Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS12970 and ABIE41_RS12975 are separated by 5 nucleotides ABIE41_RS12975 and ABIE41_RS12980 overlap by 4 nucleotides ABIE41_RS12980 and ABIE41_RS12985 are separated by 44 nucleotides
ABIE41_RS12970: ABIE41_RS12970 - endonuclease, at 2,652,519 to 2,653,634
_RS12970
ABIE41_RS12975: ABIE41_RS12975 - PhzF family phenazine biosynthesis protein, at 2,653,640 to 2,654,542
_RS12975
ABIE41_RS12980: ABIE41_RS12980 - NUDIX hydrolase, at 2,654,539 to 2,655,291
_RS12980
ABIE41_RS12985: ABIE41_RS12985 - M3 family metallopeptidase, at 2,655,336 to 2,657,438
_RS12985
Position (kb)
2653
2654
2655 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2652.789 kb on + strand, within ABIE41_RS12970 at 2652.789 kb on + strand, within ABIE41_RS12970 at 2652.789 kb on + strand, within ABIE41_RS12970 at 2652.789 kb on + strand, within ABIE41_RS12970 at 2652.790 kb on - strand, within ABIE41_RS12970 at 2653.224 kb on + strand, within ABIE41_RS12970 at 2653.359 kb on + strand, within ABIE41_RS12970 at 2653.397 kb on + strand, within ABIE41_RS12970 at 2653.397 kb on + strand, within ABIE41_RS12970 at 2653.397 kb on + strand, within ABIE41_RS12970 at 2653.397 kb on + strand, within ABIE41_RS12970 at 2653.397 kb on + strand, within ABIE41_RS12970 at 2653.398 kb on - strand, within ABIE41_RS12970 at 2653.398 kb on - strand, within ABIE41_RS12970 at 2653.398 kb on - strand, within ABIE41_RS12970 at 2653.413 kb on - strand, within ABIE41_RS12970 at 2653.732 kb on + strand, within ABIE41_RS12975 at 2654.286 kb on - strand, within ABIE41_RS12975 at 2654.286 kb on - strand, within ABIE41_RS12975 at 2654.635 kb on + strand, within ABIE41_RS12980 at 2654.712 kb on + strand, within ABIE41_RS12980 at 2654.713 kb on - strand, within ABIE41_RS12980 at 2654.794 kb on + strand, within ABIE41_RS12980 at 2654.938 kb on + strand, within ABIE41_RS12980 at 2654.939 kb on - strand, within ABIE41_RS12980 at 2654.939 kb on - strand, within ABIE41_RS12980 at 2655.274 kb on - strand at 2655.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 2,652,789 + ABIE41_RS12970 0.24 +2.1 2,652,789 + ABIE41_RS12970 0.24 -0.4 2,652,789 + ABIE41_RS12970 0.24 -0.2 2,652,789 + ABIE41_RS12970 0.24 +0.7 2,652,790 - ABIE41_RS12970 0.24 -2.3 2,653,224 + ABIE41_RS12970 0.63 -0.6 2,653,359 + ABIE41_RS12970 0.75 -0.7 2,653,397 + ABIE41_RS12970 0.79 -0.9 2,653,397 + ABIE41_RS12970 0.79 +0.2 2,653,397 + ABIE41_RS12970 0.79 +0.4 2,653,397 + ABIE41_RS12970 0.79 +0.4 2,653,397 + ABIE41_RS12970 0.79 +0.6 2,653,398 - ABIE41_RS12970 0.79 +0.3 2,653,398 - ABIE41_RS12970 0.79 +2.0 2,653,398 - ABIE41_RS12970 0.79 +0.4 2,653,413 - ABIE41_RS12970 0.80 -1.0 2,653,732 + ABIE41_RS12975 0.10 -0.5 2,654,286 - ABIE41_RS12975 0.72 +0.1 2,654,286 - ABIE41_RS12975 0.72 +0.9 2,654,635 + ABIE41_RS12980 0.13 +2.3 2,654,712 + ABIE41_RS12980 0.23 -0.2 2,654,713 - ABIE41_RS12980 0.23 +0.6 2,654,794 + ABIE41_RS12980 0.34 -1.8 2,654,938 + ABIE41_RS12980 0.53 -0.8 2,654,939 - ABIE41_RS12980 0.53 +0.3 2,654,939 - ABIE41_RS12980 0.53 -2.2 2,655,274 - -0.7 2,655,274 - -0.8
Or see this region's nucleotide sequence