Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23905

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS23900 and ABIE41_RS23905 are separated by 194 nucleotidesABIE41_RS23905 and ABIE41_RS23910 overlap by 4 nucleotides ABIE41_RS23900: ABIE41_RS23900 - transaldolase, at 4,934,418 to 4,935,374 _RS23900 ABIE41_RS23905: ABIE41_RS23905 - ABC transporter substrate-binding protein, at 4,935,569 to 4,936,570 _RS23905 ABIE41_RS23910: ABIE41_RS23910 - iron ABC transporter permease, at 4,936,567 to 4,938,312 _RS23910 Position (kb) 4935 4936 4937Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4934.731 kb on + strand, within ABIE41_RS23900at 4934.731 kb on + strand, within ABIE41_RS23900at 4934.732 kb on - strand, within ABIE41_RS23900at 4934.732 kb on - strand, within ABIE41_RS23900at 4934.732 kb on - strand, within ABIE41_RS23900at 4934.740 kb on + strand, within ABIE41_RS23900at 4934.740 kb on + strand, within ABIE41_RS23900at 4934.740 kb on + strand, within ABIE41_RS23900at 4934.740 kb on + strand, within ABIE41_RS23900at 4934.741 kb on - strand, within ABIE41_RS23900at 4934.741 kb on - strand, within ABIE41_RS23900at 4934.741 kb on - strand, within ABIE41_RS23900at 4934.741 kb on - strand, within ABIE41_RS23900at 4934.741 kb on - strand, within ABIE41_RS23900at 4934.741 kb on - strand, within ABIE41_RS23900at 4934.741 kb on - strand, within ABIE41_RS23900at 4934.741 kb on - strand, within ABIE41_RS23900at 4934.743 kb on + strand, within ABIE41_RS23900at 4934.743 kb on + strand, within ABIE41_RS23900at 4934.743 kb on + strand, within ABIE41_RS23900at 4934.744 kb on - strand, within ABIE41_RS23900at 4934.744 kb on - strand, within ABIE41_RS23900at 4934.744 kb on - strand, within ABIE41_RS23900at 4934.744 kb on - strand, within ABIE41_RS23900at 4934.748 kb on + strand, within ABIE41_RS23900at 4934.749 kb on + strand, within ABIE41_RS23900at 4934.749 kb on + strand, within ABIE41_RS23900at 4934.749 kb on + strand, within ABIE41_RS23900at 4934.750 kb on - strand, within ABIE41_RS23900at 4934.750 kb on - strand, within ABIE41_RS23900at 4934.794 kb on + strand, within ABIE41_RS23900at 4934.794 kb on + strand, within ABIE41_RS23900at 4934.794 kb on + strand, within ABIE41_RS23900at 4934.795 kb on - strand, within ABIE41_RS23900at 4934.795 kb on - strand, within ABIE41_RS23900at 4935.017 kb on + strand, within ABIE41_RS23900at 4935.017 kb on + strand, within ABIE41_RS23900at 4935.017 kb on + strand, within ABIE41_RS23900at 4935.017 kb on + strand, within ABIE41_RS23900at 4935.017 kb on + strand, within ABIE41_RS23900at 4935.018 kb on - strand, within ABIE41_RS23900at 4935.018 kb on - strand, within ABIE41_RS23900at 4935.019 kb on + strand, within ABIE41_RS23900at 4935.019 kb on + strand, within ABIE41_RS23900at 4935.019 kb on + strand, within ABIE41_RS23900at 4935.020 kb on - strand, within ABIE41_RS23900at 4935.393 kb on + strandat 4935.503 kb on - strandat 4935.504 kb on + strandat 4935.504 kb on + strandat 4935.504 kb on + strandat 4935.505 kb on - strandat 4935.505 kb on - strandat 4935.505 kb on - strandat 4935.505 kb on - strandat 4935.511 kb on + strandat 4935.512 kb on - strandat 4935.512 kb on - strandat 4935.512 kb on - strandat 4935.522 kb on + strandat 4935.680 kb on + strand, within ABIE41_RS23905at 4935.680 kb on + strand, within ABIE41_RS23905at 4935.680 kb on + strand, within ABIE41_RS23905at 4935.681 kb on - strand, within ABIE41_RS23905at 4935.681 kb on - strand, within ABIE41_RS23905at 4935.817 kb on + strand, within ABIE41_RS23905at 4935.921 kb on - strand, within ABIE41_RS23905at 4935.989 kb on + strand, within ABIE41_RS23905at 4935.989 kb on + strand, within ABIE41_RS23905at 4935.989 kb on + strand, within ABIE41_RS23905at 4935.989 kb on + strand, within ABIE41_RS23905at 4935.989 kb on + strand, within ABIE41_RS23905at 4935.989 kb on + strand, within ABIE41_RS23905at 4935.990 kb on - strand, within ABIE41_RS23905at 4935.990 kb on - strand, within ABIE41_RS23905at 4936.145 kb on + strand, within ABIE41_RS23905at 4936.146 kb on - strand, within ABIE41_RS23905at 4936.146 kb on - strand, within ABIE41_RS23905at 4936.430 kb on + strand, within ABIE41_RS23905at 4936.430 kb on + strand, within ABIE41_RS23905at 4936.430 kb on + strand, within ABIE41_RS23905at 4936.431 kb on - strand, within ABIE41_RS23905at 4936.431 kb on - strand, within ABIE41_RS23905at 4937.100 kb on + strand, within ABIE41_RS23910at 4937.299 kb on + strand, within ABIE41_RS23910at 4937.300 kb on - strand, within ABIE41_RS23910at 4937.300 kb on - strand, within ABIE41_RS23910at 4937.323 kb on + strand, within ABIE41_RS23910

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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4,934,731 + ABIE41_RS23900 0.33 +0.2
4,934,731 + ABIE41_RS23900 0.33 +0.6
4,934,732 - ABIE41_RS23900 0.33 +0.6
4,934,732 - ABIE41_RS23900 0.33 +0.2
4,934,732 - ABIE41_RS23900 0.33 -0.7
4,934,740 + ABIE41_RS23900 0.34 +2.3
4,934,740 + ABIE41_RS23900 0.34 -0.0
4,934,740 + ABIE41_RS23900 0.34 -1.3
4,934,740 + ABIE41_RS23900 0.34 +0.3
4,934,741 - ABIE41_RS23900 0.34 +0.9
4,934,741 - ABIE41_RS23900 0.34 +0.1
4,934,741 - ABIE41_RS23900 0.34 -0.0
4,934,741 - ABIE41_RS23900 0.34 +0.8
4,934,741 - ABIE41_RS23900 0.34 +0.2
4,934,741 - ABIE41_RS23900 0.34 +1.5
4,934,741 - ABIE41_RS23900 0.34 +0.6
4,934,741 - ABIE41_RS23900 0.34 +0.9
4,934,743 + ABIE41_RS23900 0.34 +0.4
4,934,743 + ABIE41_RS23900 0.34 +0.5
4,934,743 + ABIE41_RS23900 0.34 +1.8
4,934,744 - ABIE41_RS23900 0.34 +0.4
4,934,744 - ABIE41_RS23900 0.34 +1.4
4,934,744 - ABIE41_RS23900 0.34 +0.7
4,934,744 - ABIE41_RS23900 0.34 -0.3
4,934,748 + ABIE41_RS23900 0.34 +0.3
4,934,749 + ABIE41_RS23900 0.35 +0.9
4,934,749 + ABIE41_RS23900 0.35 +2.0
4,934,749 + ABIE41_RS23900 0.35 +1.3
4,934,750 - ABIE41_RS23900 0.35 +2.0
4,934,750 - ABIE41_RS23900 0.35 +1.0
4,934,794 + ABIE41_RS23900 0.39 +1.4
4,934,794 + ABIE41_RS23900 0.39 +0.4
4,934,794 + ABIE41_RS23900 0.39 +1.0
4,934,795 - ABIE41_RS23900 0.39 +0.4
4,934,795 - ABIE41_RS23900 0.39 -1.0
4,935,017 + ABIE41_RS23900 0.63 -0.6
4,935,017 + ABIE41_RS23900 0.63 -1.0
4,935,017 + ABIE41_RS23900 0.63 +0.7
4,935,017 + ABIE41_RS23900 0.63 +1.4
4,935,017 + ABIE41_RS23900 0.63 -1.5
4,935,018 - ABIE41_RS23900 0.63 +2.3
4,935,018 - ABIE41_RS23900 0.63 -2.5
4,935,019 + ABIE41_RS23900 0.63 -1.5
4,935,019 + ABIE41_RS23900 0.63 +0.6
4,935,019 + ABIE41_RS23900 0.63 -0.0
4,935,020 - ABIE41_RS23900 0.63 +2.0
4,935,393 + +0.9
4,935,503 - -1.0
4,935,504 + -1.2
4,935,504 + +2.2
4,935,504 + -1.8
4,935,505 - +0.5
4,935,505 - +0.8
4,935,505 - -1.0
4,935,505 - -2.7
4,935,511 + -0.0
4,935,512 - +0.4
4,935,512 - -0.3
4,935,512 - -1.3
4,935,522 + +1.5
4,935,680 + ABIE41_RS23905 0.11 +0.4
4,935,680 + ABIE41_RS23905 0.11 +0.1
4,935,680 + ABIE41_RS23905 0.11 -2.9
4,935,681 - ABIE41_RS23905 0.11 +1.0
4,935,681 - ABIE41_RS23905 0.11 +0.9
4,935,817 + ABIE41_RS23905 0.25 +0.7
4,935,921 - ABIE41_RS23905 0.35 +0.5
4,935,989 + ABIE41_RS23905 0.42 -1.5
4,935,989 + ABIE41_RS23905 0.42 -0.3
4,935,989 + ABIE41_RS23905 0.42 +0.2
4,935,989 + ABIE41_RS23905 0.42 +2.6
4,935,989 + ABIE41_RS23905 0.42 +1.2
4,935,989 + ABIE41_RS23905 0.42 -0.0
4,935,990 - ABIE41_RS23905 0.42 -1.7
4,935,990 - ABIE41_RS23905 0.42 -0.1
4,936,145 + ABIE41_RS23905 0.57 -1.5
4,936,146 - ABIE41_RS23905 0.58 -1.0
4,936,146 - ABIE41_RS23905 0.58 -2.5
4,936,430 + ABIE41_RS23905 0.86 -1.0
4,936,430 + ABIE41_RS23905 0.86 +1.0
4,936,430 + ABIE41_RS23905 0.86 +0.1
4,936,431 - ABIE41_RS23905 0.86 +0.3
4,936,431 - ABIE41_RS23905 0.86 -0.2
4,937,100 + ABIE41_RS23910 0.31 -2.7
4,937,299 + ABIE41_RS23910 0.42 +0.4
4,937,300 - ABIE41_RS23910 0.42 -0.9
4,937,300 - ABIE41_RS23910 0.42 +0.0
4,937,323 + ABIE41_RS23910 0.43 -1.2

Or see this region's nucleotide sequence