Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20940

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20935 and ABIE41_RS20940 are separated by 9 nucleotidesABIE41_RS20940 and ABIE41_RS20945 are separated by 9 nucleotides ABIE41_RS20935: ABIE41_RS20935 - esterase, at 4,307,139 to 4,308,173 _RS20935 ABIE41_RS20940: ABIE41_RS20940 - glutathione-disulfide reductase, at 4,308,183 to 4,309,550 _RS20940 ABIE41_RS20945: ABIE41_RS20945 - O-antigen ligase family protein, at 4,309,560 to 4,310,828 _RS20945 Position (kb) 4308 4309 4310Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4307.340 kb on + strand, within ABIE41_RS20935at 4307.340 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.358 kb on + strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.359 kb on - strand, within ABIE41_RS20935at 4307.367 kb on + strand, within ABIE41_RS20935at 4307.443 kb on - strand, within ABIE41_RS20935at 4307.508 kb on + strand, within ABIE41_RS20935at 4307.509 kb on - strand, within ABIE41_RS20935at 4307.554 kb on - strand, within ABIE41_RS20935at 4307.554 kb on - strand, within ABIE41_RS20935at 4307.554 kb on - strand, within ABIE41_RS20935at 4307.640 kb on + strand, within ABIE41_RS20935at 4307.641 kb on - strand, within ABIE41_RS20935at 4307.641 kb on - strand, within ABIE41_RS20935at 4307.641 kb on - strand, within ABIE41_RS20935at 4307.700 kb on + strand, within ABIE41_RS20935at 4307.701 kb on - strand, within ABIE41_RS20935at 4307.766 kb on + strand, within ABIE41_RS20935at 4307.767 kb on - strand, within ABIE41_RS20935at 4307.767 kb on - strand, within ABIE41_RS20935at 4307.767 kb on - strand, within ABIE41_RS20935at 4307.769 kb on - strand, within ABIE41_RS20935at 4307.769 kb on - strand, within ABIE41_RS20935at 4307.843 kb on - strand, within ABIE41_RS20935at 4307.952 kb on + strand, within ABIE41_RS20935at 4307.953 kb on - strand, within ABIE41_RS20935at 4307.953 kb on - strand, within ABIE41_RS20935at 4307.961 kb on + strand, within ABIE41_RS20935at 4307.961 kb on + strand, within ABIE41_RS20935at 4307.962 kb on - strand, within ABIE41_RS20935at 4308.382 kb on + strand, within ABIE41_RS20940at 4308.382 kb on + strand, within ABIE41_RS20940at 4308.383 kb on - strand, within ABIE41_RS20940at 4308.383 kb on - strand, within ABIE41_RS20940at 4308.383 kb on - strand, within ABIE41_RS20940at 4308.383 kb on - strand, within ABIE41_RS20940at 4308.383 kb on - strand, within ABIE41_RS20940at 4308.629 kb on + strand, within ABIE41_RS20940at 4308.629 kb on + strand, within ABIE41_RS20940at 4308.630 kb on - strand, within ABIE41_RS20940at 4309.100 kb on + strand, within ABIE41_RS20940at 4309.100 kb on + strand, within ABIE41_RS20940at 4309.101 kb on - strand, within ABIE41_RS20940at 4309.256 kb on - strand, within ABIE41_RS20940at 4309.256 kb on - strand, within ABIE41_RS20940at 4309.384 kb on + strand, within ABIE41_RS20940at 4309.385 kb on - strand, within ABIE41_RS20940at 4309.385 kb on - strand, within ABIE41_RS20940at 4309.562 kb on - strandat 4309.562 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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4,307,340 + ABIE41_RS20935 0.19 +0.4
4,307,340 + ABIE41_RS20935 0.19 +1.1
4,307,358 + ABIE41_RS20935 0.21 -1.2
4,307,358 + ABIE41_RS20935 0.21 -1.0
4,307,358 + ABIE41_RS20935 0.21 +0.1
4,307,358 + ABIE41_RS20935 0.21 +0.2
4,307,358 + ABIE41_RS20935 0.21 -0.8
4,307,358 + ABIE41_RS20935 0.21 +0.7
4,307,358 + ABIE41_RS20935 0.21 -0.2
4,307,358 + ABIE41_RS20935 0.21 +1.1
4,307,358 + ABIE41_RS20935 0.21 -1.5
4,307,358 + ABIE41_RS20935 0.21 -0.8
4,307,358 + ABIE41_RS20935 0.21 +1.3
4,307,358 + ABIE41_RS20935 0.21 -0.1
4,307,358 + ABIE41_RS20935 0.21 -0.9
4,307,359 - ABIE41_RS20935 0.21 -0.7
4,307,359 - ABIE41_RS20935 0.21 -0.6
4,307,359 - ABIE41_RS20935 0.21 -0.8
4,307,359 - ABIE41_RS20935 0.21 +0.5
4,307,359 - ABIE41_RS20935 0.21 +0.5
4,307,359 - ABIE41_RS20935 0.21 -0.3
4,307,359 - ABIE41_RS20935 0.21 -3.1
4,307,359 - ABIE41_RS20935 0.21 -0.3
4,307,359 - ABIE41_RS20935 0.21 +2.5
4,307,359 - ABIE41_RS20935 0.21 -1.0
4,307,359 - ABIE41_RS20935 0.21 +1.4
4,307,359 - ABIE41_RS20935 0.21 +0.4
4,307,367 + ABIE41_RS20935 0.22 -0.1
4,307,443 - ABIE41_RS20935 0.29 +1.1
4,307,508 + ABIE41_RS20935 0.36 -0.6
4,307,509 - ABIE41_RS20935 0.36 -0.4
4,307,554 - ABIE41_RS20935 0.40 -0.2
4,307,554 - ABIE41_RS20935 0.40 -0.3
4,307,554 - ABIE41_RS20935 0.40 +0.7
4,307,640 + ABIE41_RS20935 0.48 -2.8
4,307,641 - ABIE41_RS20935 0.49 +0.3
4,307,641 - ABIE41_RS20935 0.49 +1.2
4,307,641 - ABIE41_RS20935 0.49 -3.8
4,307,700 + ABIE41_RS20935 0.54 +0.8
4,307,701 - ABIE41_RS20935 0.54 +0.2
4,307,766 + ABIE41_RS20935 0.61 -1.2
4,307,767 - ABIE41_RS20935 0.61 +0.6
4,307,767 - ABIE41_RS20935 0.61 +0.4
4,307,767 - ABIE41_RS20935 0.61 -0.4
4,307,769 - ABIE41_RS20935 0.61 -1.0
4,307,769 - ABIE41_RS20935 0.61 -0.4
4,307,843 - ABIE41_RS20935 0.68 -2.2
4,307,952 + ABIE41_RS20935 0.79 -0.2
4,307,953 - ABIE41_RS20935 0.79 -1.5
4,307,953 - ABIE41_RS20935 0.79 +1.2
4,307,961 + ABIE41_RS20935 0.79 -1.8
4,307,961 + ABIE41_RS20935 0.79 +0.0
4,307,962 - ABIE41_RS20935 0.80 +0.6
4,308,382 + ABIE41_RS20940 0.15 -2.8
4,308,382 + ABIE41_RS20940 0.15 -0.1
4,308,383 - ABIE41_RS20940 0.15 +1.2
4,308,383 - ABIE41_RS20940 0.15 +0.7
4,308,383 - ABIE41_RS20940 0.15 +1.8
4,308,383 - ABIE41_RS20940 0.15 +0.9
4,308,383 - ABIE41_RS20940 0.15 -1.5
4,308,629 + ABIE41_RS20940 0.33 -1.0
4,308,629 + ABIE41_RS20940 0.33 +0.4
4,308,630 - ABIE41_RS20940 0.33 -0.4
4,309,100 + ABIE41_RS20940 0.67 -0.9
4,309,100 + ABIE41_RS20940 0.67 +0.2
4,309,101 - ABIE41_RS20940 0.67 -2.6
4,309,256 - ABIE41_RS20940 0.78 +1.4
4,309,256 - ABIE41_RS20940 0.78 +0.1
4,309,384 + ABIE41_RS20940 0.88 -3.2
4,309,385 - ABIE41_RS20940 0.88 +0.0
4,309,385 - ABIE41_RS20940 0.88 +0.3
4,309,562 - +2.3
4,309,562 - -1.8

Or see this region's nucleotide sequence