Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12975

Experiment: D-Gluconic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS12970 and ABIE41_RS12975 are separated by 5 nucleotidesABIE41_RS12975 and ABIE41_RS12980 overlap by 4 nucleotidesABIE41_RS12980 and ABIE41_RS12985 are separated by 44 nucleotides ABIE41_RS12970: ABIE41_RS12970 - endonuclease, at 2,652,519 to 2,653,634 _RS12970 ABIE41_RS12975: ABIE41_RS12975 - PhzF family phenazine biosynthesis protein, at 2,653,640 to 2,654,542 _RS12975 ABIE41_RS12980: ABIE41_RS12980 - NUDIX hydrolase, at 2,654,539 to 2,655,291 _RS12980 ABIE41_RS12985: ABIE41_RS12985 - M3 family metallopeptidase, at 2,655,336 to 2,657,438 _RS12985 Position (kb) 2653 2654 2655Strain fitness (log2 ratio) -2 -1 0 1 2at 2652.789 kb on + strand, within ABIE41_RS12970at 2652.789 kb on + strand, within ABIE41_RS12970at 2652.789 kb on + strand, within ABIE41_RS12970at 2652.789 kb on + strand, within ABIE41_RS12970at 2652.790 kb on - strand, within ABIE41_RS12970at 2653.224 kb on + strand, within ABIE41_RS12970at 2653.359 kb on + strand, within ABIE41_RS12970at 2653.397 kb on + strand, within ABIE41_RS12970at 2653.397 kb on + strand, within ABIE41_RS12970at 2653.397 kb on + strand, within ABIE41_RS12970at 2653.397 kb on + strand, within ABIE41_RS12970at 2653.397 kb on + strand, within ABIE41_RS12970at 2653.398 kb on - strand, within ABIE41_RS12970at 2653.398 kb on - strand, within ABIE41_RS12970at 2653.398 kb on - strand, within ABIE41_RS12970at 2653.413 kb on - strand, within ABIE41_RS12970at 2653.732 kb on + strand, within ABIE41_RS12975at 2654.286 kb on - strand, within ABIE41_RS12975at 2654.286 kb on - strand, within ABIE41_RS12975at 2654.635 kb on + strand, within ABIE41_RS12980at 2654.712 kb on + strand, within ABIE41_RS12980at 2654.713 kb on - strand, within ABIE41_RS12980at 2654.794 kb on + strand, within ABIE41_RS12980at 2654.938 kb on + strand, within ABIE41_RS12980at 2654.939 kb on - strand, within ABIE41_RS12980at 2654.939 kb on - strand, within ABIE41_RS12980at 2655.274 kb on - strandat 2655.274 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
remove
2,652,789 + ABIE41_RS12970 0.24 +2.1
2,652,789 + ABIE41_RS12970 0.24 -0.4
2,652,789 + ABIE41_RS12970 0.24 -0.2
2,652,789 + ABIE41_RS12970 0.24 +0.7
2,652,790 - ABIE41_RS12970 0.24 -2.3
2,653,224 + ABIE41_RS12970 0.63 -0.6
2,653,359 + ABIE41_RS12970 0.75 -0.7
2,653,397 + ABIE41_RS12970 0.79 -0.9
2,653,397 + ABIE41_RS12970 0.79 +0.2
2,653,397 + ABIE41_RS12970 0.79 +0.4
2,653,397 + ABIE41_RS12970 0.79 +0.4
2,653,397 + ABIE41_RS12970 0.79 +0.6
2,653,398 - ABIE41_RS12970 0.79 +0.3
2,653,398 - ABIE41_RS12970 0.79 +2.0
2,653,398 - ABIE41_RS12970 0.79 +0.4
2,653,413 - ABIE41_RS12970 0.80 -1.0
2,653,732 + ABIE41_RS12975 0.10 -0.5
2,654,286 - ABIE41_RS12975 0.72 +0.1
2,654,286 - ABIE41_RS12975 0.72 +0.9
2,654,635 + ABIE41_RS12980 0.13 +2.3
2,654,712 + ABIE41_RS12980 0.23 -0.2
2,654,713 - ABIE41_RS12980 0.23 +0.6
2,654,794 + ABIE41_RS12980 0.34 -1.8
2,654,938 + ABIE41_RS12980 0.53 -0.8
2,654,939 - ABIE41_RS12980 0.53 +0.3
2,654,939 - ABIE41_RS12980 0.53 -2.2
2,655,274 - -0.7
2,655,274 - -0.8

Or see this region's nucleotide sequence