OH686_06835 0.36 +0.2
1,392,805 + OH686_06835 0.36 -0.6
1,392,805 + OH686_06835 0.36 +0.5
1,392,805 + OH686_06835 0.36 -0.9
1,392,805 + OH686_06835 0.36 +1.5
1,392,805 + OH686_06835 0.36 -0.1
1,392,806 - OH686_06835 0.36 -0.6
1,392,806 - OH686_06835 0.36 +1.2
1,392,806 - OH686_06835 0.36 +0.6
1,392,806 - OH686_06835 0.36 +0.0
1,392,806 - OH686_06835 0.36 +0.2
1,392,806 - OH686_06835 0.36 -0.2
1,392,806 - OH686_06835 0.36 -0.8
1,392,884 + OH686_06835 0.50 -0.3
1,392,884 + OH686_06835 0.50 +0.3
1,392,884 + OH686_06835 0.50 -0.8
1,392,884 + OH686_06835 0.50 +0.2
1,392,884 + OH686_06835 0.50 +0.2
1,392,884 + OH686_06835 0.50 -0.3
1,392,885 - OH686_06835 0.50 -0.4
1,392,885 - OH686_06835 0.50 +0.3
1,392,885 - OH686_06835 0.50 +0.7
1,392,885 - OH686_06835 0.50 +0.3
1,392,885 - OH686_06835 0.50 +0.2
1,392,885 - OH686_06835 0.50 -0.2
1,392,885 - OH686_06835 0.50 +1.1
1,392,885 - OH686_06835 0.50 +0.7
1,392,885 - OH686_06835 0.50 +0.0
1,392,885 - OH686_06835 0.50 -0.1
1,392,920 + OH686_06835 0.57 +0.4
1,393,004 + OH686_06835 0.72 +0.0
1,393,004 + OH686_06835 0.72 +0.8
1,393,005 - OH686_06835 0.72 +0.4
1,393,005 - OH686_06835 0.72 +0.0
1,393,057 - OH686_06835 0.82 +0.5
1,393,280 + -0.0
1,393,280 + -0.2
1,393,281 - -0.4
1,393,317 + OH686_06840 0.13 -0.8
1,393,318 - OH686_06840 0.13 -0.7
1,393,318 - OH686_06840 0.13 -0.7
1,393,318 - OH686_06840 0.13 -2.2
1,393,339 + OH686_06840 0.16 +0.1
1,393,339 + OH686_06840 0.16 +0.2
1,393,339 + OH686_06840 0.16 +0.4
1,393,339 + OH686_06840 0.16 +0.3
1,393,339 + OH686_06840 0.16 +0.3
1,393,340 - OH686_06840 0.16 +0.5
1,393,340 - OH686_06840 0.16 +0.9
1,393,716 + OH686_06840 0.69 +0.7
1,393,716 + OH686_06840 0.69 +0.9
1,393,716 + OH686_06840 0.69 -0.4
1,393,716 + OH686_06840 0.69 +0.3
1,393,716 + OH686_06840 0.69 +0.3
1,393,717 - OH686_06840 0.69 +0.2
1,393,717 - OH686_06840 0.69 +0.3
1,393,717 - OH686_06840 0.69 -0.3
1,393,717 - OH686_06840 0.69 +0.3
1,393,717 - OH686_06840 0.69 +0.1
1,393,719 + OH686_06840 0.69 -0.1
1,393,719 + OH686_06840 0.69 +0.8
1,393,719 + OH686_06840 0.69 -0.2
1,393,719 + OH686_06840 0.69 -0.1
1,393,719 + OH686_06840 0.69 +0.2
1,393,719 + OH686_06840 0.69 +0.6
1,393,719 + OH686_06840 0.69 +0.2
1,393,719 + OH686_06840 0.69 -0.1
1,393,720 - OH686_06840 0.69 -0.0
1,393,720 - OH686_06840 0.69 +0.5
1,393,720 - OH686_06840 0.69 -0.8
1,393,720 - OH686_06840 0.69 -0.1
1,393,720 - OH686_06840 0.69 +1.0
1,393,823 - OH686_06840 0.84 -1.2
1,393,872 + -0.9
1,393,872 + +0.6
1,393,873 - -0.7
1,393,873 - +1.4
1,393,873 - -0.7
1,393,969 + -0.6
1,393,970 - +0.2
1,393,995 + -0.1
1,393,996 - -0.5
1,393,996 - -0.1

Or see this region's nucleotide sequence