Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17845 and ABIE41_RS17850 are separated by 401 nucleotides ABIE41_RS17850 and ABIE41_RS17855 overlap by 4 nucleotides ABIE41_RS17855 and ABIE41_RS17860 are separated by 4 nucleotides ABIE41_RS17860 and ABIE41_RS17865 are separated by 28 nucleotides
ABIE41_RS17845: ABIE41_RS17845 - peptidylprolyl isomerase, at 3,675,883 to 3,676,437
_RS17845
ABIE41_RS17850: ABIE41_RS17850 - DUF1467 family protein, at 3,676,839 to 3,677,069
_RS17850
ABIE41_RS17855: ABIE41_RS17855 - RidA family protein, at 3,677,066 to 3,677,476
_RS17855
ABIE41_RS17860: ABIE41_RS17860 - methylmalonyl-CoA epimerase, at 3,677,481 to 3,677,885
_RS17860
ABIE41_RS17865: ABIE41_RS17865 - ribonuclease J, at 3,677,914 to 3,679,584
_RS17865
Position (kb) 3677
3678 Strain fitness (log2 ratio) -2
-1
0
1 at 3676.115 kb on + strand, within ABIE41_RS17845 at 3676.115 kb on + strand, within ABIE41_RS17845 at 3676.238 kb on + strand, within ABIE41_RS17845 at 3676.707 kb on - strand at 3676.865 kb on - strand, within ABIE41_RS17850 at 3677.191 kb on - strand, within ABIE41_RS17855 at 3677.191 kb on - strand, within ABIE41_RS17855 at 3677.211 kb on + strand, within ABIE41_RS17855 at 3677.211 kb on + strand, within ABIE41_RS17855 at 3677.212 kb on - strand, within ABIE41_RS17855 at 3677.212 kb on - strand, within ABIE41_RS17855 at 3677.915 kb on + strand at 3677.916 kb on - strand at 3678.074 kb on + strand at 3678.074 kb on + strand at 3678.261 kb on - strand, within ABIE41_RS17865 at 3678.261 kb on - strand, within ABIE41_RS17865 at 3678.443 kb on + strand, within ABIE41_RS17865 at 3678.443 kb on + strand, within ABIE41_RS17865 at 3678.444 kb on - strand, within ABIE41_RS17865
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 3,676,115 + ABIE41_RS17845 0.42 +0.2 3,676,115 + ABIE41_RS17845 0.42 +0.2 3,676,238 + ABIE41_RS17845 0.64 +0.2 3,676,707 - +0.4 3,676,865 - ABIE41_RS17850 0.11 +0.8 3,677,191 - ABIE41_RS17855 0.30 -0.5 3,677,191 - ABIE41_RS17855 0.30 -2.1 3,677,211 + ABIE41_RS17855 0.35 -0.2 3,677,211 + ABIE41_RS17855 0.35 -1.0 3,677,212 - ABIE41_RS17855 0.36 +1.0 3,677,212 - ABIE41_RS17855 0.36 -1.4 3,677,915 + -0.6 3,677,916 - -1.5 3,678,074 + +0.1 3,678,074 + +0.1 3,678,261 - ABIE41_RS17865 0.21 +0.3 3,678,261 - ABIE41_RS17865 0.21 +0.4 3,678,443 + ABIE41_RS17865 0.32 -0.0 3,678,443 + ABIE41_RS17865 0.32 +0.2 3,678,444 - ABIE41_RS17865 0.32 +0.0
Or see this region's nucleotide sequence