Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29210

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29205 and ABID97_RS29210 are separated by 29 nucleotidesABID97_RS29210 and ABID97_RS29215 are separated by 38 nucleotides ABID97_RS29205: ABID97_RS29205 - alkaline phosphatase D family protein, at 760,859 to 766,438 _RS29205 ABID97_RS29210: ABID97_RS29210 - TerC family protein, at 766,468 to 767,217 _RS29210 ABID97_RS29215: ABID97_RS29215 - LysR family transcriptional regulator, at 767,256 to 768,191 _RS29215 Position (kb) 766 767 768Strain fitness (log2 ratio) -1 0 1at 765.488 kb on + strand, within ABID97_RS29205at 765.489 kb on - strand, within ABID97_RS29205at 765.546 kb on - strand, within ABID97_RS29205at 766.151 kb on + strandat 766.152 kb on - strandat 766.152 kb on - strandat 766.574 kb on + strand, within ABID97_RS29210at 766.580 kb on + strand, within ABID97_RS29210at 766.580 kb on + strand, within ABID97_RS29210at 766.581 kb on - strand, within ABID97_RS29210at 767.257 kb on + strandat 767.257 kb on + strandat 767.357 kb on - strand, within ABID97_RS29215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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765,488 + ABID97_RS29205 0.83 +0.3
765,489 - ABID97_RS29205 0.83 -0.7
765,546 - ABID97_RS29205 0.84 +0.4
766,151 + +0.2
766,152 - -0.6
766,152 - -1.2
766,574 + ABID97_RS29210 0.14 -0.5
766,580 + ABID97_RS29210 0.15 +0.1
766,580 + ABID97_RS29210 0.15 -0.2
766,581 - ABID97_RS29210 0.15 -1.0
767,257 + -0.3
767,257 + +0.6
767,357 - ABID97_RS29215 0.11 +0.1

Or see this region's nucleotide sequence