Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07770 and ABIE41_RS07775 are separated by 31 nucleotides ABIE41_RS07775 and ABIE41_RS07780 are separated by 197 nucleotides
ABIE41_RS07770: ABIE41_RS07770 - tripartite tricarboxylate transporter permease, at 1,594,110 to 1,595,615
_RS07770
ABIE41_RS07775: ABIE41_RS07775 - enoyl-CoA hydratase-related protein, at 1,595,647 to 1,596,390
_RS07775
ABIE41_RS07780: ABIE41_RS07780 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 1,596,588 to 1,598,669
_RS07780
Position (kb)
1595
1596
1597 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1594.851 kb on + strand, within ABIE41_RS07770 at 1594.852 kb on - strand, within ABIE41_RS07770 at 1594.941 kb on + strand, within ABIE41_RS07770 at 1594.941 kb on + strand, within ABIE41_RS07770 at 1594.942 kb on - strand, within ABIE41_RS07770 at 1594.942 kb on - strand, within ABIE41_RS07770 at 1594.942 kb on - strand, within ABIE41_RS07770 at 1595.115 kb on + strand, within ABIE41_RS07770 at 1595.116 kb on - strand, within ABIE41_RS07770 at 1595.116 kb on - strand, within ABIE41_RS07770 at 1595.116 kb on - strand, within ABIE41_RS07770 at 1595.116 kb on - strand, within ABIE41_RS07770 at 1595.116 kb on - strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.172 kb on + strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.173 kb on - strand, within ABIE41_RS07770 at 1595.181 kb on + strand, within ABIE41_RS07770 at 1595.182 kb on - strand, within ABIE41_RS07770 at 1595.349 kb on + strand, within ABIE41_RS07770 at 1595.349 kb on + strand, within ABIE41_RS07770 at 1595.349 kb on + strand, within ABIE41_RS07770 at 1595.349 kb on + strand, within ABIE41_RS07770 at 1595.350 kb on - strand, within ABIE41_RS07770 at 1595.350 kb on - strand, within ABIE41_RS07770 at 1595.350 kb on - strand, within ABIE41_RS07770 at 1595.350 kb on - strand, within ABIE41_RS07770 at 1595.350 kb on - strand, within ABIE41_RS07770 at 1595.350 kb on - strand, within ABIE41_RS07770 at 1595.350 kb on - strand, within ABIE41_RS07770 at 1595.392 kb on - strand, within ABIE41_RS07770 at 1595.967 kb on - strand, within ABIE41_RS07775 at 1595.967 kb on - strand, within ABIE41_RS07775 at 1596.293 kb on + strand, within ABIE41_RS07775 at 1596.293 kb on + strand, within ABIE41_RS07775 at 1596.293 kb on + strand, within ABIE41_RS07775 at 1596.294 kb on - strand, within ABIE41_RS07775 at 1596.294 kb on - strand, within ABIE41_RS07775 at 1596.587 kb on + strand at 1596.587 kb on + strand at 1596.588 kb on - strand at 1596.588 kb on - strand at 1596.736 kb on + strand at 1596.736 kb on + strand at 1596.737 kb on - strand at 1596.737 kb on - strand at 1596.810 kb on + strand, within ABIE41_RS07780 at 1596.810 kb on + strand, within ABIE41_RS07780 at 1596.811 kb on - strand, within ABIE41_RS07780
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 1,594,851 + ABIE41_RS07770 0.49 -0.3 1,594,852 - ABIE41_RS07770 0.49 -0.7 1,594,941 + ABIE41_RS07770 0.55 +1.7 1,594,941 + ABIE41_RS07770 0.55 -2.0 1,594,942 - ABIE41_RS07770 0.55 -0.3 1,594,942 - ABIE41_RS07770 0.55 -0.6 1,594,942 - ABIE41_RS07770 0.55 +0.6 1,595,115 + ABIE41_RS07770 0.67 -0.2 1,595,116 - ABIE41_RS07770 0.67 +0.1 1,595,116 - ABIE41_RS07770 0.67 +2.0 1,595,116 - ABIE41_RS07770 0.67 +0.4 1,595,116 - ABIE41_RS07770 0.67 +0.5 1,595,116 - ABIE41_RS07770 0.67 -0.1 1,595,172 + ABIE41_RS07770 0.71 -1.4 1,595,172 + ABIE41_RS07770 0.71 +1.2 1,595,172 + ABIE41_RS07770 0.71 -0.6 1,595,172 + ABIE41_RS07770 0.71 -0.0 1,595,172 + ABIE41_RS07770 0.71 +0.2 1,595,172 + ABIE41_RS07770 0.71 +1.1 1,595,172 + ABIE41_RS07770 0.71 -1.3 1,595,172 + ABIE41_RS07770 0.71 +0.2 1,595,172 + ABIE41_RS07770 0.71 +0.5 1,595,172 + ABIE41_RS07770 0.71 +1.0 1,595,172 + ABIE41_RS07770 0.71 -1.0 1,595,172 + ABIE41_RS07770 0.71 +2.8 1,595,172 + ABIE41_RS07770 0.71 +0.6 1,595,172 + ABIE41_RS07770 0.71 +1.4 1,595,173 - ABIE41_RS07770 0.71 -0.7 1,595,173 - ABIE41_RS07770 0.71 -3.1 1,595,173 - ABIE41_RS07770 0.71 -0.6 1,595,173 - ABIE41_RS07770 0.71 -0.4 1,595,173 - ABIE41_RS07770 0.71 +0.0 1,595,173 - ABIE41_RS07770 0.71 +0.2 1,595,173 - ABIE41_RS07770 0.71 -1.1 1,595,173 - ABIE41_RS07770 0.71 +0.7 1,595,173 - ABIE41_RS07770 0.71 +0.3 1,595,173 - ABIE41_RS07770 0.71 -2.6 1,595,181 + ABIE41_RS07770 0.71 -0.3 1,595,182 - ABIE41_RS07770 0.71 -0.3 1,595,349 + ABIE41_RS07770 0.82 -0.4 1,595,349 + ABIE41_RS07770 0.82 +0.0 1,595,349 + ABIE41_RS07770 0.82 -1.2 1,595,349 + ABIE41_RS07770 0.82 -1.9 1,595,350 - ABIE41_RS07770 0.82 -0.0 1,595,350 - ABIE41_RS07770 0.82 -0.9 1,595,350 - ABIE41_RS07770 0.82 +1.3 1,595,350 - ABIE41_RS07770 0.82 -0.0 1,595,350 - ABIE41_RS07770 0.82 -0.0 1,595,350 - ABIE41_RS07770 0.82 +1.2 1,595,350 - ABIE41_RS07770 0.82 +0.7 1,595,392 - ABIE41_RS07770 0.85 -1.0 1,595,967 - ABIE41_RS07775 0.43 +0.4 1,595,967 - ABIE41_RS07775 0.43 -0.6 1,596,293 + ABIE41_RS07775 0.87 +0.5 1,596,293 + ABIE41_RS07775 0.87 -1.1 1,596,293 + ABIE41_RS07775 0.87 +0.3 1,596,294 - ABIE41_RS07775 0.87 +0.2 1,596,294 - ABIE41_RS07775 0.87 -0.4 1,596,587 + -0.6 1,596,587 + +0.5 1,596,588 - -0.8 1,596,588 - -0.1 1,596,736 + -1.3 1,596,736 + -0.6 1,596,737 - +0.1 1,596,737 - -0.6 1,596,810 + ABIE41_RS07780 0.11 +0.2 1,596,810 + ABIE41_RS07780 0.11 +2.8 1,596,811 - ABIE41_RS07780 0.11 +2.0
Or see this region's nucleotide sequence