Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07670 and ABIE41_RS07675 overlap by 4 nucleotides ABIE41_RS07675 and ABIE41_RS07680 overlap by 4 nucleotides ABIE41_RS07680 and ABIE41_RS07685 overlap by 1 nucleotides ABIE41_RS07685 and ABIE41_RS07690 overlap by 1 nucleotides
ABIE41_RS07670: ABIE41_RS07670 - phosphonate C-P lyase system protein PhnK, at 1,568,460 to 1,569,266
_RS07670
ABIE41_RS07675: ABIE41_RS07675 - alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ, at 1,569,263 to 1,570,195
_RS07675
ABIE41_RS07680: ABIE41_RS07680 - carbon-phosphorus lyase complex subunit PhnI, at 1,570,192 to 1,571,394
_RS07680
ABIE41_RS07685: ABIE41_RS07685 - phosphonate C-P lyase system protein PhnH, at 1,571,394 to 1,571,996
_RS07685
ABIE41_RS07690: ABIE41_RS07690 - phosphonate C-P lyase system protein PhnG, at 1,571,996 to 1,572,433
_RS07690
Position (kb) 1570
1571
1572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1569.287 kb on + strand at 1569.287 kb on + strand at 1569.287 kb on + strand at 1569.420 kb on + strand, within ABIE41_RS07675 at 1569.420 kb on + strand, within ABIE41_RS07675 at 1569.420 kb on + strand, within ABIE41_RS07675 at 1569.421 kb on - strand, within ABIE41_RS07675 at 1569.511 kb on + strand, within ABIE41_RS07675 at 1569.512 kb on - strand, within ABIE41_RS07675 at 1569.512 kb on - strand, within ABIE41_RS07675 at 1569.512 kb on - strand, within ABIE41_RS07675 at 1569.528 kb on + strand, within ABIE41_RS07675 at 1569.528 kb on + strand, within ABIE41_RS07675 at 1569.529 kb on - strand, within ABIE41_RS07675 at 1569.529 kb on - strand, within ABIE41_RS07675 at 1569.628 kb on - strand, within ABIE41_RS07675 at 1569.628 kb on - strand, within ABIE41_RS07675 at 1569.651 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.657 kb on + strand, within ABIE41_RS07675 at 1569.658 kb on - strand, within ABIE41_RS07675 at 1569.658 kb on - strand, within ABIE41_RS07675 at 1569.658 kb on - strand, within ABIE41_RS07675 at 1569.658 kb on - strand, within ABIE41_RS07675 at 1569.658 kb on - strand, within ABIE41_RS07675 at 1569.658 kb on - strand, within ABIE41_RS07675 at 1569.658 kb on - strand, within ABIE41_RS07675 at 1569.658 kb on - strand, within ABIE41_RS07675 at 1569.658 kb on - strand, within ABIE41_RS07675 at 1569.696 kb on + strand, within ABIE41_RS07675 at 1569.696 kb on + strand, within ABIE41_RS07675 at 1569.696 kb on + strand, within ABIE41_RS07675 at 1569.697 kb on - strand, within ABIE41_RS07675 at 1569.720 kb on + strand, within ABIE41_RS07675 at 1569.720 kb on + strand, within ABIE41_RS07675 at 1569.802 kb on - strand, within ABIE41_RS07675 at 1569.802 kb on - strand, within ABIE41_RS07675 at 1570.072 kb on - strand, within ABIE41_RS07675 at 1570.072 kb on - strand, within ABIE41_RS07675 at 1570.094 kb on + strand, within ABIE41_RS07675 at 1570.094 kb on + strand, within ABIE41_RS07675 at 1570.094 kb on + strand, within ABIE41_RS07675 at 1570.137 kb on + strand at 1570.137 kb on + strand at 1570.137 kb on + strand at 1570.137 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.143 kb on + strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.144 kb on - strand at 1570.149 kb on + strand at 1570.149 kb on + strand at 1570.149 kb on + strand at 1570.149 kb on + strand at 1570.295 kb on + strand at 1570.295 kb on + strand at 1570.295 kb on + strand at 1570.295 kb on + strand at 1570.296 kb on - strand at 1570.296 kb on - strand at 1570.296 kb on - strand at 1570.296 kb on - strand at 1570.352 kb on + strand, within ABIE41_RS07680 at 1570.353 kb on - strand, within ABIE41_RS07680 at 1570.353 kb on - strand, within ABIE41_RS07680 at 1570.353 kb on - strand, within ABIE41_RS07680 at 1570.353 kb on - strand, within ABIE41_RS07680 at 1570.353 kb on - strand, within ABIE41_RS07680 at 1571.024 kb on + strand, within ABIE41_RS07680 at 1571.025 kb on - strand, within ABIE41_RS07680 at 1571.030 kb on + strand, within ABIE41_RS07680 at 1571.030 kb on + strand, within ABIE41_RS07680 at 1571.030 kb on + strand, within ABIE41_RS07680 at 1571.069 kb on + strand, within ABIE41_RS07680 at 1571.070 kb on - strand, within ABIE41_RS07680 at 1571.232 kb on - strand, within ABIE41_RS07680 at 1571.243 kb on - strand, within ABIE41_RS07680 at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.390 kb on + strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.391 kb on - strand at 1571.479 kb on + strand, within ABIE41_RS07685 at 1571.812 kb on + strand, within ABIE41_RS07685 at 1571.813 kb on - strand, within ABIE41_RS07685 at 1572.192 kb on + strand, within ABIE41_RS07690 at 1572.192 kb on + strand, within ABIE41_RS07690 at 1572.192 kb on + strand, within ABIE41_RS07690 at 1572.192 kb on + strand, within ABIE41_RS07690 at 1572.192 kb on + strand, within ABIE41_RS07690 at 1572.193 kb on - strand, within ABIE41_RS07690 at 1572.193 kb on - strand, within ABIE41_RS07690 at 1572.193 kb on - strand, within ABIE41_RS07690 at 1572.193 kb on - strand, within ABIE41_RS07690
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 1,569,287 + -2.4 1,569,287 + -0.0 1,569,287 + -0.1 1,569,420 + ABIE41_RS07675 0.17 -1.6 1,569,420 + ABIE41_RS07675 0.17 +0.4 1,569,420 + ABIE41_RS07675 0.17 -1.0 1,569,421 - ABIE41_RS07675 0.17 +0.5 1,569,511 + ABIE41_RS07675 0.27 -0.2 1,569,512 - ABIE41_RS07675 0.27 -1.9 1,569,512 - ABIE41_RS07675 0.27 -3.1 1,569,512 - ABIE41_RS07675 0.27 -0.7 1,569,528 + ABIE41_RS07675 0.28 +0.1 1,569,528 + ABIE41_RS07675 0.28 -0.4 1,569,529 - ABIE41_RS07675 0.29 -0.0 1,569,529 - ABIE41_RS07675 0.29 +1.0 1,569,628 - ABIE41_RS07675 0.39 -1.9 1,569,628 - ABIE41_RS07675 0.39 -1.2 1,569,651 + ABIE41_RS07675 0.42 +1.3 1,569,657 + ABIE41_RS07675 0.42 +0.8 1,569,657 + ABIE41_RS07675 0.42 -0.5 1,569,657 + ABIE41_RS07675 0.42 +0.6 1,569,657 + ABIE41_RS07675 0.42 -2.1 1,569,657 + ABIE41_RS07675 0.42 -0.5 1,569,657 + ABIE41_RS07675 0.42 -0.8 1,569,657 + ABIE41_RS07675 0.42 +2.1 1,569,657 + ABIE41_RS07675 0.42 +2.2 1,569,657 + ABIE41_RS07675 0.42 -0.6 1,569,657 + ABIE41_RS07675 0.42 +0.0 1,569,657 + ABIE41_RS07675 0.42 +0.1 1,569,657 + ABIE41_RS07675 0.42 +1.7 1,569,657 + ABIE41_RS07675 0.42 -0.2 1,569,657 + ABIE41_RS07675 0.42 +0.3 1,569,657 + ABIE41_RS07675 0.42 +0.4 1,569,658 - ABIE41_RS07675 0.42 +0.3 1,569,658 - ABIE41_RS07675 0.42 -0.3 1,569,658 - ABIE41_RS07675 0.42 +1.0 1,569,658 - ABIE41_RS07675 0.42 +0.3 1,569,658 - ABIE41_RS07675 0.42 -0.2 1,569,658 - ABIE41_RS07675 0.42 -0.5 1,569,658 - ABIE41_RS07675 0.42 +0.5 1,569,658 - ABIE41_RS07675 0.42 +0.4 1,569,658 - ABIE41_RS07675 0.42 -0.2 1,569,696 + ABIE41_RS07675 0.46 +0.1 1,569,696 + ABIE41_RS07675 0.46 -1.0 1,569,696 + ABIE41_RS07675 0.46 +0.5 1,569,697 - ABIE41_RS07675 0.47 -0.5 1,569,720 + ABIE41_RS07675 0.49 -1.1 1,569,720 + ABIE41_RS07675 0.49 +0.1 1,569,802 - ABIE41_RS07675 0.58 +0.7 1,569,802 - ABIE41_RS07675 0.58 +1.1 1,570,072 - ABIE41_RS07675 0.87 -0.3 1,570,072 - ABIE41_RS07675 0.87 +0.0 1,570,094 + ABIE41_RS07675 0.89 +0.5 1,570,094 + ABIE41_RS07675 0.89 +0.4 1,570,094 + ABIE41_RS07675 0.89 +0.5 1,570,137 + -0.2 1,570,137 + -2.4 1,570,137 + -3.2 1,570,137 + -0.0 1,570,143 + +1.7 1,570,143 + +0.4 1,570,143 + -0.3 1,570,143 + -0.6 1,570,143 + -0.4 1,570,143 + -1.0 1,570,143 + +2.4 1,570,143 + +0.7 1,570,143 + +0.8 1,570,143 + +0.0 1,570,143 + -0.1 1,570,143 + -1.0 1,570,144 - +1.2 1,570,144 - +1.3 1,570,144 - -0.3 1,570,144 - +2.2 1,570,144 - -1.6 1,570,144 - -1.4 1,570,144 - -0.8 1,570,144 - +0.1 1,570,144 - +0.9 1,570,144 - +0.6 1,570,144 - +0.7 1,570,144 - -0.4 1,570,149 + -0.5 1,570,149 + +0.0 1,570,149 + -1.0 1,570,149 + -3.1 1,570,295 + +0.2 1,570,295 + +0.4 1,570,295 + +1.4 1,570,295 + -1.3 1,570,296 - -1.1 1,570,296 - -0.8 1,570,296 - +0.1 1,570,296 - +0.7 1,570,352 + ABIE41_RS07680 0.13 -0.9 1,570,353 - ABIE41_RS07680 0.13 -1.6 1,570,353 - ABIE41_RS07680 0.13 -0.8 1,570,353 - ABIE41_RS07680 0.13 +2.0 1,570,353 - ABIE41_RS07680 0.13 -0.5 1,570,353 - ABIE41_RS07680 0.13 +1.0 1,571,024 + ABIE41_RS07680 0.69 +0.6 1,571,025 - ABIE41_RS07680 0.69 +0.2 1,571,030 + ABIE41_RS07680 0.70 -0.4 1,571,030 + ABIE41_RS07680 0.70 +0.2 1,571,030 + ABIE41_RS07680 0.70 +1.1 1,571,069 + ABIE41_RS07680 0.73 +0.0 1,571,070 - ABIE41_RS07680 0.73 -0.4 1,571,232 - ABIE41_RS07680 0.86 +0.0 1,571,243 - ABIE41_RS07680 0.87 -0.4 1,571,390 + -0.1 1,571,390 + -2.5 1,571,390 + -1.5 1,571,390 + +0.1 1,571,390 + -1.9 1,571,390 + -1.4 1,571,390 + -0.3 1,571,390 + -0.1 1,571,390 + +0.1 1,571,390 + +0.0 1,571,390 + -0.6 1,571,390 + +0.3 1,571,390 + -1.5 1,571,390 + +0.3 1,571,390 + -0.4 1,571,390 + +0.8 1,571,390 + -0.9 1,571,390 + +0.2 1,571,390 + -0.3 1,571,390 + +0.6 1,571,391 - -0.4 1,571,391 - -1.0 1,571,391 - +0.9 1,571,391 - -0.3 1,571,391 - -2.1 1,571,391 - +2.0 1,571,391 - -0.3 1,571,391 - -0.8 1,571,391 - -1.1 1,571,391 - +0.5 1,571,391 - -1.3 1,571,391 - -2.5 1,571,479 + ABIE41_RS07685 0.14 +0.5 1,571,812 + ABIE41_RS07685 0.69 +1.3 1,571,813 - ABIE41_RS07685 0.69 +0.3 1,572,192 + ABIE41_RS07690 0.45 -0.4 1,572,192 + ABIE41_RS07690 0.45 -1.6 1,572,192 + ABIE41_RS07690 0.45 -0.8 1,572,192 + ABIE41_RS07690 0.45 +0.1 1,572,192 + ABIE41_RS07690 0.45 +0.0 1,572,193 - ABIE41_RS07690 0.45 +0.4 1,572,193 - ABIE41_RS07690 0.45 +0.3 1,572,193 - ABIE41_RS07690 0.45 -0.4 1,572,193 - ABIE41_RS07690 0.45 +0.3
Or see this region's nucleotide sequence