Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08800 and ABIE41_RS08805 are separated by 703 nucleotides ABIE41_RS08805 and ABIE41_RS08810 are separated by 208 nucleotides ABIE41_RS08810 and ABIE41_RS08815 are separated by 87 nucleotides
ABIE41_RS08800: ABIE41_RS08800 - DUF559 domain-containing protein, at 1,823,067 to 1,823,405
_RS08800
ABIE41_RS08805: ABIE41_RS08805 - hypothetical protein, at 1,824,109 to 1,824,342
_RS08805
ABIE41_RS08810: ABIE41_RS08810 - hypothetical protein, at 1,824,551 to 1,824,814
_RS08810
ABIE41_RS08815: ABIE41_RS08815 - RbsD/FucU domain-containing protein, at 1,824,902 to 1,825,357
_RS08815
Position (kb)
1824
1825 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1823.191 kb on + strand, within ABIE41_RS08800 at 1823.192 kb on - strand, within ABIE41_RS08800 at 1823.223 kb on + strand, within ABIE41_RS08800 at 1823.223 kb on + strand, within ABIE41_RS08800 at 1823.223 kb on + strand, within ABIE41_RS08800 at 1823.224 kb on - strand, within ABIE41_RS08800 at 1823.224 kb on - strand, within ABIE41_RS08800 at 1823.270 kb on - strand, within ABIE41_RS08800 at 1823.270 kb on - strand, within ABIE41_RS08800 at 1823.536 kb on + strand at 1823.665 kb on - strand at 1824.498 kb on - strand at 1824.514 kb on + strand at 1824.515 kb on - strand at 1824.951 kb on + strand, within ABIE41_RS08815 at 1824.952 kb on - strand, within ABIE41_RS08815 at 1824.952 kb on - strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.005 kb on + strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815 at 1825.006 kb on - strand, within ABIE41_RS08815
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 1,823,191 + ABIE41_RS08800 0.37 -1.4 1,823,192 - ABIE41_RS08800 0.37 -1.5 1,823,223 + ABIE41_RS08800 0.46 +0.1 1,823,223 + ABIE41_RS08800 0.46 +1.1 1,823,223 + ABIE41_RS08800 0.46 +0.0 1,823,224 - ABIE41_RS08800 0.46 -2.4 1,823,224 - ABIE41_RS08800 0.46 +0.1 1,823,270 - ABIE41_RS08800 0.60 +0.9 1,823,270 - ABIE41_RS08800 0.60 +0.1 1,823,536 + +1.8 1,823,665 - +1.0 1,824,498 - -1.1 1,824,514 + -0.6 1,824,515 - +1.1 1,824,951 + ABIE41_RS08815 0.11 +1.1 1,824,952 - ABIE41_RS08815 0.11 +2.0 1,824,952 - ABIE41_RS08815 0.11 -0.2 1,825,005 + ABIE41_RS08815 0.23 +0.3 1,825,005 + ABIE41_RS08815 0.23 -0.2 1,825,005 + ABIE41_RS08815 0.23 -2.6 1,825,005 + ABIE41_RS08815 0.23 -0.8 1,825,006 - ABIE41_RS08815 0.23 -0.2 1,825,006 - ABIE41_RS08815 0.23 -0.2 1,825,006 - ABIE41_RS08815 0.23 -1.0
Or see this region's nucleotide sequence