Strain Fitness in Pseudomonas sp. S08-1 around OH686_03630

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03625 and OH686_03630 are separated by 176 nucleotidesOH686_03630 and OH686_03635 are separated by 136 nucleotides OH686_03625: OH686_03625 - Peptidyl-prolyl cis-trans isomerase PpiD , at 749,570 to 751,426 _03625 OH686_03630: OH686_03630 - DNA-binding protein HU-beta, at 751,603 to 751,875 _03630 OH686_03635: OH686_03635 - endopeptidase La, at 752,012 to 754,408 _03635 Position (kb) 751 752Strain fitness (log2 ratio) -2 -1 0 1 2at 750.666 kb on + strand, within OH686_03625at 750.666 kb on + strand, within OH686_03625at 750.666 kb on + strand, within OH686_03625at 750.666 kb on + strand, within OH686_03625at 750.667 kb on - strand, within OH686_03625at 750.667 kb on - strand, within OH686_03625at 750.667 kb on - strand, within OH686_03625at 750.667 kb on - strand, within OH686_03625at 750.667 kb on - strand, within OH686_03625at 750.735 kb on + strand, within OH686_03625at 750.736 kb on - strand, within OH686_03625at 750.736 kb on - strand, within OH686_03625at 750.736 kb on - strand, within OH686_03625at 750.786 kb on + strand, within OH686_03625at 750.786 kb on + strand, within OH686_03625at 750.786 kb on + strand, within OH686_03625at 750.786 kb on + strand, within OH686_03625at 750.786 kb on + strand, within OH686_03625at 750.786 kb on + strand, within OH686_03625at 750.786 kb on + strand, within OH686_03625at 750.787 kb on - strand, within OH686_03625at 750.787 kb on - strand, within OH686_03625at 750.789 kb on + strand, within OH686_03625at 750.789 kb on + strand, within OH686_03625at 750.789 kb on + strand, within OH686_03625at 750.790 kb on - strand, within OH686_03625at 750.790 kb on - strand, within OH686_03625at 750.953 kb on + strand, within OH686_03625at 750.953 kb on + strand, within OH686_03625at 750.953 kb on + strand, within OH686_03625at 750.953 kb on + strand, within OH686_03625at 750.953 kb on + strand, within OH686_03625at 750.954 kb on - strand, within OH686_03625at 750.954 kb on - strand, within OH686_03625at 751.091 kb on - strand, within OH686_03625at 751.138 kb on + strand, within OH686_03625at 751.139 kb on - strand, within OH686_03625at 751.523 kb on + strandat 751.524 kb on - strandat 751.911 kb on - strandat 751.911 kb on - strandat 751.924 kb on - strandat 751.924 kb on - strandat 751.960 kb on - strandat 751.960 kb on - strandat 751.960 kb on - strandat 751.960 kb on - strandat 751.972 kb on - strandat 751.972 kb on - strandat 751.974 kb on - strandat 751.974 kb on - strandat 751.991 kb on - strandat 752.054 kb on - strandat 752.143 kb on + strandat 752.152 kb on + strandat 752.173 kb on + strandat 752.174 kb on - strandat 752.174 kb on - strandat 752.174 kb on - strandat 752.256 kb on - strand, within OH686_03635at 752.721 kb on - strand, within OH686_03635at 752.721 kb on - strand, within OH686_03635at 752.721 kb on - strand, within OH686_03635at 752.817 kb on + strand, within OH686_03635at 752.817 kb on + strand, within OH686_03635at 752.817 kb on + strand, within OH686_03635at 752.817 kb on + strand, within OH686_03635at 752.818 kb on - strand, within OH686_03635at 752.818 kb on - strand, within OH686_03635at 752.818 kb on - strand, within OH686_03635at 752.820 kb on + strand, within OH686_03635at 752.821 kb on - strand, within OH686_03635

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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750,666 + OH686_03625 0.59 -0.2
750,666 + OH686_03625 0.59 -0.2
750,666 + OH686_03625 0.59 -0.6
750,666 + OH686_03625 0.59 -0.6
750,667 - OH686_03625 0.59 -1.0
750,667 - OH686_03625 0.59 +0.6
750,667 - OH686_03625 0.59 -0.8
750,667 - OH686_03625 0.59 -1.0
750,667 - OH686_03625 0.59 +1.8
750,735 + OH686_03625 0.63 +0.4
750,736 - OH686_03625 0.63 +0.8
750,736 - OH686_03625 0.63 +0.4
750,736 - OH686_03625 0.63 -1.4
750,786 + OH686_03625 0.65 -1.4
750,786 + OH686_03625 0.65 -1.7
750,786 + OH686_03625 0.65 -0.6
750,786 + OH686_03625 0.65 -2.2
750,786 + OH686_03625 0.65 -0.8
750,786 + OH686_03625 0.65 +1.0
750,786 + OH686_03625 0.65 +0.2
750,787 - OH686_03625 0.66 -2.3
750,787 - OH686_03625 0.66 -2.3
750,789 + OH686_03625 0.66 +0.4
750,789 + OH686_03625 0.66 +0.4
750,789 + OH686_03625 0.66 -1.7
750,790 - OH686_03625 0.66 +0.8
750,790 - OH686_03625 0.66 -1.0
750,953 + OH686_03625 0.74 +1.2
750,953 + OH686_03625 0.74 +0.4
750,953 + OH686_03625 0.74 +0.3
750,953 + OH686_03625 0.74 -1.4
750,953 + OH686_03625 0.74 -1.2
750,954 - OH686_03625 0.75 +0.0
750,954 - OH686_03625 0.75 -0.3
751,091 - OH686_03625 0.82 +0.2
751,138 + OH686_03625 0.84 -0.6
751,139 - OH686_03625 0.84 -0.0
751,523 + -0.6
751,524 - -0.4
751,911 - -1.9
751,911 - -0.6
751,924 - +1.6
751,924 - +0.7
751,960 - +0.6
751,960 - -0.2
751,960 - -0.7
751,960 - +0.9
751,972 - +1.7
751,972 - -0.3
751,974 - +0.5
751,974 - -0.6
751,991 - -2.2
752,054 - -0.8
752,143 + -2.7
752,152 + -0.0
752,173 + -0.8
752,174 - +0.1
752,174 - -0.7
752,174 - +0.4
752,256 - OH686_03635 0.10 +0.2
752,721 - OH686_03635 0.30 -0.6
752,721 - OH686_03635 0.30 -1.4
752,721 - OH686_03635 0.30 -0.0
752,817 + OH686_03635 0.34 -1.0
752,817 + OH686_03635 0.34 -0.9
752,817 + OH686_03635 0.34 -0.2
752,817 + OH686_03635 0.34 -0.1
752,818 - OH686_03635 0.34 -1.2
752,818 - OH686_03635 0.34 -0.2
752,818 - OH686_03635 0.34 -0.2
752,820 + OH686_03635 0.34 -1.8
752,821 - OH686_03635 0.34 +0.4

Or see this region's nucleotide sequence