Strain Fitness in Pseudomonas sp. S08-1 around OH686_04575

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04570 and OH686_04575 are separated by 24 nucleotidesOH686_04575 and OH686_04580 are separated by 29 nucleotides OH686_04570: OH686_04570 - Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system, at 948,498 to 950,048 _04570 OH686_04575: OH686_04575 - hypothetical protein, at 950,073 to 950,966 _04575 OH686_04580: OH686_04580 - excinuclease ABC subunit B, at 950,996 to 953,011 _04580 Position (kb) 950 951Strain fitness (log2 ratio) -2 -1 0 1at 949.122 kb on + strand, within OH686_04570at 949.122 kb on + strand, within OH686_04570at 949.122 kb on + strand, within OH686_04570at 949.122 kb on + strand, within OH686_04570at 949.123 kb on - strand, within OH686_04570at 949.123 kb on - strand, within OH686_04570at 949.175 kb on - strand, within OH686_04570at 949.369 kb on - strand, within OH686_04570at 949.369 kb on - strand, within OH686_04570at 949.380 kb on + strand, within OH686_04570at 949.380 kb on + strand, within OH686_04570at 949.380 kb on + strand, within OH686_04570at 949.380 kb on + strand, within OH686_04570at 949.380 kb on + strand, within OH686_04570at 949.381 kb on - strand, within OH686_04570at 949.381 kb on - strand, within OH686_04570at 949.416 kb on + strand, within OH686_04570at 949.417 kb on - strand, within OH686_04570at 949.417 kb on - strand, within OH686_04570at 949.417 kb on - strand, within OH686_04570at 949.417 kb on - strand, within OH686_04570at 949.610 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.677 kb on + strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.678 kb on - strand, within OH686_04570at 949.679 kb on + strand, within OH686_04570at 949.679 kb on + strand, within OH686_04570at 949.794 kb on + strand, within OH686_04570at 949.794 kb on + strand, within OH686_04570at 949.795 kb on - strand, within OH686_04570at 949.803 kb on + strand, within OH686_04570at 949.803 kb on + strand, within OH686_04570at 949.822 kb on + strand, within OH686_04570at 949.823 kb on - strand, within OH686_04570at 949.823 kb on - strand, within OH686_04570at 949.941 kb on + strandat 949.941 kb on + strandat 949.941 kb on + strandat 949.941 kb on + strandat 949.942 kb on - strandat 949.942 kb on - strandat 949.942 kb on - strandat 949.942 kb on - strandat 949.942 kb on - strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.127 kb on + strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.128 kb on - strandat 950.148 kb on + strandat 950.148 kb on + strandat 950.149 kb on - strandat 950.149 kb on - strandat 950.149 kb on - strandat 950.149 kb on - strandat 950.149 kb on - strandat 950.149 kb on - strandat 950.266 kb on + strand, within OH686_04575at 950.340 kb on + strand, within OH686_04575at 950.340 kb on + strand, within OH686_04575at 950.340 kb on + strand, within OH686_04575at 950.340 kb on + strand, within OH686_04575at 950.340 kb on + strand, within OH686_04575at 950.341 kb on - strand, within OH686_04575at 950.341 kb on - strand, within OH686_04575at 950.382 kb on + strand, within OH686_04575at 950.382 kb on + strand, within OH686_04575at 950.382 kb on + strand, within OH686_04575at 950.382 kb on + strand, within OH686_04575at 950.382 kb on + strand, within OH686_04575at 950.382 kb on + strand, within OH686_04575at 950.382 kb on + strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.383 kb on - strand, within OH686_04575at 950.749 kb on - strand, within OH686_04575at 950.749 kb on - strand, within OH686_04575at 950.778 kb on + strand, within OH686_04575at 950.787 kb on + strand, within OH686_04575at 950.787 kb on + strand, within OH686_04575at 950.788 kb on - strand, within OH686_04575at 950.788 kb on - strand, within OH686_04575at 951.084 kb on + strandat 951.084 kb on + strandat 951.084 kb on + strandat 951.084 kb on + strandat 951.084 kb on + strandat 951.084 kb on + strandat 951.084 kb on + strandat 951.084 kb on + strandat 951.085 kb on - strandat 951.085 kb on - strandat 951.085 kb on - strandat 951.085 kb on - strandat 951.085 kb on - strandat 951.085 kb on - strandat 951.085 kb on - strandat 951.268 kb on + strand, within OH686_04580at 951.360 kb on + strand, within OH686_04580at 951.360 kb on + strand, within OH686_04580at 951.361 kb on - strand, within OH686_04580at 951.361 kb on - strand, within OH686_04580at 951.361 kb on - strand, within OH686_04580at 951.361 kb on - strand, within OH686_04580at 951.594 kb on + strand, within OH686_04580at 951.594 kb on + strand, within OH686_04580at 951.595 kb on - strand, within OH686_04580at 951.595 kb on - strand, within OH686_04580at 951.595 kb on - strand, within OH686_04580at 951.624 kb on + strand, within OH686_04580at 951.624 kb on + strand, within OH686_04580at 951.625 kb on - strand, within OH686_04580at 951.625 kb on - strand, within OH686_04580at 951.625 kb on - strand, within OH686_04580at 951.819 kb on + strand, within OH686_04580at 951.819 kb on + strand, within OH686_04580at 951.819 kb on + strand, within OH686_04580at 951.819 kb on + strand, within OH686_04580at 951.819 kb on + strand, within OH686_04580at 951.820 kb on - strand, within OH686_04580at 951.820 kb on - strand, within OH686_04580at 951.820 kb on - strand, within OH686_04580at 951.820 kb on - strand, within OH686_04580at 951.820 kb on - strand, within OH686_04580at 951.820 kb on - strand, within OH686_04580at 951.820 kb on - strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.963 kb on + strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580at 951.964 kb on - strand, within OH686_04580

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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949,122 + OH686_04570 0.40 -0.0
949,122 + OH686_04570 0.40 -0.5
949,122 + OH686_04570 0.40 +0.0
949,122 + OH686_04570 0.40 +0.2
949,123 - OH686_04570 0.40 +0.1
949,123 - OH686_04570 0.40 +0.5
949,175 - OH686_04570 0.44 +0.7
949,369 - OH686_04570 0.56 +0.0
949,369 - OH686_04570 0.56 +0.2
949,380 + OH686_04570 0.57 +0.0
949,380 + OH686_04570 0.57 -0.9
949,380 + OH686_04570 0.57 -0.5
949,380 + OH686_04570 0.57 +0.3
949,380 + OH686_04570 0.57 -1.3
949,381 - OH686_04570 0.57 -1.2
949,381 - OH686_04570 0.57 +0.1
949,416 + OH686_04570 0.59 +0.5
949,417 - OH686_04570 0.59 +0.8
949,417 - OH686_04570 0.59 -0.0
949,417 - OH686_04570 0.59 -0.2
949,417 - OH686_04570 0.59 +0.4
949,610 + OH686_04570 0.72 -0.1
949,677 + OH686_04570 0.76 +0.3
949,677 + OH686_04570 0.76 +1.0
949,677 + OH686_04570 0.76 -0.6
949,677 + OH686_04570 0.76 -0.1
949,677 + OH686_04570 0.76 +0.1
949,677 + OH686_04570 0.76 +0.5
949,677 + OH686_04570 0.76 +0.1
949,677 + OH686_04570 0.76 -0.3
949,677 + OH686_04570 0.76 -0.6
949,677 + OH686_04570 0.76 -0.1
949,677 + OH686_04570 0.76 -1.0
949,677 + OH686_04570 0.76 -0.2
949,677 + OH686_04570 0.76 -0.2
949,677 + OH686_04570 0.76 +0.9
949,677 + OH686_04570 0.76 +0.6
949,677 + OH686_04570 0.76 +0.6
949,677 + OH686_04570 0.76 -0.2
949,678 - OH686_04570 0.76 -0.1
949,678 - OH686_04570 0.76 -0.9
949,678 - OH686_04570 0.76 +0.2
949,678 - OH686_04570 0.76 +0.0
949,678 - OH686_04570 0.76 +0.4
949,678 - OH686_04570 0.76 -0.6
949,678 - OH686_04570 0.76 -0.2
949,678 - OH686_04570 0.76 -0.9
949,678 - OH686_04570 0.76 -0.1
949,678 - OH686_04570 0.76 -0.3
949,678 - OH686_04570 0.76 -0.0
949,678 - OH686_04570 0.76 +0.6
949,678 - OH686_04570 0.76 +0.7
949,679 + OH686_04570 0.76 +0.5
949,679 + OH686_04570 0.76 +0.1
949,794 + OH686_04570 0.84 +0.1
949,794 + OH686_04570 0.84 +0.2
949,795 - OH686_04570 0.84 -0.6
949,803 + OH686_04570 0.84 +0.6
949,803 + OH686_04570 0.84 +0.3
949,822 + OH686_04570 0.85 +1.2
949,823 - OH686_04570 0.85 -2.0
949,823 - OH686_04570 0.85 -0.2
949,941 + -0.2
949,941 + -0.1
949,941 + -0.2
949,941 + +0.1
949,942 - -0.3
949,942 - -1.2
949,942 - +0.5
949,942 - -0.1
949,942 - -0.1
950,127 + -0.0
950,127 + +0.0
950,127 + -0.8
950,127 + +0.1
950,127 + -0.5
950,127 + -0.5
950,127 + +0.5
950,127 + -0.1
950,127 + +1.1
950,127 + -0.9
950,127 + +0.5
950,127 + -0.7
950,127 + -1.0
950,127 + +0.0
950,127 + -0.3
950,127 + +0.3
950,127 + +0.0
950,127 + -0.4
950,127 + +0.7
950,127 + +0.3
950,127 + -0.1
950,127 + +0.7
950,127 + +0.8
950,127 + -1.0
950,128 - -0.6
950,128 - -0.3
950,128 - -0.8
950,128 - +0.4
950,128 - +1.3
950,128 - -0.9
950,128 - +0.1
950,128 - -0.0
950,128 - +0.5
950,128 - +0.8
950,128 - +0.0
950,128 - -0.6
950,128 - -0.2
950,128 - +0.5
950,128 - -0.1
950,128 - +1.1
950,128 - +0.9
950,148 + -0.4
950,148 + +0.9
950,149 - +0.3
950,149 - +0.3
950,149 - +0.1
950,149 - -1.4
950,149 - -0.3
950,149 - +1.4
950,266 + OH686_04575 0.22 -0.5
950,340 + OH686_04575 0.30 +0.7
950,340 + OH686_04575 0.30 -0.3
950,340 + OH686_04575 0.30 +0.1
950,340 + OH686_04575 0.30 +0.1
950,340 + OH686_04575 0.30 -0.6
950,341 - OH686_04575 0.30 +1.0
950,341 - OH686_04575 0.30 +0.4
950,382 + OH686_04575 0.35 -1.0
950,382 + OH686_04575 0.35 +0.3
950,382 + OH686_04575 0.35 -0.8
950,382 + OH686_04575 0.35 -2.1
950,382 + OH686_04575 0.35 -0.6
950,382 + OH686_04575 0.35 +1.6
950,382 + OH686_04575 0.35 +0.7
950,383 - OH686_04575 0.35 +0.9
950,383 - OH686_04575 0.35 +0.2
950,383 - OH686_04575 0.35 -0.6
950,383 - OH686_04575 0.35 +0.4
950,383 - OH686_04575 0.35 -0.5
950,383 - OH686_04575 0.35 +0.1
950,383 - OH686_04575 0.35 -0.0
950,383 - OH686_04575 0.35 -0.4
950,383 - OH686_04575 0.35 -0.6
950,383 - OH686_04575 0.35 +1.5
950,383 - OH686_04575 0.35 -0.2
950,749 - OH686_04575 0.76 -0.7
950,749 - OH686_04575 0.76 -0.1
950,778 + OH686_04575 0.79 +0.4
950,787 + OH686_04575 0.80 +0.1
950,787 + OH686_04575 0.80 -0.4
950,788 - OH686_04575 0.80 -0.5
950,788 - OH686_04575 0.80 -0.1
951,084 + +0.5
951,084 + -2.1
951,084 + -1.0
951,084 + +0.7
951,084 + -0.2
951,084 + -0.7
951,084 + -0.6
951,084 + -0.3
951,085 - +0.7
951,085 - -0.0
951,085 - -1.0
951,085 - +0.2
951,085 - -1.2
951,085 - -0.7
951,085 - +1.0
951,268 + OH686_04580 0.13 +0.3
951,360 + OH686_04580 0.18 +0.5
951,360 + OH686_04580 0.18 -0.3
951,361 - OH686_04580 0.18 +0.7
951,361 - OH686_04580 0.18 +0.1
951,361 - OH686_04580 0.18 -0.6
951,361 - OH686_04580 0.18 -0.7
951,594 + OH686_04580 0.30 -0.7
951,594 + OH686_04580 0.30 -0.1
951,595 - OH686_04580 0.30 +0.6
951,595 - OH686_04580 0.30 -0.2
951,595 - OH686_04580 0.30 -0.8
951,624 + OH686_04580 0.31 +0.1
951,624 + OH686_04580 0.31 -0.7
951,625 - OH686_04580 0.31 -0.6
951,625 - OH686_04580 0.31 +0.8
951,625 - OH686_04580 0.31 -0.2
951,819 + OH686_04580 0.41 -0.4
951,819 + OH686_04580 0.41 +0.1
951,819 + OH686_04580 0.41 -0.6
951,819 + OH686_04580 0.41 +0.7
951,819 + OH686_04580 0.41 -0.1
951,820 - OH686_04580 0.41 +0.3
951,820 - OH686_04580 0.41 +0.1
951,820 - OH686_04580 0.41 -0.1
951,820 - OH686_04580 0.41 -0.1
951,820 - OH686_04580 0.41 -0.1
951,820 - OH686_04580 0.41 -0.1
951,820 - OH686_04580 0.41 -0.3
951,963 + OH686_04580 0.48 +0.1
951,963 + OH686_04580 0.48 -0.3
951,963 + OH686_04580 0.48 -1.9
951,963 + OH686_04580 0.48 -0.0
951,963 + OH686_04580 0.48 -0.1
951,963 + OH686_04580 0.48 +0.9
951,963 + OH686_04580 0.48 -0.3
951,963 + OH686_04580 0.48 -1.6
951,963 + OH686_04580 0.48 +0.5
951,963 + OH686_04580 0.48 -0.6
951,963 + OH686_04580 0.48 -0.5
951,964 - OH686_04580 0.48 -0.1
951,964 - OH686_04580 0.48 -0.6
951,964 - OH686_04580 0.48 -0.6
951,964 - OH686_04580 0.48 +0.2
951,964 - OH686_04580 0.48 +1.4
951,964 - OH686_04580 0.48 -0.2
951,964 - OH686_04580 0.48 +0.2
951,964 - OH686_04580 0.48 +0.1
951,964 - OH686_04580 0.48 -0.1
951,964 - OH686_04580 0.48 -1.1
951,964 - OH686_04580 0.48 +0.1
951,964 - OH686_04580 0.48 +0.2
951,964 - OH686_04580 0.48 -1.0
951,964 - OH686_04580 0.48 -0.6

Or see this region's nucleotide sequence